Wall clock time and date at job start Tue Mar 31 2020 09:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47024 * 2 1 4 4 C 1.53001 * 109.47164 * 120.00119 * 2 1 3 5 5 C 1.52996 * 109.47290 * 185.00210 * 4 2 1 6 6 H 1.09004 * 109.46713 * 304.99504 * 5 4 2 7 7 C 1.52995 * 109.47471 * 184.99832 * 5 4 2 8 8 N 1.46500 * 109.47261 * 64.99411 * 5 4 2 9 9 C 1.34783 * 119.99846 * 205.27681 * 8 5 4 10 10 O 1.21276 * 120.00137 * 354.78788 * 9 8 5 11 11 C 1.50704 * 119.99906 * 174.78817 * 9 8 5 12 12 C 1.52997 * 115.54882 * 294.18504 * 11 9 8 13 13 F 1.39906 * 109.47302 * 65.18595 * 12 11 9 14 14 F 1.39901 * 109.46942 * 185.18580 * 12 11 9 15 15 F 1.39905 * 109.47121 * 305.18669 * 12 11 9 16 16 C 1.52995 * 117.49698 * 148.51148 * 11 9 8 17 17 C 1.52998 * 117.49699 * 79.85116 * 11 9 8 18 18 N 1.46494 * 109.47101 * 239.99758 * 2 1 3 19 19 C 1.36945 * 120.00043 * 84.99848 * 18 2 1 20 20 H 1.07991 * 119.99661 * 0.02562 * 19 18 2 21 21 C 1.38806 * 119.99852 * 179.97438 * 19 18 2 22 22 N 1.31625 * 119.99856 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00563 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47027 * 89.99537 * 23 21 19 25 25 H 1.48503 * 109.47309 * 210.00028 * 23 21 19 26 26 H 1.48501 * 109.46663 * 330.00031 * 23 21 19 27 27 H 1.09000 * 109.47020 * 300.00345 * 1 2 3 28 28 H 1.09001 * 109.47154 * 60.00316 * 1 2 3 29 29 H 1.09001 * 109.47538 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47670 * 64.99588 * 4 2 1 31 31 H 1.09002 * 109.46674 * 304.99886 * 4 2 1 32 32 H 1.09000 * 109.46986 * 300.00070 * 7 5 4 33 33 H 1.09006 * 109.47181 * 59.99175 * 7 5 4 34 34 H 1.08994 * 109.47289 * 179.97438 * 7 5 4 35 35 H 0.96998 * 120.00166 * 25.00510 * 8 5 4 36 36 H 1.09000 * 117.50420 * 0.02562 * 16 11 9 37 37 H 1.09001 * 117.49706 * 145.02016 * 16 11 9 38 38 H 1.09000 * 117.50255 * 214.97955 * 17 11 9 39 39 H 1.09002 * 117.50220 * 359.97438 * 17 11 9 40 40 H 0.97000 * 120.00623 * 264.99861 * 18 2 1 41 41 H 0.97001 * 119.99760 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 1 3.9954 -0.9923 0.3868 7 6 4.0852 -1.4382 2.4925 8 7 3.9479 0.7894 1.4924 9 6 5.1591 1.2147 1.0816 10 8 5.9672 0.4194 0.6511 11 6 5.5092 2.6786 1.1572 12 6 4.6980 3.5991 0.2431 13 9 3.3578 3.5918 0.6445 14 9 5.2026 4.9013 0.3262 15 9 4.7919 3.1459 -1.0771 16 6 6.9742 3.0426 1.4063 17 6 5.9384 3.2329 2.5171 18 7 2.0183 -0.6906 -1.1961 19 6 2.1491 -0.0075 -2.3758 20 1 1.8926 1.0404 -2.4242 21 6 2.6123 -0.6618 -3.5089 22 7 2.7384 -0.0051 -4.6427 23 14 3.0566 -2.4743 -3.4251 24 1 1.8595 -3.2927 -3.7449 25 1 4.1324 -2.7662 -4.4062 26 1 3.5311 -2.8048 -2.0573 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.7517 -1.7715 1.2057 31 1 1.6054 -0.2617 2.1369 32 1 3.6546 -1.0593 3.4193 33 1 3.8000 -2.4819 2.3595 34 1 5.1714 -1.3617 2.5381 35 1 3.3285 1.4129 1.9028 36 1 7.6849 2.2234 1.5150 37 1 7.3601 3.9381 0.9192 38 1 5.6432 4.2536 2.7605 39 1 5.9671 2.5390 3.3572 40 1 2.2490 -1.6318 -1.1526 41 1 3.0625 -0.4623 -5.4345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135525095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:27 Heat of formation + Delta-G solvation = -156.509902 kcal Electronic energy + Delta-G solvation = -27743.607781 eV Core-core repulsion = 23437.700199 eV Total energy + Delta-G solvation = -4305.907583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.02022 -47.61400 -47.39252 -40.13376 -37.58477 -36.39738 -34.61638 -32.14183 -30.88448 -29.20671 -27.28984 -26.43572 -23.91030 -23.21375 -22.94702 -21.02559 -20.31042 -19.83755 -18.68980 -18.23667 -18.13350 -17.52262 -16.25958 -16.11134 -14.98549 -14.86273 -14.56857 -14.35197 -14.22971 -14.05122 -13.94728 -13.88399 -13.63774 -13.59366 -13.54462 -13.04106 -12.65510 -12.39470 -12.37557 -12.17030 -11.97130 -11.93852 -11.75102 -11.29676 -11.06082 -11.03805 -10.90104 -10.64264 -10.50538 -10.26557 -9.94136 -9.84308 -9.50298 -8.91317 -8.85786 -7.19198 -5.67862 -3.03073 2.23325 2.76365 2.99118 3.16036 3.43852 3.45755 3.51741 3.71399 3.99956 4.17562 4.40957 4.61136 4.67071 4.72907 4.95447 5.15003 5.18084 5.23091 5.29992 5.48722 5.49265 5.61099 5.68495 5.74620 5.78368 5.85085 5.99853 6.18625 6.20921 6.32405 6.43568 6.48688 6.64688 6.83240 7.01112 7.56327 8.07537 8.25567 8.50678 9.28959 10.01538 10.20302 11.50706 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.005960 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.793737 B = 4696.753723 C = 5259.904992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.055 0.945 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.101 0.899 7 C -0.161 4.161 8 N -0.705 5.705 9 C 0.561 3.439 10 O -0.513 6.513 11 C -0.238 4.238 12 C 0.497 3.503 13 F -0.175 7.175 14 F -0.181 7.181 15 F -0.158 7.158 16 C -0.116 4.116 17 C -0.133 4.133 18 N -0.745 5.745 19 C -0.237 4.237 20 H 0.088 0.912 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.882 3.118 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.277 1.277 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.359 0.641 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 6.078 19.573 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.039 3.961 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.356 5.356 9 C 0.343 3.657 10 O -0.387 6.387 11 C -0.243 4.243 12 C 0.443 3.557 13 F -0.156 7.156 14 F -0.162 7.162 15 F -0.139 7.139 16 C -0.153 4.153 17 C -0.170 4.170 18 N -0.388 5.388 19 C -0.367 4.367 20 H 0.106 0.894 21 C -0.190 4.190 22 N -0.582 5.582 23 Si 0.712 3.288 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.203 1.203 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.234 0.766 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.192 0.808 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.741 5.674 19.023 20.410 hybrid contribution -0.288 -0.827 -0.235 0.906 sum 4.454 4.847 18.788 19.908 Atomic orbital electron populations 1.22408 0.98877 1.00792 1.00391 1.20215 0.91902 0.95897 0.85451 0.92701 1.22230 0.93490 1.02284 0.99342 1.21097 0.95376 0.79802 0.99832 0.88115 1.22185 1.01678 1.00090 0.98005 1.45904 1.16069 1.11904 1.61736 1.18555 0.82740 0.86495 0.77869 1.90736 1.48804 1.54766 1.44397 1.22625 1.03070 0.95240 1.03362 1.18993 0.77938 0.78550 0.80262 1.93195 1.35576 1.96353 1.90495 1.93155 1.87190 1.39609 1.96270 1.93354 1.95805 1.88493 1.36208 1.23178 0.88428 1.04339 0.99378 1.23225 1.00797 1.03141 0.89848 1.42775 1.79606 1.09296 1.07169 1.19008 1.36738 0.95432 0.85495 0.89416 1.24638 1.01439 0.97299 0.95638 1.69703 1.52789 1.35422 1.00247 0.86586 0.77959 0.87125 0.77080 1.21299 1.21862 1.20336 0.94357 0.92369 0.93633 0.90518 0.91412 0.92786 0.91675 0.92315 0.76635 0.86033 0.86494 0.86590 0.86595 0.80807 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.23 2.84 -67.93 -0.19 3.03 16 3 H 0.05 1.08 7.56 -51.93 -0.39 0.69 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.17 2.48 -67.94 -0.17 2.00 16 6 H 0.10 1.99 7.13 -51.93 -0.37 1.62 16 7 C -0.16 -1.98 9.49 37.15 0.35 -1.63 16 8 N -0.71 -10.05 4.35 -53.81 -0.23 -10.29 16 9 C 0.56 8.99 6.83 -10.98 -0.08 8.91 16 10 O -0.51 -10.18 16.40 5.56 0.09 -10.09 16 11 C -0.24 -3.06 2.02 -155.66 -0.31 -3.38 16 12 C 0.50 7.35 3.06 37.16 0.11 7.46 16 13 F -0.17 -2.55 16.58 2.25 0.04 -2.52 16 14 F -0.18 -2.34 15.90 2.25 0.04 -2.31 16 15 F -0.16 -3.06 17.12 2.25 0.04 -3.02 16 16 C -0.12 -1.17 9.48 -26.70 -0.25 -1.42 16 17 C -0.13 -1.09 9.70 -26.69 -0.26 -1.35 16 18 N -0.75 -17.47 4.30 -53.43 -0.23 -17.70 16 19 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -30.23 13.97 55.49 0.78 -29.45 16 23 Si 0.88 22.96 27.74 -169.99 -4.71 18.24 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.79 8.12 -51.93 -0.42 0.36 16 35 H 0.40 4.73 7.98 -40.82 -0.33 4.41 16 36 H 0.12 1.24 8.00 -51.93 -0.42 0.82 16 37 H 0.12 1.03 7.63 -51.93 -0.40 0.63 16 38 H 0.12 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 41 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -34.76 354.18 -5.61 -40.37 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.94 Total: 9.14 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -0.81 Total: 2.28 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.31 Total: -57.44 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.11 Total: -7.84 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.76 -5.61 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135525095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.137 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds