Wall clock time and date at job start Tue Mar 31 2020 09:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99790 * 2 1 4 4 C 1.39152 * 120.50689 * 359.97438 * 3 2 1 5 5 C 1.38306 * 118.62999 * 180.02562 * 4 3 2 6 6 C 1.39937 * 119.59449 * 0.02562 * 5 4 3 7 7 N 1.38911 * 119.49319 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00318 * 359.97438 * 7 6 5 9 9 H 1.08997 * 109.46895 * 325.00406 * 8 7 6 10 10 C 1.53002 * 109.46489 * 85.00257 * 8 7 6 11 11 C 1.50698 * 109.47408 * 205.00012 * 8 7 6 12 12 O 1.20829 * 119.99532 * 0.02562 * 11 8 7 13 13 O 1.34218 * 119.99908 * 180.02562 * 11 8 7 14 14 C 1.45202 * 116.99777 * 180.02562 * 13 11 8 15 15 C 1.53005 * 109.47216 * 90.00030 * 14 13 11 16 16 C 1.53001 * 109.46995 * 209.99681 * 14 13 11 17 17 N 1.31863 * 121.00864 * 359.71479 * 6 5 4 18 18 C 1.33824 * 121.47111 * 0.57294 * 17 6 5 19 19 C 1.40915 * 119.84802 * 179.71180 * 18 17 6 20 20 H 1.08002 * 120.00197 * 179.72939 * 19 18 17 21 21 C 1.40028 * 119.99903 * 359.44406 * 19 18 17 22 22 N 1.30774 * 120.00278 * 0.28207 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 180.27649 * 21 19 18 24 24 H 1.48504 * 109.47118 * 60.00518 * 23 21 19 25 25 H 1.48504 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47374 * 300.00624 * 23 21 19 27 27 H 1.08994 * 109.47365 * 59.99731 * 1 2 3 28 28 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46981 * 299.99570 * 1 2 3 30 30 H 1.07999 * 120.68356 * 0.04328 * 4 3 2 31 31 H 1.08004 * 120.19988 * 179.97438 * 5 4 3 32 32 H 0.97007 * 119.99733 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47430 * 60.00477 * 10 8 7 34 34 H 1.09006 * 109.46433 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47620 * 299.99793 * 10 8 7 36 36 H 1.08994 * 109.47184 * 329.99834 * 14 13 11 37 37 H 1.09000 * 109.46889 * 179.97438 * 15 14 13 38 38 H 1.08994 * 109.47317 * 299.99882 * 15 14 13 39 39 H 1.09004 * 109.47107 * 59.99951 * 15 14 13 40 40 H 1.09007 * 109.46718 * 60.00335 * 16 14 13 41 41 H 1.09002 * 109.47230 * 179.97438 * 16 14 13 42 42 H 1.08994 * 109.47279 * 300.00094 * 16 14 13 43 43 H 0.96996 * 120.00391 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3642 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0016 8 6 3.2734 6.0811 -0.0016 9 1 2.3652 5.9554 -0.5910 10 6 2.9017 6.4520 1.4355 11 6 4.1142 7.1783 -0.6020 12 8 5.2328 6.9381 -0.9905 13 8 3.6203 8.4220 -0.7051 14 6 4.4858 9.4281 -1.2941 15 6 4.2675 9.4658 -2.8081 16 6 4.1557 10.7976 -0.6971 17 7 4.0577 2.4892 0.0040 18 6 3.4543 1.2947 -0.0010 19 6 4.2291 0.1176 -0.0008 20 1 3.7447 -0.8477 -0.0004 21 6 5.6270 0.1995 -0.0072 22 7 6.2135 1.3683 -0.0077 23 14 6.6539 -1.3608 -0.0148 24 1 6.3357 -2.1570 -1.2274 25 1 8.0956 -1.0046 -0.0203 26 1 6.3470 -2.1615 1.1975 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2176 2.3479 -0.0003 31 1 1.4099 4.5196 -0.0019 32 1 5.0027 4.8490 -0.0015 33 1 3.8099 6.5777 2.0249 34 1 2.3362 7.3839 1.4355 35 1 2.2935 5.6585 1.8699 36 1 5.5262 9.1810 -1.0831 37 1 4.9169 10.2214 -3.2501 38 1 4.5027 8.4902 -3.2334 39 1 3.2270 9.7129 -3.0191 40 1 4.3113 10.7708 0.3814 41 1 4.8057 11.5529 -1.1389 42 1 3.1153 11.0447 -0.9081 43 1 7.1818 1.4251 -0.0118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163401693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:00 Heat of formation + Delta-G solvation = -83.157067 kcal Electronic energy + Delta-G solvation = -25514.444077 eV Core-core repulsion = 21753.574052 eV Total energy + Delta-G solvation = -3760.870025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61681 -38.84184 -37.39679 -36.61704 -35.08038 -33.48314 -33.12925 -30.61579 -30.19597 -28.05536 -27.51098 -26.36924 -25.32055 -24.57660 -22.10974 -21.50827 -20.68857 -19.93768 -17.88435 -17.44465 -16.96131 -16.45851 -16.09456 -15.73434 -15.10191 -14.72790 -14.60918 -14.46280 -14.24263 -13.89765 -13.39041 -13.11607 -12.90008 -12.71854 -12.54088 -12.44174 -12.33274 -12.19989 -11.98828 -11.86727 -11.55456 -11.39585 -11.18558 -11.13301 -11.08912 -10.63721 -10.59223 -10.45286 -10.41988 -10.15928 -9.79597 -9.44938 -8.52181 -8.01854 -7.65781 -6.35279 -6.32935 -4.34591 2.28785 2.53343 2.85086 3.14057 3.14394 3.17660 3.29706 4.01602 4.10515 4.58274 4.62548 4.64651 4.71138 4.82430 4.94423 5.23759 5.29077 5.29490 5.47836 5.54769 5.59708 5.78443 5.80959 5.81856 5.82052 5.93821 5.95654 5.99111 6.00344 6.10416 6.31263 6.40095 6.49004 6.66201 6.79952 7.21433 7.26909 7.45804 7.68025 7.82310 8.19812 8.28585 8.41988 8.67033 8.80868 9.17492 10.18534 10.37446 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003674 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.474247 B = 7619.412586 C = 8995.592352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.075 4.075 4 C -0.113 4.113 5 C -0.351 4.351 6 C 0.398 3.602 7 N -0.724 5.724 8 C 0.177 3.823 9 H 0.112 0.888 10 C -0.161 4.161 11 C 0.458 3.542 12 O -0.497 6.497 13 O -0.352 6.352 14 C 0.078 3.922 15 C -0.170 4.170 16 C -0.148 4.148 17 N -0.510 5.510 18 C 0.289 3.711 19 C -0.410 4.410 20 H 0.091 0.909 21 C 0.067 3.933 22 N -0.710 5.710 23 Si 0.909 3.091 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.265 1.265 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.406 0.594 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 13.311 -0.516 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.122 4.122 4 C -0.137 4.137 5 C -0.378 4.378 6 C 0.161 3.839 7 N -0.364 5.364 8 C 0.068 3.932 9 H 0.130 0.870 10 C -0.220 4.220 11 C 0.300 3.700 12 O -0.383 6.383 13 O -0.269 6.269 14 C 0.023 3.977 15 C -0.228 4.228 16 C -0.205 4.205 17 N -0.233 5.233 18 C 0.161 3.839 19 C -0.443 4.443 20 H 0.109 0.891 21 C -0.159 4.159 22 N -0.331 5.331 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.695 13.314 -0.654 13.832 hybrid contribution -0.284 -0.316 -0.163 0.455 sum -3.979 12.998 -0.817 13.618 Atomic orbital electron populations 1.22686 0.82184 1.01513 0.99654 1.85922 1.17844 1.27884 1.90871 1.20038 0.93421 0.83152 1.15638 1.20651 0.97290 0.92291 1.03490 1.20354 0.92629 0.96421 1.28375 1.18328 0.87550 0.86184 0.91866 1.43865 1.08399 1.00072 1.84062 1.20065 0.94001 0.81838 0.97333 0.87012 1.22246 1.02487 1.02465 0.94814 1.24108 0.86793 0.83419 0.75707 1.90666 1.20393 1.82118 1.45124 1.86560 1.47085 1.18871 1.74349 1.22718 0.94995 0.86744 0.93227 1.22211 1.02904 1.03207 0.94443 1.21878 1.03027 0.93905 1.01707 1.68342 1.34743 0.94876 1.25313 1.17746 0.85020 0.90909 0.90200 1.19522 0.90548 0.93116 1.41066 0.89067 1.26097 0.98780 0.97172 0.93847 1.70147 1.10436 1.24510 1.28056 0.86367 0.78332 0.82049 0.79938 1.18931 1.20368 1.18927 0.94488 0.90198 0.94478 0.88174 0.88806 0.75693 0.92147 0.91233 0.90174 0.89756 0.90833 0.91804 0.91520 0.91666 0.90525 0.91373 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.27 9.61 -18.55 -0.18 -7.45 16 3 C -0.07 -1.90 6.74 -38.11 -0.26 -2.16 16 4 C -0.11 -2.57 9.12 -39.22 -0.36 -2.92 16 5 C -0.35 -7.86 8.83 -38.92 -0.34 -8.20 16 6 C 0.40 9.68 7.63 -155.26 -1.18 8.49 16 7 N -0.72 -15.11 5.12 -54.99 -0.28 -15.39 16 8 C 0.18 2.87 2.77 -69.08 -0.19 2.68 16 9 H 0.11 1.74 6.43 -51.93 -0.33 1.41 16 10 C -0.16 -2.22 9.33 37.16 0.35 -1.88 16 11 C 0.46 7.28 7.30 36.00 0.26 7.54 16 12 O -0.50 -9.31 15.06 -18.75 -0.28 -9.59 16 13 O -0.35 -4.65 9.78 -39.23 -0.38 -5.03 16 14 C 0.08 0.85 3.18 -26.73 -0.09 0.77 16 15 C -0.17 -1.68 9.55 37.16 0.35 -1.33 16 16 C -0.15 -1.15 9.57 37.16 0.36 -0.80 16 17 N -0.51 -14.17 7.88 -10.20 -0.08 -14.25 16 18 C 0.29 8.12 6.56 -84.85 -0.56 7.56 16 19 C -0.41 -11.33 8.94 -37.90 -0.34 -11.67 16 20 H 0.09 2.44 7.31 -52.49 -0.38 2.05 16 21 C 0.07 1.73 5.50 -17.33 -0.10 1.64 16 22 N -0.71 -19.14 11.45 55.55 0.64 -18.51 16 23 Si 0.91 19.14 29.56 -169.99 -5.02 14.12 16 24 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 27 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.10 1.96 6.43 -52.49 -0.34 1.62 16 31 H 0.09 1.81 6.03 -52.48 -0.32 1.49 16 32 H 0.41 9.06 7.91 -40.82 -0.32 8.73 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.08 1.19 7.64 -51.93 -0.40 0.79 16 36 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.27 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -31.54 360.44 -7.46 -39.00 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.20 Total: 10.33 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.10 Total: 1.34 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.27 Total: -48.15 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.84 Total: -22.07 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.54 -7.46 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163401693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.155 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds