Wall clock time and date at job start Tue Mar 31 2020 09:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47065 * 2 1 4 4 C 1.50707 * 109.47060 * 120.00020 * 2 1 3 5 5 O 1.21276 * 119.99570 * 119.72541 * 4 2 1 6 6 N 1.34771 * 119.99753 * 299.99850 * 4 2 1 7 7 C 1.46497 * 119.99710 * 173.67033 * 6 4 2 8 8 C 1.53004 * 109.47073 * 184.87979 * 7 6 4 9 9 C 1.53009 * 109.46956 * 178.87500 * 8 7 6 10 10 C 1.53004 * 115.54855 * 40.03314 * 9 8 7 11 11 N 1.46499 * 109.46902 * 65.19683 * 10 9 8 12 12 C 1.36936 * 119.99664 * 185.11476 * 11 10 9 13 13 H 1.08008 * 120.00215 * 4.91441 * 12 11 10 14 14 C 1.38816 * 120.00300 * 184.91996 * 12 11 10 15 15 N 1.31617 * 120.00399 * 183.51997 * 14 12 11 16 16 Si 1.86799 * 119.99540 * 3.51235 * 14 12 11 17 17 H 1.48501 * 109.46772 * 91.25074 * 16 14 12 18 18 H 1.48501 * 109.47159 * 211.24516 * 16 14 12 19 19 H 1.48495 * 109.47668 * 331.25219 * 16 14 12 20 20 C 1.52993 * 117.50090 * 254.32296 * 9 8 7 21 21 C 1.52996 * 117.49510 * 185.69942 * 9 8 7 22 22 C 1.52997 * 109.47167 * 239.99823 * 2 1 3 23 23 F 1.39899 * 109.47323 * 300.00133 * 22 2 1 24 24 F 1.39906 * 109.47202 * 60.00205 * 22 2 1 25 25 F 1.39900 * 109.47086 * 179.97438 * 22 2 1 26 26 H 1.09003 * 109.47356 * 60.00344 * 1 2 3 27 27 H 1.09007 * 109.47343 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47660 * 300.00048 * 1 2 3 29 29 H 0.96994 * 120.00420 * 353.67852 * 6 4 2 30 30 H 1.08999 * 109.47444 * 304.87975 * 7 6 4 31 31 H 1.09005 * 109.46851 * 64.88472 * 7 6 4 32 32 H 1.08998 * 109.47307 * 298.87736 * 8 7 6 33 33 H 1.08995 * 109.46884 * 58.88021 * 8 7 6 34 34 H 1.08993 * 109.46658 * 185.19775 * 10 9 8 35 35 H 1.09001 * 109.46991 * 305.19669 * 10 9 8 36 36 H 0.97001 * 120.00290 * 5.11939 * 11 10 9 37 37 H 0.97000 * 120.00183 * 179.97438 * 15 14 12 38 38 H 1.09006 * 117.49561 * 0.02562 * 20 9 8 39 39 H 1.08994 * 117.50120 * 145.02627 * 20 9 8 40 40 H 1.09003 * 117.49915 * 214.98101 * 21 9 8 41 41 H 1.08999 * 117.49961 * 359.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7254 -1.6994 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 2.0767 -1.0156 3.6475 8 6 1.4883 -0.3418 4.8888 9 6 1.8512 -1.1568 6.1318 10 6 3.2714 -1.7256 6.1565 11 7 4.2372 -0.6254 6.2117 12 6 5.5790 -0.8879 6.1363 13 1 5.9229 -1.8958 5.9567 14 6 6.4974 0.1415 6.2909 15 7 7.7840 -0.0976 6.1498 16 14 5.9072 1.8662 6.6991 17 1 5.8754 2.0425 8.1732 18 1 6.8339 2.8609 6.1015 19 1 4.5432 2.0663 6.1472 20 6 0.7438 -1.9924 6.7768 21 6 1.2418 -0.7202 7.4655 22 6 2.0399 -0.7213 -1.2492 23 9 1.5736 -2.0403 -1.2492 24 9 1.5736 -0.0618 -2.3915 25 9 3.4389 -0.7207 -1.2495 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.2273 0.5883 2.5457 30 1 1.6853 -2.0294 3.5644 31 1 3.1628 -1.0513 3.7338 32 1 1.8951 0.6651 4.9829 33 1 0.4039 -0.2881 4.7934 34 1 3.3932 -2.3604 7.0341 35 1 3.4426 -2.3145 5.2554 36 1 3.9261 0.2890 6.3017 37 1 8.4257 0.6218 6.2575 38 1 -0.2433 -1.9618 6.3154 39 1 1.0267 -2.9477 7.2189 40 1 1.8524 -0.8385 8.3606 41 1 0.5827 0.1480 7.4574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166630107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:16 Heat of formation + Delta-G solvation = -160.922243 kcal Electronic energy + Delta-G solvation = -26202.271871 eV Core-core repulsion = 21896.172955 eV Total energy + Delta-G solvation = -4306.098916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.19989 -47.72840 -47.58679 -40.01337 -38.47293 -35.02210 -34.33682 -34.07730 -31.15143 -30.07932 -26.75024 -26.29478 -24.50614 -22.79619 -22.40400 -21.85005 -20.67021 -19.12743 -18.69654 -18.53429 -17.81028 -17.39564 -16.74193 -15.90523 -15.74514 -15.13359 -14.81308 -14.61885 -14.47462 -14.19872 -14.14067 -14.02602 -13.81263 -13.74634 -13.56471 -13.43209 -13.22736 -12.83710 -12.64856 -12.41642 -12.34098 -12.00658 -11.72458 -11.62352 -11.49172 -11.19040 -10.93241 -10.77218 -10.22370 -10.03324 -9.90015 -9.62082 -9.49679 -9.09139 -8.87657 -7.20614 -5.75129 -3.10516 2.35029 2.39295 2.90625 3.33406 3.38880 3.44031 3.49653 3.81641 3.87941 3.95131 4.43744 4.51121 4.59085 4.65469 4.78811 4.88713 4.99897 5.01358 5.15098 5.16199 5.33974 5.51241 5.52449 5.58851 5.65208 5.74625 5.83238 6.04010 6.12339 6.21895 6.27188 6.30678 6.38133 6.64896 6.70480 7.26977 7.99139 8.02743 8.44109 9.23820 9.95394 10.16260 11.43407 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.003919 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.969635 B = 7142.434000 C = 8364.060217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.165 4.165 3 H 0.139 0.861 4 C 0.518 3.482 5 O -0.512 6.512 6 N -0.719 5.719 7 C 0.117 3.883 8 C -0.085 4.085 9 C -0.128 4.128 10 C 0.189 3.811 11 N -0.751 5.751 12 C -0.242 4.242 13 H 0.089 0.911 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.886 3.114 17 H -0.285 1.285 18 H -0.292 1.292 19 H -0.280 1.280 20 C -0.171 4.171 21 C -0.170 4.170 22 C 0.473 3.527 23 F -0.172 7.172 24 F -0.184 7.184 25 F -0.170 7.170 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.399 0.601 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.038 0.962 36 H 0.362 0.638 37 H 0.259 0.741 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 2.615 -10.523 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 H 0.156 0.844 4 C 0.301 3.699 5 O -0.387 6.387 6 N -0.371 5.371 7 C -0.006 4.006 8 C -0.123 4.123 9 C -0.129 4.129 10 C 0.062 3.938 11 N -0.397 5.397 12 C -0.372 4.372 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.581 5.581 16 Si 0.717 3.283 17 H -0.212 1.212 18 H -0.219 1.219 19 H -0.206 1.206 20 C -0.209 4.209 21 C -0.207 4.207 22 C 0.418 3.582 23 F -0.153 7.153 24 F -0.165 7.165 25 F -0.152 7.152 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.233 0.767 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.530 1.710 -10.633 23.184 hybrid contribution -0.379 1.738 0.171 1.787 sum -20.909 3.447 -10.463 23.634 Atomic orbital electron populations 1.21829 0.89333 1.04719 1.04705 1.22650 1.01217 1.03213 0.91664 0.84351 1.19658 0.80871 0.85174 0.84200 1.90859 1.35763 1.25796 1.86247 1.45832 1.59466 1.26097 1.05687 1.21606 1.02635 0.94630 0.81682 1.21185 0.99600 0.99306 0.92174 1.21654 0.95621 1.02551 0.93101 1.20225 0.83987 0.90723 0.98909 1.42671 1.03041 1.03610 1.90363 1.19064 0.80454 0.96504 1.41215 0.89270 1.24680 0.95038 0.97422 1.01920 1.69706 1.00088 1.31928 1.56365 0.86525 0.77367 0.86077 0.78294 1.21181 1.21884 1.20635 1.23028 0.97724 0.95860 1.04239 1.22964 1.03329 0.97951 0.96442 1.19745 0.76179 0.77867 0.84395 1.93204 1.88291 1.37177 1.96649 1.93177 1.88620 1.80885 1.53833 1.93249 1.28973 1.96313 1.96616 0.89997 0.90524 0.89767 0.76738 0.91159 0.88853 0.90942 0.91811 0.95722 0.94391 0.80488 0.93095 0.89147 0.88710 0.88420 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.85 37.15 0.33 -0.55 16 2 C -0.16 -1.50 2.71 -91.77 -0.25 -1.75 16 3 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.52 6.76 6.92 -10.98 -0.08 6.68 16 5 O -0.51 -9.26 14.85 5.56 0.08 -9.18 16 6 N -0.72 -8.05 5.39 -60.29 -0.33 -8.38 16 7 C 0.12 1.62 4.80 -4.04 -0.02 1.60 16 8 C -0.08 -1.04 5.37 -26.72 -0.14 -1.18 16 9 C -0.13 -1.81 1.83 -154.51 -0.28 -2.10 16 10 C 0.19 3.55 5.31 -4.04 -0.02 3.53 16 11 N -0.75 -17.35 5.28 -59.91 -0.32 -17.67 16 12 C -0.24 -6.86 10.47 -15.06 -0.16 -7.01 16 13 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 14 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 15 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 16 Si 0.89 22.04 27.90 -169.99 -4.74 17.29 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.28 -6.39 6.30 56.52 0.36 -6.04 16 20 C -0.17 -1.98 9.87 -26.74 -0.26 -2.24 16 21 C -0.17 -2.17 9.97 -26.73 -0.27 -2.43 16 22 C 0.47 5.57 2.42 37.16 0.09 5.66 16 23 F -0.17 -2.30 15.87 2.25 0.04 -2.26 16 24 F -0.18 -1.90 16.80 2.25 0.04 -1.86 16 25 F -0.17 -2.49 16.41 2.25 0.04 -2.45 16 26 H 0.08 0.38 7.80 -51.93 -0.41 -0.02 16 27 H 0.08 0.53 7.80 -51.92 -0.41 0.12 16 28 H 0.08 0.33 7.72 -51.93 -0.40 -0.07 16 29 H 0.40 3.01 8.11 -40.82 -0.33 2.68 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.71 6.84 -51.93 -0.36 1.35 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 34 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.04 0.75 6.69 -51.93 -0.35 0.40 16 36 H 0.36 8.16 5.46 -40.82 -0.22 7.94 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 38 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -34.71 350.77 -6.15 -40.85 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.86 Total: 6.92 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.16 Total: 0.25 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.13 Total: -54.85 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.74 Total: 17.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.71 -6.15 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166630107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.067 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds