Wall clock time and date at job start Tue Mar 31 2020 10:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.47207 * 2 1 4 4 C 1.34223 * 116.99959 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.47079 * 180.02562 * 6 4 3 8 8 C 1.46496 * 119.99705 * 269.99483 * 7 6 4 9 9 C 1.50698 * 109.47226 * 270.00275 * 8 7 6 10 10 H 1.08001 * 119.99929 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99591 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99994 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47170 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47126 * 119.99698 * 13 11 9 16 16 H 1.48507 * 109.46852 * 239.99634 * 13 11 9 17 17 C 1.38994 * 120.00145 * 90.00000 * 7 6 4 18 18 C 1.39139 * 119.70410 * 184.99858 * 17 7 6 19 19 C 1.38305 * 119.09622 * 179.71969 * 18 17 7 20 20 C 1.50696 * 120.74563 * 180.23082 * 19 18 17 21 21 O 1.42901 * 109.47245 * 90.00589 * 20 19 18 22 22 C 1.42902 * 114.00198 * 180.02562 * 21 20 19 23 23 C 1.38879 * 118.50479 * 0.25546 * 19 18 17 24 24 C 1.38022 * 119.33137 * 359.97438 * 23 19 18 25 25 N 1.31967 * 120.85662 * 0.02562 * 24 23 19 26 26 H 1.09000 * 109.47078 * 59.99659 * 1 2 3 27 27 H 1.09005 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47050 * 300.00044 * 1 2 3 29 29 H 1.09004 * 109.46687 * 240.00244 * 2 1 3 30 30 H 1.09000 * 109.47078 * 120.00341 * 2 1 3 31 31 H 1.08994 * 109.47292 * 59.99659 * 6 4 3 32 32 H 1.09003 * 109.47030 * 299.99712 * 6 4 3 33 33 H 1.09002 * 109.47178 * 30.00067 * 8 7 6 34 34 H 1.08998 * 109.47191 * 150.00438 * 8 7 6 35 35 H 0.97006 * 119.99532 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.45446 * 0.02562 * 18 17 7 37 37 H 1.09004 * 109.47231 * 210.00557 * 20 19 18 38 38 H 1.09004 * 109.47348 * 330.00320 * 20 19 18 39 39 H 1.08997 * 109.47243 * 59.99420 * 22 21 20 40 40 H 1.08993 * 109.47288 * 180.02562 * 22 21 20 41 41 H 1.09007 * 109.46547 * 299.99646 * 22 21 20 42 42 H 1.08000 * 120.33669 * 179.97438 * 23 19 18 43 43 H 1.07997 * 119.57464 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3838 2.8606 -0.0014 8 6 6.1163 2.8214 1.2667 9 6 6.4419 4.2268 1.7024 10 1 6.1336 5.0654 1.0957 11 6 7.1334 4.4421 2.8758 12 7 7.5084 3.4209 3.6148 13 14 7.5363 6.1842 3.4162 14 1 7.0072 7.1473 2.4173 15 1 6.9134 6.4490 4.7380 16 1 9.0092 6.3413 3.5227 17 6 6.0768 2.8251 -1.2057 18 6 7.4567 2.6473 -1.2021 19 6 8.1329 2.6081 -2.4080 20 6 9.6265 2.4121 -2.4477 21 8 9.9221 1.0156 -2.5160 22 6 11.3193 0.7185 -2.5576 23 6 7.4044 2.7539 -3.5814 24 6 6.0376 2.9318 -3.5109 25 7 5.4185 2.9652 -2.3459 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.5852 3.4690 0.8904 32 1 3.5844 3.4700 -0.8895 33 1 5.5018 2.3386 2.0266 34 1 7.0405 2.2585 1.1352 35 1 7.9946 3.5724 4.4404 36 1 7.9920 2.5364 -0.2707 37 1 10.0356 2.9134 -3.3250 38 1 10.0725 2.8342 -1.5471 39 1 11.7999 1.1055 -1.6592 40 1 11.4598 -0.3611 -2.6091 41 1 11.7637 1.1848 -3.4370 42 1 7.9025 2.7284 -4.5394 43 1 5.4673 3.0461 -4.4209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:16 Heat of formation + Delta-G solvation = -84.365519 kcal Electronic energy + Delta-G solvation = -25567.159976 eV Core-core repulsion = 21806.237549 eV Total energy + Delta-G solvation = -3760.922427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17686 -39.59970 -37.68140 -36.57351 -35.48660 -32.98684 -32.41315 -31.71105 -30.02489 -28.61623 -27.39256 -26.03479 -25.32258 -23.45714 -23.10011 -21.71741 -21.20916 -19.73223 -17.43648 -16.91463 -16.65147 -16.33974 -16.28704 -16.19043 -15.71013 -15.16505 -15.06514 -14.85848 -14.43348 -13.99190 -13.73148 -13.65887 -13.33587 -12.88262 -12.73397 -12.42099 -12.22718 -12.11371 -11.89120 -11.51264 -11.43141 -11.38925 -11.32626 -11.16814 -10.94952 -10.64554 -10.35651 -10.31606 -10.13864 -9.82221 -9.60779 -9.24236 -8.99346 -8.87257 -8.55689 -6.87402 -6.13949 -4.24581 1.76926 1.95612 2.71377 2.93326 3.22009 3.30504 3.34976 3.81265 3.97595 4.34039 4.61249 4.97391 4.99697 5.00508 5.06072 5.16050 5.17038 5.26436 5.33164 5.35188 5.41194 5.49919 5.63127 5.67136 5.71413 5.74953 5.79109 5.88629 5.90441 5.95680 5.99666 6.33140 6.49850 6.76066 6.80108 6.96275 7.20085 7.23752 7.27104 7.63423 7.83257 8.06301 8.14857 8.30152 8.69647 8.88310 9.42636 10.89890 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.005753 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.582607 B = 4865.454831 C = 7518.602394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.442 3.558 5 O -0.499 6.499 6 C 0.143 3.857 7 N -0.572 5.572 8 C 0.254 3.746 9 C -0.537 4.537 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.421 3.579 18 C -0.192 4.192 19 C -0.018 4.018 20 C 0.105 3.895 21 O -0.383 6.383 22 C 0.031 3.969 23 C -0.233 4.233 24 C 0.138 3.862 25 N -0.555 5.555 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.143 0.857 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.121 0.879 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -3.240 -11.005 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.282 3.718 5 O -0.385 6.385 6 C 0.016 3.984 7 N -0.281 5.281 8 C 0.135 3.865 9 C -0.576 4.576 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.186 3.814 18 C -0.217 4.217 19 C -0.026 4.026 20 C 0.029 3.971 21 O -0.301 6.301 22 C -0.066 4.066 23 C -0.256 4.256 24 C -0.019 4.019 25 N -0.274 5.274 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.139 0.861 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.233 -3.631 -10.586 11.965 hybrid contribution 1.476 0.689 0.416 1.681 sum -2.757 -2.943 -10.170 10.940 Atomic orbital electron populations 1.21784 0.93001 1.02545 1.03379 1.22909 0.94982 0.81168 1.02280 1.86512 1.25383 1.31645 1.84637 1.25126 0.80070 0.94441 0.72114 1.90646 1.60286 1.43066 1.44485 1.20722 0.82319 0.89181 1.06212 1.46682 1.02695 1.74428 1.04330 1.19435 0.92229 0.97310 0.77486 1.21584 1.36711 0.92479 1.06789 0.91823 1.24959 0.95383 0.97391 0.96168 1.69957 1.38541 1.30100 1.14324 0.86437 0.78147 0.84291 0.78571 1.19619 1.20852 1.20877 1.18301 0.88366 0.88910 0.85856 1.21489 0.93813 1.07236 0.99140 1.19572 0.93998 0.95990 0.93014 1.21330 0.92153 0.82724 1.00930 1.87988 1.23502 1.23454 1.95191 1.22740 0.82294 1.01634 0.99890 1.21456 0.95424 1.10895 0.97829 1.22131 0.91626 0.93821 0.94334 1.67094 1.40678 1.21906 0.97726 0.91611 0.90655 0.91527 0.91691 0.91549 0.86439 0.86424 0.94638 0.94113 0.92558 0.83928 0.92441 0.91877 0.93889 0.89731 0.94296 0.86100 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.36 -5.94 10.22 -39.24 -0.40 -6.34 16 4 C 0.44 8.47 8.03 36.01 0.29 8.76 16 5 O -0.50 -11.21 16.18 -18.75 -0.30 -11.51 16 6 C 0.14 2.68 6.06 -5.19 -0.03 2.65 16 7 N -0.57 -12.63 2.06 -176.58 -0.36 -13.00 16 8 C 0.25 6.39 5.00 -5.20 -0.03 6.37 16 9 C -0.54 -14.17 9.39 -34.44 -0.32 -14.49 16 10 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 13 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.42 9.07 7.37 -155.03 -1.14 7.93 16 18 C -0.19 -4.03 8.97 -39.22 -0.35 -4.38 16 19 C -0.02 -0.32 5.54 -104.36 -0.58 -0.90 16 20 C 0.10 1.58 6.11 36.00 0.22 1.80 16 21 O -0.38 -6.08 10.69 -35.23 -0.38 -6.45 16 22 C 0.03 0.35 11.01 101.05 1.11 1.46 16 23 C -0.23 -3.71 9.81 -39.42 -0.39 -4.10 16 24 C 0.14 2.28 11.17 -17.57 -0.20 2.08 16 25 N -0.56 -10.86 9.08 -12.44 -0.11 -10.97 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.12 2.06 8.07 -51.93 -0.42 1.64 16 32 H 0.12 2.03 7.29 -51.93 -0.38 1.65 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.04 1.10 5.98 -51.93 -0.31 0.79 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.14 3.22 6.03 -52.49 -0.32 2.90 16 37 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -32.17 371.77 -7.60 -39.77 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.46 Total: 2.82 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.90 Total: 8.79 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.26 Total: -48.32 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.08 Total: -24.31 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.17 -7.60 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.595 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds