Wall clock time and date at job start Tue Mar 31 2020 10:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47149 * 2 1 4 4 C 1.34231 * 117.00028 * 179.97438 * 3 2 1 5 5 O 1.20814 * 120.00062 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99673 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47077 * 174.30416 * 6 4 3 8 8 C 1.46902 * 110.99647 * 287.80117 * 7 6 4 9 9 C 1.50703 * 109.47037 * 294.65461 * 8 7 6 10 10 H 1.08004 * 120.00096 * 5.34380 * 9 8 7 11 11 C 1.37875 * 120.00081 * 185.33911 * 9 8 7 12 12 N 1.31516 * 120.00204 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00239 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47289 * 89.99641 * 13 11 9 15 15 H 1.48496 * 109.47334 * 210.00165 * 13 11 9 16 16 H 1.48507 * 109.46922 * 330.00080 * 13 11 9 17 17 C 1.46899 * 111.00285 * 163.84716 * 7 6 4 18 18 C 1.50698 * 109.47104 * 190.00057 * 17 7 6 19 19 C 1.38247 * 119.55850 * 94.99793 * 18 17 7 20 20 C 1.38541 * 119.21947 * 180.02562 * 19 18 17 21 21 C 1.39133 * 118.37511 * 0.27747 * 20 19 18 22 22 O 1.35913 * 120.47346 * 179.70098 * 21 20 19 23 23 C 1.42897 * 117.00323 * 180.02562 * 22 21 20 24 24 C 1.38703 * 119.05173 * 359.45646 * 21 20 19 25 25 N 1.31837 * 120.68513 * 0.55118 * 24 21 20 26 26 H 1.09004 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47342 * 300.00308 * 1 2 3 28 28 H 1.09003 * 109.46929 * 60.00498 * 1 2 3 29 29 H 1.08997 * 109.47342 * 239.99692 * 2 1 3 30 30 H 1.09003 * 109.46929 * 119.99501 * 2 1 3 31 31 H 1.09003 * 109.47550 * 54.30090 * 6 4 3 32 32 H 1.09001 * 109.46996 * 294.30220 * 6 4 3 33 33 H 1.08996 * 109.47554 * 54.65661 * 8 7 6 34 34 H 1.09001 * 109.47038 * 174.65793 * 8 7 6 35 35 H 0.97000 * 120.00446 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.47435 * 69.99931 * 17 7 6 37 37 H 1.08994 * 109.46956 * 309.99856 * 17 7 6 38 38 H 1.07997 * 120.38920 * 0.04574 * 19 18 17 39 39 H 1.08002 * 120.81006 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47397 * 180.02562 * 23 22 21 41 41 H 1.09005 * 109.47075 * 300.00056 * 23 22 21 42 42 H 1.09000 * 109.47041 * 59.99778 * 23 22 21 43 43 H 1.08002 * 119.65575 * 180.25344 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 7 5.3812 2.8633 0.1382 8 6 5.7617 2.4686 1.5011 9 6 5.3492 3.5468 2.4699 10 1 4.7782 4.3953 2.1226 11 6 5.7006 3.4501 3.7996 12 7 6.3963 2.4172 4.2225 13 14 5.1888 4.7861 5.0006 14 1 3.8650 4.4481 5.5825 15 1 6.1959 4.8874 6.0872 16 1 5.0984 6.0852 4.2868 17 6 6.0108 4.1367 -0.2362 18 6 7.5042 3.9532 -0.3198 19 6 8.0905 3.6803 -1.5417 20 6 9.4640 3.5124 -1.6104 21 6 10.2029 3.6204 -0.4365 22 8 11.5521 3.4574 -0.4538 23 6 12.2369 3.5835 0.7941 24 6 9.5435 3.9017 0.7509 25 7 8.2342 4.0547 0.7735 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5050 3.5029 0.8340 32 1 3.6691 3.4343 -0.9370 33 1 5.2624 1.5355 1.7619 34 1 6.8416 2.3292 1.5509 35 1 6.6432 2.3489 5.1580 36 1 5.7790 4.8915 0.5152 37 1 5.6296 4.4594 -1.2050 38 1 7.4849 3.5992 -2.4323 39 1 9.9488 3.2988 -2.5516 40 1 13.3050 3.4316 0.6393 41 1 12.0674 4.5799 1.2024 42 1 11.8605 2.8359 1.4922 43 1 10.1079 3.9918 1.6673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144433992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:45 Heat of formation + Delta-G solvation = -71.428751 kcal Electronic energy + Delta-G solvation = -25714.683763 eV Core-core repulsion = 21954.322316 eV Total energy + Delta-G solvation = -3760.361447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29995 -39.84982 -38.11065 -36.70996 -35.52820 -32.40079 -31.98512 -31.61508 -30.75858 -27.98604 -27.46245 -26.62828 -24.48393 -23.06488 -22.86579 -22.08857 -20.78418 -19.64051 -17.89517 -17.28295 -16.69442 -16.52874 -16.24336 -15.68961 -15.52517 -15.14407 -14.81053 -14.56398 -14.11982 -13.96642 -13.85984 -13.46729 -12.98350 -12.82360 -12.69425 -12.51025 -12.29263 -11.88075 -11.80594 -11.57794 -11.34947 -11.30301 -11.18824 -10.99656 -10.82656 -10.74941 -10.37669 -10.14299 -9.94964 -9.69652 -9.52677 -9.27727 -8.73987 -8.27907 -8.01129 -7.24072 -5.90117 -3.96442 1.54156 1.72482 2.91035 3.09777 3.33359 3.35834 3.40070 3.42470 4.20705 4.49850 4.85035 4.97845 5.05120 5.06910 5.11328 5.16951 5.22520 5.26559 5.34789 5.42747 5.44016 5.44416 5.50799 5.70297 5.75783 5.85365 5.89051 5.91497 6.01103 6.04531 6.18319 6.25941 6.44407 6.67694 6.89204 6.92864 7.21576 7.44444 7.66193 7.93068 8.05593 8.20090 8.35919 8.49471 8.62899 9.08866 9.67606 11.16563 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.004656 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.164564 B = 6012.651993 C = 7804.804739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.466 3.534 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.525 5.525 8 C 0.186 3.814 9 C -0.538 4.538 10 H 0.054 0.946 11 C 0.072 3.928 12 N -0.887 5.887 13 Si 0.884 3.116 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.275 1.275 17 C 0.112 3.888 18 C 0.119 3.881 19 C -0.122 4.122 20 C -0.116 4.116 21 C 0.059 3.941 22 O -0.319 6.319 23 C 0.026 3.974 24 C 0.025 3.975 25 N -0.403 5.403 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 1.635 -10.869 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.372 6.372 6 C -0.061 4.061 7 N -0.251 5.251 8 C 0.061 3.939 9 C -0.577 4.577 10 H 0.072 0.928 11 C -0.130 4.130 12 N -0.525 5.525 13 Si 0.712 3.288 14 H -0.210 1.210 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.016 4.016 18 C -0.019 4.019 19 C -0.143 4.143 20 C -0.143 4.143 21 C 0.012 3.988 22 O -0.231 6.231 23 C -0.070 4.070 24 C -0.135 4.135 25 N -0.112 5.112 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.371 0.993 -10.397 10.451 hybrid contribution 0.046 0.858 0.997 1.316 sum 0.417 1.851 -9.401 9.590 Atomic orbital electron populations 1.21781 0.93193 1.02463 1.03283 1.22875 0.94813 0.81173 1.02326 1.86480 1.25604 1.31550 1.84997 1.23802 0.79743 0.93287 0.72441 1.90632 1.60017 1.42933 1.43622 1.21410 0.91482 0.89775 1.03452 1.62293 1.03693 1.27762 1.31305 1.19897 0.98364 0.95490 0.80115 1.21524 1.35014 1.07306 0.93874 0.92835 1.24821 0.94788 0.95240 0.98163 1.69958 1.37998 1.29116 1.15464 0.86736 0.78091 0.82707 0.81232 1.20982 1.21352 1.19990 1.20754 0.87881 0.92874 1.00125 1.21001 0.96326 0.96725 0.87880 1.21786 0.93770 0.99271 0.99443 1.20757 0.93349 1.03384 0.96796 1.20099 0.83414 0.99484 0.95803 1.85999 1.16727 1.86996 1.33418 1.23052 0.97052 1.01647 0.85210 1.22957 0.91728 1.02492 0.96291 1.67634 1.04881 1.08662 1.29985 0.90709 0.91532 0.91770 0.91728 0.91429 0.89393 0.88640 0.95213 0.93249 0.93154 0.91228 0.91246 0.84565 0.84774 0.88435 0.92598 0.92289 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.29 10.22 -39.26 -0.40 -6.69 16 4 C 0.47 9.21 7.53 36.01 0.27 9.48 16 5 O -0.49 -11.22 14.91 -18.74 -0.28 -11.50 16 6 C 0.07 1.27 5.43 -4.98 -0.03 1.24 16 7 N -0.53 -11.25 4.29 -238.96 -1.03 -12.28 16 8 C 0.19 4.93 4.49 -4.97 -0.02 4.91 16 9 C -0.54 -14.62 7.33 -34.44 -0.25 -14.87 16 10 H 0.05 1.40 5.97 -52.48 -0.31 1.09 16 11 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 12 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 13 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.11 2.10 5.04 -4.98 -0.03 2.07 16 18 C 0.12 2.29 5.69 -82.58 -0.47 1.82 16 19 C -0.12 -1.94 9.71 -39.47 -0.38 -2.32 16 20 C -0.12 -1.76 10.13 -39.14 -0.40 -2.16 16 21 C 0.06 0.96 6.71 -39.08 -0.26 0.70 16 22 O -0.32 -4.59 10.51 -19.47 -0.20 -4.79 16 23 C 0.03 0.28 9.82 101.05 0.99 1.27 16 24 C 0.02 0.45 10.22 -17.38 -0.18 0.27 16 25 N -0.40 -8.60 8.87 -9.35 -0.08 -8.68 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.09 1.72 6.46 -51.93 -0.34 1.38 16 32 H 0.10 1.39 7.81 -51.93 -0.41 0.98 16 33 H 0.03 0.89 6.58 -51.93 -0.34 0.55 16 34 H 0.05 1.45 6.43 -51.93 -0.33 1.11 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.44 6.31 -51.93 -0.33 1.11 16 37 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 38 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 42 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 43 H 0.15 2.50 6.32 -52.49 -0.33 2.17 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -34.48 359.24 -7.21 -41.69 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.11 Total: 1.74 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.24 Total: 4.31 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.37 Total: -46.82 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.89 Total: -22.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.48 -7.21 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144433992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.744 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds