Wall clock time and date at job start Tue Mar 31 2020 10:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47181 * 2 1 4 4 C 1.36003 * 116.99644 * 180.02562 * 3 2 1 5 5 C 1.38139 * 120.00540 * 0.02562 * 4 3 2 6 6 C 1.39734 * 119.84952 * 179.97438 * 5 4 3 7 7 C 1.47614 * 120.06771 * 179.97438 * 6 5 4 8 8 O 1.21584 * 120.00081 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99491 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99520 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46760 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47111 * 179.97438 * 11 10 9 13 13 C 1.36932 * 120.00292 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00010 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00144 * 179.97438 * 13 12 11 16 16 N 1.31627 * 120.00037 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00014 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47354 * 89.99276 * 17 15 13 19 19 H 1.48507 * 109.46974 * 209.99667 * 17 15 13 20 20 H 1.48500 * 109.46766 * 329.99284 * 17 15 13 21 21 C 1.39696 * 119.86040 * 0.02562 * 6 5 4 22 22 C 1.37792 * 120.00209 * 359.73587 * 21 6 5 23 23 C 1.38837 * 120.14891 * 0.51480 * 22 21 6 24 24 O 1.35794 * 119.92685 * 179.76121 * 23 22 21 25 25 C 1.42905 * 117.00343 * 359.72576 * 24 23 22 26 26 H 1.09004 * 109.47397 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47230 * 299.99516 * 1 2 3 28 28 H 1.08998 * 109.47652 * 59.99902 * 1 2 3 29 29 H 1.09006 * 109.46932 * 240.00052 * 2 1 3 30 30 H 1.09000 * 109.47357 * 120.00534 * 2 1 3 31 31 H 1.07996 * 120.07876 * 359.96499 * 5 4 3 32 32 H 0.96999 * 120.00372 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.46984 * 299.99566 * 10 9 7 34 34 H 1.08992 * 109.47268 * 59.99498 * 10 9 7 35 35 H 1.09003 * 109.47055 * 299.99568 * 11 10 9 36 36 H 1.08999 * 109.47673 * 60.00161 * 11 10 9 37 37 H 0.96999 * 119.99757 * 359.97438 * 12 11 10 38 38 H 0.96997 * 119.99804 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.00514 * 180.02562 * 21 6 5 40 40 H 1.08007 * 119.92526 * 180.25766 * 22 21 6 41 41 H 1.09001 * 109.47103 * 300.00227 * 25 24 23 42 42 H 1.09004 * 109.47054 * 59.99731 * 25 24 23 43 43 H 1.09000 * 109.47187 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1961 0.4299 -0.0016 6 6 5.5809 0.6166 -0.0027 7 6 6.4846 -0.5506 -0.0032 8 8 6.0242 -1.6759 -0.0032 9 7 7.8201 -0.3687 -0.0038 10 6 8.7170 -1.5272 -0.0049 11 6 10.1697 -1.0472 -0.0060 12 7 11.0667 -2.2056 -0.0065 13 6 12.4235 -2.0209 -0.0080 14 1 12.8325 -1.0213 -0.0083 15 6 13.2733 -3.1185 -0.0079 16 7 14.5776 -2.9410 -0.0098 17 14 12.5660 -4.8474 -0.0065 18 1 12.3775 -5.3063 -1.4062 19 1 13.5014 -5.7643 0.6934 20 1 11.2569 -4.8461 0.6945 21 6 6.1083 1.9102 -0.0022 22 6 5.2634 2.9987 -0.0061 23 6 3.8875 2.8135 0.0002 24 8 3.0590 3.8894 0.0012 25 6 3.6720 5.1803 0.0017 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7847 -0.5687 -0.0014 32 1 8.1874 0.5290 -0.0042 33 1 8.5336 -2.1295 0.8849 34 1 8.5327 -2.1285 -0.8950 35 1 10.3528 -0.4451 -0.8960 36 1 10.3544 -0.4457 0.8840 37 1 10.6994 -3.1033 -0.0057 38 1 15.1714 -3.7080 -0.0094 39 1 7.1782 2.0573 -0.0034 40 1 5.6725 3.9983 -0.0099 41 1 4.2925 5.2876 0.8914 42 1 4.2917 5.2886 -0.8886 43 1 2.8996 5.9494 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150414535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:07 Heat of formation + Delta-G solvation = -68.475167 kcal Electronic energy + Delta-G solvation = -24335.761545 eV Core-core repulsion = 20575.528176 eV Total energy + Delta-G solvation = -3760.233370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06154 -39.60693 -38.92015 -36.92911 -35.87851 -34.01656 -32.33996 -31.50554 -30.82054 -30.06894 -28.42588 -27.39214 -24.52206 -23.89327 -23.02648 -21.81873 -21.48378 -20.58350 -19.15124 -18.00196 -17.65612 -17.01562 -16.63037 -16.61207 -15.87094 -15.65196 -15.44866 -15.10244 -14.67579 -14.49944 -14.01305 -13.89484 -13.75195 -13.50596 -13.44302 -12.97907 -12.92256 -12.65757 -12.44496 -12.41897 -11.68057 -11.63687 -11.52730 -11.43648 -11.37871 -11.06216 -10.97638 -10.86453 -10.17810 -10.01016 -9.64123 -9.18592 -9.06086 -8.91664 -8.20400 -7.32469 -5.81772 -3.19340 0.57434 0.95927 2.69855 2.79529 2.83559 3.11960 3.37305 3.40962 3.44984 3.57947 4.34096 4.48149 4.51657 4.56113 4.60526 4.70662 4.71881 4.76673 4.86563 4.88051 4.96591 5.09988 5.22794 5.28842 5.34763 5.42602 5.45349 5.55648 5.62307 5.63410 5.71599 5.79839 5.93321 5.96654 6.16990 6.34079 6.55878 6.58837 6.66494 7.17858 7.48907 7.91375 8.18129 8.36218 9.13791 9.86120 10.04376 11.35981 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.002399 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.120782 B =11667.999813 C =12897.766218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.305 6.305 4 C 0.093 3.907 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.559 3.441 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.107 3.893 11 C 0.148 3.852 12 N -0.752 5.752 13 C -0.249 4.249 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.275 1.275 21 C -0.079 4.079 22 C -0.181 4.181 23 C 0.123 3.877 24 O -0.303 6.303 25 C 0.024 3.976 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.149 0.851 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.867 15.261 0.021 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.219 6.219 4 C 0.048 3.952 5 C -0.135 4.135 6 C -0.133 4.133 7 C 0.346 3.654 8 O -0.419 6.419 9 N -0.368 5.368 10 C -0.016 4.016 11 C 0.020 3.980 12 N -0.399 5.399 13 C -0.379 4.379 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.579 5.579 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.202 1.202 21 C -0.098 4.098 22 C -0.200 4.200 23 C 0.076 3.924 24 O -0.216 6.216 25 C -0.071 4.071 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.196 0.804 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.305 14.699 0.022 31.894 hybrid contribution 0.271 -0.875 0.011 0.916 sum -28.034 13.824 0.033 31.257 Atomic orbital electron populations 1.21754 0.92544 1.02902 1.03491 1.22865 0.96061 0.81805 1.01827 1.86166 1.17489 1.29189 1.89048 1.18022 0.83499 0.90726 1.02980 1.21154 0.92406 0.98444 1.01471 1.19648 0.93313 0.93244 1.07052 1.18076 0.82182 0.88534 0.76627 1.90776 1.76336 1.24709 1.50102 1.45795 1.05605 1.10685 1.74744 1.21635 0.89605 0.87756 1.02641 1.20735 0.86487 0.91417 0.99333 1.42527 1.03451 1.02543 1.91354 1.19002 0.79958 0.95116 1.43781 0.89081 1.24682 0.95105 0.97526 1.01650 1.69702 1.01276 1.29833 1.57065 0.86538 0.78276 0.85755 0.77939 1.20907 1.21582 1.20154 1.21052 1.00025 0.90878 0.97830 1.21006 0.90895 1.00480 1.07603 1.18490 0.89035 0.85437 0.99400 1.86147 1.33978 1.13205 1.88286 1.23141 1.00094 0.82335 1.01563 0.90264 0.91524 0.91517 0.91756 0.91759 0.83358 0.76420 0.91145 0.91142 0.94840 0.94901 0.80360 0.92928 0.84754 0.83971 0.92377 0.92386 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.15 0.38 -0.55 16 2 C 0.05 0.41 5.46 37.15 0.20 0.61 16 3 O -0.30 -3.40 9.92 -34.41 -0.34 -3.74 16 4 C 0.09 1.06 6.69 -39.19 -0.26 0.80 16 5 C -0.12 -1.35 8.58 -39.06 -0.33 -1.68 16 6 C -0.13 -1.53 5.87 -104.97 -0.62 -2.15 16 7 C 0.56 8.07 7.76 -12.43 -0.10 7.97 16 8 O -0.54 -9.69 16.34 5.29 0.09 -9.61 16 9 N -0.72 -9.46 5.51 -61.32 -0.34 -9.80 16 10 C 0.11 1.72 5.79 -4.04 -0.02 1.70 16 11 C 0.15 2.72 6.37 -4.04 -0.03 2.70 16 12 N -0.75 -17.78 5.41 -59.91 -0.32 -18.11 16 13 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 14 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 17 Si 0.89 22.14 27.74 -169.99 -4.71 17.43 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C -0.08 -0.73 9.53 -39.20 -0.37 -1.10 16 22 C -0.18 -1.53 9.01 -39.52 -0.36 -1.89 16 23 C 0.12 1.28 6.71 -38.93 -0.26 1.01 16 24 O -0.30 -2.98 10.26 -33.76 -0.35 -3.32 16 25 C 0.02 0.12 9.81 101.05 0.99 1.12 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.15 1.71 5.87 -52.49 -0.31 1.40 16 32 H 0.40 4.09 6.49 -40.82 -0.26 3.83 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.13 0.92 6.39 -52.49 -0.34 0.58 16 40 H 0.14 0.79 6.27 -52.48 -0.33 0.46 16 41 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 42 H 0.06 0.24 7.64 -51.93 -0.40 -0.15 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -35.59 360.39 -6.83 -42.41 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.03 Total: 6.15 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.03 Total: 1.48 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.11 Total: -56.23 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.60 Total: -16.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.59 -6.83 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150414535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.064 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds