Wall clock time and date at job start Tue Mar 31 2020 09:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47075 * 2 1 4 4 C 1.53001 * 109.46733 * 240.00012 * 2 1 3 5 5 C 1.52997 * 109.47077 * 54.71034 * 4 2 1 6 6 H 1.08994 * 109.47408 * 305.70225 * 5 4 2 7 7 C 1.53009 * 109.47069 * 185.70274 * 5 4 2 8 8 N 1.46499 * 109.47223 * 65.70534 * 5 4 2 9 9 C 1.36932 * 120.00018 * 207.22811 * 8 5 4 10 10 H 1.08004 * 120.00422 * 354.48521 * 9 8 5 11 11 C 1.38812 * 120.00178 * 174.76511 * 9 8 5 12 12 N 1.31619 * 120.00217 * 183.82699 * 11 9 8 13 13 Si 1.86798 * 119.99823 * 3.81997 * 11 9 8 14 14 H 1.48506 * 109.47124 * 93.63043 * 13 11 9 15 15 H 1.48497 * 109.47302 * 213.62671 * 13 11 9 16 16 H 1.48497 * 109.47582 * 333.63059 * 13 11 9 17 17 N 1.46503 * 109.47193 * 120.00103 * 2 1 3 18 18 C 1.34772 * 119.99859 * 276.77542 * 17 2 1 19 19 O 1.21280 * 120.00197 * 7.13773 * 18 17 2 20 20 C 1.50702 * 119.99890 * 187.13709 * 18 17 2 21 21 C 1.52995 * 115.54919 * 69.54876 * 20 18 17 22 22 F 1.39903 * 109.47275 * 70.97069 * 21 20 18 23 23 F 1.39897 * 109.46998 * 190.96731 * 21 20 18 24 24 F 1.39895 * 109.47464 * 310.96957 * 21 20 18 25 25 C 1.53004 * 117.50002 * 283.87598 * 20 18 17 26 26 C 1.53000 * 117.49816 * 215.22036 * 20 18 17 27 27 H 1.09003 * 109.46633 * 299.99881 * 1 2 3 28 28 H 1.08998 * 109.47455 * 59.99943 * 1 2 3 29 29 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47382 * 294.70728 * 4 2 1 31 31 H 1.09005 * 109.46697 * 174.70742 * 4 2 1 32 32 H 1.08994 * 109.46965 * 300.00222 * 7 5 4 33 33 H 1.08999 * 109.46865 * 59.99897 * 7 5 4 34 34 H 1.08992 * 109.46917 * 179.97438 * 7 5 4 35 35 H 0.97007 * 120.00074 * 27.23112 * 8 5 4 36 36 H 0.97005 * 120.00140 * 179.97438 * 12 11 9 37 37 H 0.96997 * 119.99871 * 96.77455 * 17 2 1 38 38 H 1.09002 * 117.49490 * 0.02562 * 25 20 18 39 39 H 1.08994 * 117.49471 * 145.01673 * 25 20 18 40 40 H 1.09005 * 117.49896 * 214.98365 * 26 20 18 41 41 H 1.09002 * 117.50005 * 359.97108 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.4242 -0.0809 -2.4949 6 1 0.3385 -0.0712 -2.3996 7 6 1.8203 -0.8888 -3.7325 8 7 1.9147 1.2928 -2.6310 9 6 1.1521 2.2318 -3.2727 10 1 0.2310 1.9410 -3.7559 11 6 1.5657 3.5564 -3.3073 12 7 0.7969 4.4718 -3.8581 13 14 3.2134 4.0398 -2.5718 14 1 4.2519 4.0276 -3.6332 15 1 3.1154 5.4029 -1.9909 16 1 3.5828 3.0732 -1.5067 17 7 2.0184 -0.6906 1.1962 18 6 2.1132 -0.0275 2.3656 19 8 1.6748 1.0993 2.4611 20 6 2.7639 -0.6862 3.5547 21 6 4.2760 -0.8936 3.4486 22 9 4.9240 0.3427 3.5420 23 9 4.7065 -1.7254 4.4878 24 9 4.5801 -1.4878 2.2192 25 6 1.9560 -1.7475 4.3043 26 6 2.1889 -0.3737 4.9377 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7560 -1.7727 -1.2032 31 1 3.1258 -0.6399 -1.2979 32 1 2.9060 -0.8985 -3.8278 33 1 1.4553 -1.9108 -3.6312 34 1 1.3813 -0.4328 -4.6198 35 1 2.7799 1.5373 -2.2665 36 1 1.0859 5.3975 -3.8819 37 1 2.2735 -1.6251 1.1464 38 1 0.9540 -1.9697 3.9370 39 1 2.5019 -2.5934 4.7220 40 1 2.8880 -0.3162 5.7721 41 1 1.3404 0.3086 4.9876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135525094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:23 Heat of formation + Delta-G solvation = -154.965590 kcal Electronic energy + Delta-G solvation = -26853.545540 eV Core-core repulsion = 22547.704924 eV Total energy + Delta-G solvation = -4305.840616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.42531 -47.98336 -47.85812 -40.30802 -37.70924 -36.63384 -34.75359 -32.31109 -30.63222 -29.13423 -27.59389 -26.41755 -24.26400 -23.26505 -23.11845 -21.38157 -20.45742 -19.69117 -18.89818 -18.62594 -18.47037 -17.51187 -16.47817 -16.10295 -15.19676 -15.13268 -14.78146 -14.73521 -14.49612 -14.32897 -14.22313 -14.04665 -14.00029 -13.93920 -13.79472 -12.99423 -12.69391 -12.64435 -12.34992 -12.23187 -12.11259 -11.77638 -11.55944 -11.34149 -11.27724 -11.10398 -10.91754 -10.64418 -10.46328 -10.39956 -10.05364 -9.76855 -9.59164 -9.06930 -8.86505 -7.23552 -5.74167 -3.09387 1.95929 2.49470 2.71861 2.94666 3.38193 3.42062 3.45432 3.50783 3.69333 3.90757 4.17391 4.31216 4.46180 4.63160 4.94368 5.01615 5.06394 5.19695 5.29874 5.42501 5.51208 5.51962 5.60549 5.76149 5.91309 5.97557 6.08412 6.21822 6.30040 6.32400 6.43654 6.55889 6.66653 6.83895 6.97619 7.40416 8.02857 8.05758 8.45141 9.24032 9.97022 10.16652 11.44053 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.004159 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.030492 B = 6730.772802 C = 7128.446210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.096 0.904 4 C -0.132 4.132 5 C 0.177 3.823 6 H 0.066 0.934 7 C -0.165 4.165 8 N -0.748 5.748 9 C -0.242 4.242 10 H 0.090 0.910 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.882 3.118 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.713 5.713 18 C 0.552 3.448 19 O -0.509 6.509 20 C -0.243 4.243 21 C 0.499 3.501 22 F -0.171 7.171 23 F -0.177 7.177 24 F -0.173 7.173 25 C -0.132 4.132 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.399 0.601 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -17.955 17.709 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.114 0.886 4 C -0.171 4.171 5 C 0.067 3.933 6 H 0.084 0.916 7 C -0.225 4.225 8 N -0.392 5.392 9 C -0.372 4.372 10 H 0.108 0.892 11 C -0.188 4.188 12 N -0.580 5.580 13 Si 0.712 3.288 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.203 1.203 17 N -0.363 5.363 18 C 0.334 3.666 19 O -0.383 6.383 20 C -0.248 4.248 21 C 0.445 3.555 22 F -0.152 7.152 23 F -0.158 7.158 24 F -0.154 7.154 25 C -0.169 4.169 26 C -0.152 4.152 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.233 0.767 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.652 -16.973 17.629 24.742 hybrid contribution 1.800 0.000 0.295 1.824 sum 5.453 -16.973 17.924 25.280 Atomic orbital electron populations 1.22192 0.94772 1.01257 1.03648 1.21096 0.94796 0.97848 0.82004 0.88583 1.22178 1.01093 0.99148 0.94708 1.20277 0.97758 0.84902 0.90381 0.91647 1.22420 1.00881 0.98366 1.00871 1.42865 1.20930 1.06027 1.69357 1.19026 1.04070 0.87456 1.26668 0.89237 1.24641 0.97954 0.95634 1.00587 1.69704 1.36991 1.01189 1.50165 0.86590 0.85363 0.77867 0.78965 1.21302 1.21757 1.20286 1.46176 1.66214 1.14800 1.09136 1.18663 0.79709 0.85738 0.82476 1.90787 1.46764 1.17963 1.82744 1.22660 0.90843 1.12400 0.98857 1.19003 0.88507 0.74184 0.73833 1.93249 1.83418 1.42736 1.95776 1.93174 1.91276 1.72548 1.58837 1.93213 1.94289 1.84054 1.43878 1.23303 1.00988 0.93205 0.99421 1.23165 1.03155 0.98578 0.90296 0.92621 0.89583 0.93250 0.91487 0.91714 0.93679 0.94233 0.92313 0.80628 0.93117 0.76729 0.86349 0.86316 0.86647 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.95 37.16 0.33 -2.10 16 2 C 0.15 2.26 2.54 -67.93 -0.17 2.08 16 3 H 0.10 1.91 7.53 -51.93 -0.39 1.52 16 4 C -0.13 -1.90 4.53 -26.73 -0.12 -2.03 16 5 C 0.18 3.16 2.58 -67.93 -0.18 2.98 16 6 H 0.07 1.20 5.93 -51.93 -0.31 0.89 16 7 C -0.17 -2.71 9.51 37.16 0.35 -2.36 16 8 N -0.75 -17.12 4.48 -53.43 -0.24 -17.35 16 9 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 10 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 11 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 12 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 13 Si 0.88 22.75 27.88 -169.99 -4.74 18.01 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 16 H -0.28 -6.81 6.32 56.52 0.36 -6.46 16 17 N -0.71 -9.01 4.71 -53.80 -0.25 -9.27 16 18 C 0.55 7.71 6.81 -10.99 -0.07 7.64 16 19 O -0.51 -9.33 16.23 5.56 0.09 -9.24 16 20 C -0.24 -2.48 2.04 -155.66 -0.32 -2.80 16 21 C 0.50 5.45 3.09 37.16 0.11 5.56 16 22 F -0.17 -2.25 17.32 2.25 0.04 -2.21 16 23 F -0.18 -1.66 15.94 2.25 0.04 -1.62 16 24 F -0.17 -1.96 16.29 2.25 0.04 -1.92 16 25 C -0.13 -0.85 9.65 -26.69 -0.26 -1.11 16 26 C -0.11 -0.91 9.57 -26.70 -0.26 -1.17 16 27 H 0.05 0.89 7.81 -51.93 -0.41 0.49 16 28 H 0.09 1.48 6.22 -51.93 -0.32 1.16 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.36 8.37 5.59 -40.82 -0.23 8.14 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.40 3.86 8.20 -40.82 -0.33 3.53 16 38 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.12 0.57 7.48 -51.93 -0.39 0.18 16 40 H 0.12 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.12 1.05 8.07 -51.93 -0.42 0.63 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -33.18 350.81 -5.57 -38.76 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.78 Total: 8.23 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.83 Total: -0.01 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.28 Total: -55.27 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.76 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.74 Total: 18.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.18 -5.57 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135525094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.209 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds