Wall clock time and date at job start Tue Mar 31 2020 09:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47914 * 2 1 4 4 C 1.53001 * 109.47263 * 239.99589 * 2 1 3 5 5 C 1.52998 * 109.47457 * 175.00012 * 4 2 1 6 6 H 1.09006 * 109.46917 * 55.00353 * 5 4 2 7 7 C 1.52996 * 109.47114 * 175.00213 * 5 4 2 8 8 N 1.46502 * 109.47432 * 295.00657 * 5 4 2 9 9 C 1.34771 * 120.00290 * 155.00096 * 8 5 4 10 10 O 1.21288 * 119.99712 * 354.98883 * 9 8 5 11 11 C 1.50700 * 120.00112 * 174.99495 * 9 8 5 12 12 C 1.52996 * 115.55017 * 303.86728 * 11 9 8 13 13 F 1.39900 * 109.47033 * 65.56023 * 12 11 9 14 14 F 1.39901 * 109.47187 * 185.56453 * 12 11 9 15 15 F 1.39904 * 109.47194 * 305.56477 * 12 11 9 16 16 C 1.53002 * 117.49601 * 158.19707 * 11 9 8 17 17 C 1.53001 * 117.49761 * 89.54005 * 11 9 8 18 18 N 1.46500 * 109.47091 * 120.00431 * 2 1 3 19 19 C 1.36947 * 119.99417 * 274.99769 * 18 2 1 20 20 H 1.07993 * 119.99904 * 359.97438 * 19 18 2 21 21 C 1.38814 * 119.99588 * 179.97438 * 19 18 2 22 22 N 1.31619 * 120.00326 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99621 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46831 * 90.00549 * 23 21 19 25 25 H 1.48506 * 109.47021 * 210.00302 * 23 21 19 26 26 H 1.48506 * 109.47455 * 330.00231 * 23 21 19 27 27 H 1.08997 * 109.47032 * 300.00595 * 1 2 3 28 28 H 1.09004 * 109.46867 * 59.99658 * 1 2 3 29 29 H 1.08995 * 109.47634 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47126 * 55.00306 * 4 2 1 31 31 H 1.08997 * 109.47375 * 295.00501 * 4 2 1 32 32 H 1.09008 * 109.47238 * 180.02562 * 7 5 4 33 33 H 1.09007 * 109.47694 * 300.00133 * 7 5 4 34 34 H 1.08994 * 109.47487 * 60.00342 * 7 5 4 35 35 H 0.97002 * 119.99186 * 334.71783 * 8 5 4 36 36 H 1.09005 * 117.50196 * 0.02562 * 16 11 9 37 37 H 1.09003 * 117.49277 * 145.01870 * 16 11 9 38 38 H 1.08994 * 117.49657 * 214.97743 * 17 11 9 39 39 H 1.09001 * 117.50161 * 359.97438 * 17 11 9 40 40 H 0.96999 * 120.00726 * 94.99565 * 18 2 1 41 41 H 0.96996 * 119.99845 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1612 1.2133 -1.0867 10 8 5.9004 0.4574 -0.4923 11 6 5.5994 2.6268 -1.3715 12 6 5.5732 3.0418 -2.8439 13 9 4.2517 3.0485 -3.3030 14 9 6.1198 4.3227 -2.9772 15 9 6.3242 2.1336 -3.5979 16 6 6.7042 3.2148 -0.4913 17 6 5.2597 3.6951 -0.3302 18 7 2.0183 -0.6907 1.1961 19 6 2.1491 -0.0075 2.3758 20 1 1.8926 1.0404 2.4241 21 6 2.6113 -0.6620 3.5093 22 7 2.9243 -1.9391 3.4502 23 14 2.7903 0.2701 5.1182 24 1 1.5226 0.1798 5.8862 25 1 3.8946 -0.3238 5.9140 26 1 3.0963 1.6951 4.8334 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6054 -0.2618 -2.1370 31 1 1.7516 -1.7716 -1.2055 32 1 5.1715 -1.3619 -2.5381 33 1 3.8000 -2.4822 -2.3595 34 1 3.6546 -1.0595 -3.4193 35 1 3.3300 1.4118 -1.9065 36 1 7.1144 2.5791 0.2935 37 1 7.4121 3.8976 -0.9613 38 1 5.0179 4.6936 -0.6941 39 1 4.7189 3.3757 0.5606 40 1 2.2489 -1.6319 1.1526 41 1 3.2476 -2.3963 4.2422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135525096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:31 Heat of formation + Delta-G solvation = -162.165833 kcal Electronic energy + Delta-G solvation = -27299.077791 eV Core-core repulsion = 22992.924949 eV Total energy + Delta-G solvation = -4306.152842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.33496 -47.88243 -47.78455 -40.05050 -37.47063 -36.26075 -34.49163 -32.17364 -30.74200 -28.59802 -27.43127 -26.32213 -23.96158 -23.52683 -22.84803 -20.95783 -20.33332 -19.72161 -18.83257 -18.54752 -18.30618 -17.17646 -16.16062 -16.00042 -14.97852 -14.85805 -14.67945 -14.57716 -14.37661 -14.25342 -14.02671 -13.97218 -13.95064 -13.78141 -13.48371 -12.99786 -12.78248 -12.42858 -12.17159 -12.03727 -11.81677 -11.73661 -11.61665 -11.08107 -11.02694 -11.00260 -10.83670 -10.62039 -10.42887 -10.23168 -9.90148 -9.77134 -9.61441 -8.87762 -8.79286 -6.91661 -5.72708 -3.00667 2.20720 2.64867 2.98359 3.23655 3.44492 3.48898 3.51536 3.53595 3.84693 4.10106 4.42991 4.53425 4.61826 4.68000 5.09975 5.26799 5.32267 5.39956 5.48793 5.61776 5.63566 5.69087 5.84597 5.88249 5.93089 6.02123 6.13073 6.29024 6.33958 6.43044 6.56716 6.67059 6.77512 6.90731 7.07595 7.65228 7.71761 8.34589 8.45679 9.56844 10.14516 10.48848 11.50065 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.004951 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.023747 B = 5653.680673 C = 6505.197590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.142 3.858 6 H 0.109 0.891 7 C -0.162 4.162 8 N -0.707 5.707 9 C 0.558 3.442 10 O -0.509 6.509 11 C -0.245 4.245 12 C 0.499 3.501 13 F -0.176 7.176 14 F -0.177 7.177 15 F -0.173 7.173 16 C -0.116 4.116 17 C -0.127 4.127 18 N -0.720 5.720 19 C -0.234 4.234 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.903 3.097 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.397 0.603 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 10.555 -14.983 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.127 0.873 7 C -0.220 4.220 8 N -0.358 5.358 9 C 0.341 3.659 10 O -0.383 6.383 11 C -0.250 4.250 12 C 0.444 3.556 13 F -0.157 7.157 14 F -0.158 7.158 15 F -0.154 7.154 16 C -0.153 4.153 17 C -0.164 4.164 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.734 3.266 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.209 1.209 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.232 0.768 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.011 10.096 -14.458 18.085 hybrid contribution -0.280 0.512 0.368 0.690 sum 3.730 10.607 -14.090 18.027 Atomic orbital electron populations 1.22452 0.99474 1.00829 0.99785 1.20221 0.91613 0.95503 0.86531 0.93677 1.22173 0.93481 1.02370 0.98954 1.21122 0.95430 0.79469 1.00092 0.87295 1.22199 1.01481 1.00318 0.98050 1.45948 1.15827 1.12157 1.61828 1.18537 0.82430 0.85517 0.79454 1.90769 1.53494 1.54657 1.39400 1.22693 1.14754 0.97941 0.89569 1.19106 0.73726 0.74630 0.88099 1.93179 1.35886 1.96176 1.90492 1.93172 1.85898 1.40254 1.96507 1.93224 1.76552 1.67159 1.78514 1.23211 0.91560 1.00942 0.99608 1.23282 0.99198 0.96055 0.97876 1.42399 1.77987 1.10570 1.05241 1.19142 1.36446 0.93642 0.87339 0.91548 1.24695 1.02236 0.95937 0.97909 1.69643 1.50895 1.08632 1.28743 0.86263 0.77231 0.78787 0.84318 1.21873 1.21825 1.20930 0.92900 0.94696 0.93508 0.91960 0.90416 0.92577 0.91436 0.92980 0.76817 0.85605 0.86717 0.86654 0.85789 0.78332 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.49 37.16 0.35 -2.50 16 2 C 0.17 3.20 2.84 -67.93 -0.19 3.00 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.31 2.56 -67.93 -0.17 2.13 16 6 H 0.11 2.28 6.99 -51.93 -0.36 1.92 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.90 16 8 N -0.71 -10.60 4.34 -53.81 -0.23 -10.83 16 9 C 0.56 9.15 6.93 -10.99 -0.08 9.08 16 10 O -0.51 -10.47 16.12 5.55 0.09 -10.38 16 11 C -0.24 -3.09 2.07 -155.66 -0.32 -3.41 16 12 C 0.50 5.84 3.06 37.16 0.11 5.95 16 13 F -0.18 -1.99 15.94 2.25 0.04 -1.95 16 14 F -0.18 -1.88 15.90 2.25 0.04 -1.85 16 15 F -0.17 -2.26 17.12 2.25 0.04 -2.22 16 16 C -0.12 -1.27 9.47 -26.69 -0.25 -1.52 16 17 C -0.13 -1.34 9.70 -26.69 -0.26 -1.59 16 18 N -0.72 -17.35 4.49 -53.43 -0.24 -17.59 16 19 C -0.23 -6.38 9.93 -15.05 -0.15 -6.53 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 23 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 5.09 7.32 -40.82 -0.30 4.79 16 36 H 0.13 1.54 7.84 -51.93 -0.41 1.14 16 37 H 0.11 0.99 7.62 -51.93 -0.40 0.59 16 38 H 0.12 0.94 7.95 -51.93 -0.41 0.53 16 39 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -31.70 355.63 -5.97 -37.67 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.94 Total: 11.57 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.82 Total: 0.16 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.25 Total: -55.87 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.02 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.70 -5.97 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135525096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.491 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds