Wall clock time and date at job start Tue Mar 31 2020 10:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.46682 * 2 1 4 4 C 1.34234 * 116.99442 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00514 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99552 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47076 * 186.18717 * 6 4 3 8 8 C 1.46894 * 110.99996 * 199.98633 * 7 6 4 9 9 C 1.50705 * 109.47012 * 169.99938 * 8 7 6 10 10 H 1.08000 * 119.99719 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99782 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00284 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99490 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47317 * 60.00465 * 13 11 9 15 15 H 1.48509 * 109.46800 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47377 * 299.99997 * 13 11 9 17 17 C 1.39250 * 110.99713 * 76.02603 * 7 6 4 18 18 N 1.32306 * 119.73038 * 57.31337 * 17 7 6 19 19 C 1.32009 * 121.67363 * 180.02562 * 18 17 7 20 20 C 1.50710 * 119.51954 * 179.97438 * 19 18 17 21 21 C 1.38010 * 120.96264 * 0.27349 * 19 18 17 22 22 C 1.38859 * 119.36366 * 359.45721 * 21 19 18 23 23 C 1.38704 * 118.45746 * 0.52919 * 22 21 19 24 24 O 1.36005 * 120.50115 * 179.75687 * 23 22 21 25 25 C 1.42904 * 116.99508 * 354.67796 * 24 23 22 26 26 H 1.08997 * 109.47203 * 300.00035 * 1 2 3 27 27 H 1.08996 * 109.47311 * 60.00148 * 1 2 3 28 28 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47203 * 239.99965 * 2 1 3 30 30 H 1.09005 * 109.46838 * 119.99465 * 2 1 3 31 31 H 1.09000 * 109.47112 * 66.18962 * 6 4 3 32 32 H 1.08997 * 109.46966 * 306.18750 * 6 4 3 33 33 H 1.08998 * 109.47183 * 289.99387 * 8 7 6 34 34 H 1.08996 * 109.47265 * 49.99963 * 8 7 6 35 35 H 0.97000 * 120.00187 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47042 * 89.99976 * 20 19 18 37 37 H 1.09001 * 109.46861 * 210.00109 * 20 19 18 38 38 H 1.09000 * 109.46918 * 330.00360 * 20 19 18 39 39 H 1.07999 * 120.32243 * 179.70080 * 21 19 18 40 40 H 1.08000 * 120.77315 * 180.23852 * 22 21 19 41 41 H 1.08994 * 109.47410 * 299.99877 * 25 24 23 42 42 H 1.09000 * 109.47155 * 60.00703 * 25 24 23 43 43 H 1.09003 * 109.47087 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 7 5.3801 2.8638 -0.1509 8 6 6.0197 4.1042 0.3073 9 6 7.5123 3.9059 0.3711 10 1 7.9426 2.9537 0.0982 11 6 8.3284 4.9404 0.7770 12 7 7.8044 6.1000 1.1089 13 14 10.1786 4.6948 0.8554 14 1 10.6890 4.3435 -0.4941 15 1 10.8252 5.9488 1.3188 16 1 10.4923 3.5967 1.8045 17 6 5.7328 2.5770 -1.4672 18 7 5.3264 3.3722 -2.4434 19 6 5.6378 3.1365 -3.7044 20 6 5.1482 4.0742 -4.7779 21 6 6.3999 2.0405 -4.0547 22 6 6.8535 1.1815 -3.0625 23 6 6.5116 1.4530 -1.7460 24 8 6.9293 0.6365 -0.7417 25 6 7.6228 -0.5544 -1.1200 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.6764 3.4321 0.9390 32 1 3.4985 3.5049 -0.8306 33 1 5.7898 4.9103 -0.3894 34 1 5.6447 4.3620 1.2977 35 1 8.3785 6.8277 1.3948 36 1 5.8823 4.8650 -4.9319 37 1 5.0091 3.5216 -5.7072 38 1 4.1993 4.5140 -4.4711 39 1 6.6445 1.8549 -5.0901 40 1 7.4547 0.3192 -3.3105 41 1 6.9757 -1.1682 -1.7465 42 1 8.5224 -0.2900 -1.6757 43 1 7.8989 -1.1135 -0.2259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:12 Heat of formation + Delta-G solvation = -67.996782 kcal Electronic energy + Delta-G solvation = -26674.103611 eV Core-core repulsion = 22913.890986 eV Total energy + Delta-G solvation = -3760.212625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48204 -39.79888 -37.70037 -36.74608 -35.69378 -32.60460 -31.77296 -31.59141 -30.92880 -28.42557 -27.86249 -26.11321 -25.33399 -23.33584 -22.92621 -21.42980 -21.09134 -20.15335 -17.57922 -17.38232 -16.85575 -16.51717 -16.20539 -15.67529 -15.32310 -15.25750 -14.60012 -14.27095 -14.05291 -13.91211 -13.68291 -13.35742 -13.29613 -13.02608 -12.75376 -12.29882 -12.18095 -11.98998 -11.93524 -11.75463 -11.55075 -11.45479 -11.34638 -10.91427 -10.82865 -10.71905 -10.64886 -10.34311 -10.04289 -9.91587 -9.29967 -9.21481 -9.12138 -8.42220 -7.65251 -7.47154 -6.00043 -3.99561 1.62406 1.81835 2.71502 2.90422 3.36153 3.39069 3.43244 3.79649 4.22243 4.37816 4.54593 4.91495 4.94341 4.95123 5.05470 5.12144 5.26672 5.27312 5.37057 5.47609 5.49135 5.58646 5.63486 5.69768 5.71558 5.75384 5.79278 5.88546 5.90079 5.92637 5.95283 6.17115 6.44806 6.48642 6.73965 6.87024 7.06242 7.36048 7.68759 7.76071 8.05744 8.20676 8.27786 8.43162 8.58478 9.07228 9.63024 11.11108 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.005372 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.654912 B = 5210.642434 C = 5770.068390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.367 6.367 4 C 0.454 3.546 5 O -0.478 6.478 6 C 0.066 3.934 7 N -0.464 5.464 8 C 0.201 3.799 9 C -0.504 4.504 10 H 0.065 0.935 11 C 0.059 3.941 12 N -0.898 5.898 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.315 3.685 18 N -0.476 5.476 19 C 0.086 3.914 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.178 4.178 23 C 0.124 3.876 24 O -0.265 6.265 25 C 0.025 3.975 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.013 0.987 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -11.100 -8.297 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.285 6.285 4 C 0.294 3.706 5 O -0.362 6.362 6 C -0.063 4.063 7 N -0.189 5.189 8 C 0.079 3.921 9 C -0.543 4.543 10 H 0.084 0.916 11 C -0.142 4.142 12 N -0.537 5.537 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.083 3.917 18 N -0.190 5.190 19 C -0.051 4.051 20 C -0.150 4.150 21 C -0.168 4.168 22 C -0.205 4.205 23 C 0.074 3.926 24 O -0.175 6.175 25 C -0.071 4.071 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.031 0.969 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.524 -10.880 -7.491 16.285 hybrid contribution 1.569 -0.502 -0.753 1.811 sum -7.955 -11.382 -8.244 16.149 Atomic orbital electron populations 1.21785 0.93050 1.02535 1.03404 1.22880 0.94938 0.81098 1.02207 1.86508 1.25494 1.31599 1.84942 1.24072 0.79943 0.93532 0.73038 1.90667 1.59846 1.42534 1.43137 1.21609 0.90073 0.89584 1.05062 1.59988 1.04300 1.40788 1.13815 1.19935 0.94459 0.82142 0.95600 1.21076 0.90447 0.98388 1.44343 0.91644 1.24899 0.98811 0.94997 0.95520 1.69934 1.35402 1.02754 1.45638 0.86579 0.85240 0.77340 0.78402 1.20464 1.21290 1.20062 1.19021 0.94148 0.89204 0.89315 1.67548 1.23038 1.27864 1.00558 1.20792 0.97574 0.95334 0.91441 1.20562 1.01872 0.97818 0.94748 1.21537 0.99842 0.95918 0.99536 1.21515 1.04307 1.02523 0.92120 1.19629 0.94412 0.91519 0.87078 1.86440 1.69612 1.31426 1.29981 1.23003 0.95521 0.86431 1.02108 0.91517 0.91648 0.90641 0.91826 0.91477 0.86524 0.89770 0.96881 0.94250 0.92867 0.90954 0.91555 0.91041 0.85431 0.84896 0.93579 0.93464 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.81 10.22 -39.27 -0.40 -6.21 16 4 C 0.45 8.46 7.74 36.01 0.28 8.74 16 5 O -0.48 -10.02 14.98 -19.88 -0.30 -10.32 16 6 C 0.07 1.27 5.56 -4.97 -0.03 1.25 16 7 N -0.46 -10.85 3.80 -175.74 -0.67 -11.51 16 8 C 0.20 5.35 4.66 -4.98 -0.02 5.33 16 9 C -0.50 -14.59 8.73 -34.44 -0.30 -14.89 16 10 H 0.07 1.94 7.00 -52.49 -0.37 1.57 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.32 7.11 3.90 -154.70 -0.60 6.51 16 18 N -0.48 -10.14 9.11 -8.51 -0.08 -10.22 16 19 C 0.09 1.54 6.78 -82.59 -0.56 0.98 16 20 C -0.09 -1.25 10.17 36.01 0.37 -0.89 16 21 C -0.15 -2.38 9.72 -39.43 -0.38 -2.76 16 22 C -0.18 -3.08 9.15 -39.18 -0.36 -3.43 16 23 C 0.12 2.61 5.89 -38.92 -0.23 2.38 16 24 O -0.26 -5.55 9.59 -19.81 -0.19 -5.74 16 25 C 0.03 0.38 9.85 101.05 1.00 1.37 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.12 2.06 7.73 -51.93 -0.40 1.66 16 32 H 0.08 1.58 7.36 -51.93 -0.38 1.20 16 33 H 0.01 0.38 7.84 -51.93 -0.41 -0.03 16 34 H 0.04 1.08 7.83 -51.93 -0.41 0.67 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.13 1.85 6.45 -52.49 -0.34 1.51 16 41 H 0.05 0.60 7.92 -51.93 -0.41 0.19 16 42 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 43 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -34.69 365.06 -7.21 -41.89 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.46 Total: -0.86 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.33 Total: 6.24 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.01 Total: -47.81 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.89 Total: -22.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.69 -7.21 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.102 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds