Wall clock time and date at job start Tue Mar 31 2020 09:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99688 * 2 1 4 4 C 1.38751 * 120.05247 * 359.97438 * 3 2 1 5 5 C 1.38132 * 119.93990 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05414 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94053 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47090 * 103.25902 * 7 6 5 9 9 H 1.09000 * 109.47446 * 54.21434 * 8 7 6 10 10 C 1.52999 * 109.47500 * 174.22537 * 8 7 6 11 11 N 1.46903 * 109.46486 * 294.22112 * 8 7 6 12 12 C 1.46904 * 110.99806 * 152.85732 * 11 8 7 13 13 C 1.52995 * 109.47157 * 179.97438 * 12 11 8 14 14 C 1.50705 * 109.47392 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99279 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00292 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99822 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99927 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46899 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47114 * 120.00407 * 18 16 14 21 21 H 1.48505 * 109.46827 * 239.99973 * 18 16 14 22 22 C 1.38243 * 120.11499 * 0.28092 * 6 5 4 23 23 N 1.48007 * 119.97462 * 179.70017 * 22 6 5 24 24 O 1.21792 * 120.00012 * 173.89384 * 23 22 6 25 25 O 1.21803 * 119.99803 * 353.89738 * 23 22 6 26 26 C 1.38171 * 120.05138 * 359.44611 * 22 6 5 27 27 H 1.09002 * 109.47211 * 60.00185 * 1 2 3 28 28 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47522 * 300.00254 * 1 2 3 30 30 H 1.07997 * 120.03368 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97041 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47600 * 343.25588 * 7 6 5 33 33 H 1.09002 * 109.46879 * 223.25255 * 7 6 5 34 34 H 1.09001 * 109.46304 * 299.99560 * 10 8 7 35 35 H 1.09000 * 109.47227 * 59.98740 * 10 8 7 36 36 H 1.08994 * 109.47393 * 179.97438 * 10 8 7 37 37 H 1.00896 * 111.00188 * 28.90731 * 11 8 7 38 38 H 1.09004 * 109.47089 * 59.99750 * 12 11 8 39 39 H 1.08993 * 109.47255 * 299.99880 * 12 11 8 40 40 H 1.09004 * 109.47684 * 300.00553 * 13 12 11 41 41 H 1.09004 * 109.46985 * 60.00102 * 13 12 11 42 42 H 0.97004 * 120.00117 * 179.97438 * 17 16 14 43 43 H 1.08004 * 120.02369 * 180.27772 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6049 -0.0011 6 6 3.3017 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 6 4.5115 5.3232 1.4037 9 1 5.1432 4.5015 1.7413 10 6 5.3293 6.6159 1.3729 11 7 3.3796 5.4817 2.3265 12 6 3.7684 5.1371 3.7006 13 6 2.5664 5.3147 4.6304 14 6 2.9654 4.9618 6.0402 15 1 3.9754 4.6431 6.2517 16 6 2.0411 5.0457 7.0598 17 7 0.8110 5.4332 6.8020 18 14 2.5359 4.6089 8.8073 19 1 3.9647 4.2051 8.8309 20 1 2.3398 5.7891 9.6869 21 1 1.6961 3.4845 9.2931 22 6 4.0559 2.5173 -0.0053 23 7 5.5338 2.5970 -0.0114 24 8 6.1988 1.5823 0.0965 25 8 6.0849 3.6773 -0.1244 26 6 3.4310 1.2850 0.0009 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2127 2.3203 -0.0014 31 1 1.3337 4.5115 -0.0019 32 1 3.2740 5.7891 -0.2970 33 1 4.8179 5.0025 -0.7044 34 1 6.1692 6.4982 0.6882 35 1 4.6976 7.4375 1.0352 36 1 5.7034 6.8331 2.3733 37 1 2.5884 4.9324 2.0260 38 1 4.5776 5.7918 4.0243 39 1 4.1040 4.1007 3.7341 40 1 2.2310 6.3513 4.5968 41 1 1.7570 4.6603 4.3069 42 1 0.1606 5.4919 7.5192 43 1 4.0207 0.3801 0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170312749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:48 Heat of formation + Delta-G solvation = -21.291800 kcal Electronic energy + Delta-G solvation = -25864.814627 eV Core-core repulsion = 22106.627282 eV Total energy + Delta-G solvation = -3758.187345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36088 -40.61524 -38.59689 -36.93925 -36.36697 -33.63359 -32.21698 -32.15384 -30.70610 -28.40900 -28.03974 -26.65976 -25.81652 -24.07136 -22.94656 -22.12433 -20.54711 -20.36025 -19.44284 -18.71274 -17.58456 -17.35121 -16.78600 -16.30344 -16.20706 -16.00777 -15.45360 -14.82368 -14.44724 -14.40500 -14.16564 -13.45391 -13.28900 -13.02795 -12.82790 -12.56228 -12.30597 -12.16640 -11.79625 -11.67708 -11.54458 -11.39663 -11.36745 -11.13494 -11.02326 -10.90550 -10.73670 -10.58653 -10.48785 -9.96291 -9.87224 -9.38976 -9.14966 -8.69680 -8.37825 -7.84754 -6.02403 -4.04450 -0.28870 0.73774 1.23009 1.28792 2.76636 3.00701 3.29660 3.37112 3.42167 4.11513 4.27245 4.31593 4.42017 4.47916 4.61512 4.71460 4.76357 4.80030 5.07818 5.09242 5.18768 5.28887 5.33945 5.37636 5.60337 5.68297 5.70894 5.80374 5.91828 5.97626 6.15243 6.24436 6.31884 6.42484 6.46946 6.58463 6.76309 6.97631 7.46968 7.64353 7.69592 7.80612 7.93496 8.05456 8.41991 9.02713 9.59565 11.09100 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.004247 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.135757 B = 6591.969798 C = 7922.052275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.126 3.874 4 C -0.149 4.149 5 C -0.076 4.076 6 C -0.049 4.049 7 C -0.100 4.100 8 C 0.094 3.906 9 H 0.037 0.963 10 C -0.132 4.132 11 N -0.687 5.687 12 C 0.066 3.934 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.007 4.007 23 N 0.032 4.968 24 O -0.168 6.168 25 O -0.143 6.143 26 C -0.091 4.091 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.329 0.671 38 H 0.061 0.939 39 H 0.009 0.991 40 H 0.026 0.974 41 H 0.010 0.990 42 H 0.260 0.740 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -6.985 -19.494 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.080 3.920 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.051 4.051 7 C -0.137 4.137 8 C -0.016 4.016 9 H 0.055 0.945 10 C -0.190 4.190 11 N -0.319 5.319 12 C -0.062 4.062 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.090 4.090 23 N 0.551 4.449 24 O -0.381 6.381 25 O -0.360 6.360 26 C -0.111 4.111 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.044 0.956 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.193 -6.543 -19.313 20.427 hybrid contribution 0.236 -1.235 1.092 1.665 sum -0.957 -7.778 -18.221 19.835 Atomic orbital electron populations 1.23215 0.77260 1.04779 1.01920 1.86102 1.22169 1.25504 1.88419 1.18534 0.90964 0.85186 0.97349 1.21740 1.01499 0.91916 1.01662 1.21059 0.92355 0.98580 0.97468 1.19915 0.93797 0.94796 0.96554 1.21331 1.01480 0.91019 0.99889 1.21422 0.92678 0.97643 0.89896 0.94484 1.21700 0.98825 0.96598 1.01913 1.60772 1.06822 1.61316 1.03033 1.22193 1.00820 0.96520 0.86654 1.19055 0.91671 0.97782 0.92513 1.21224 0.96931 1.44962 0.92756 0.92733 1.24988 0.94951 0.95282 0.99068 1.69981 1.03271 1.47714 1.32418 0.86541 0.78692 0.78073 0.84756 1.19715 1.20889 1.21049 1.20516 0.79601 0.95477 1.13399 1.43436 1.03252 1.00437 0.97775 1.94542 1.64112 1.25932 1.53491 1.94487 1.73520 1.16023 1.51993 1.19985 0.92639 0.97378 1.01075 0.92243 0.87562 0.91792 0.83380 0.82718 0.89408 0.87253 0.92382 0.92233 0.92483 0.85261 0.92064 0.97235 0.95550 0.97163 0.93084 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.08 10.50 -19.45 -0.20 -3.28 16 3 C 0.13 1.37 6.69 -39.22 -0.26 1.10 16 4 C -0.15 -1.40 9.04 -39.43 -0.36 -1.76 16 5 C -0.08 -0.78 8.52 -39.60 -0.34 -1.11 16 6 C -0.05 -0.60 4.55 -104.60 -0.48 -1.07 16 7 C -0.10 -1.22 4.20 -27.88 -0.12 -1.34 16 8 C 0.09 1.43 2.01 -67.71 -0.14 1.30 16 9 H 0.04 0.65 6.25 -51.93 -0.32 0.32 16 10 C -0.13 -1.87 9.44 37.16 0.35 -1.52 16 11 N -0.69 -12.38 6.32 -106.72 -0.67 -13.06 16 12 C 0.07 1.46 5.42 -3.82 -0.02 1.44 16 13 C 0.03 0.72 5.23 -27.88 -0.15 0.57 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.01 -0.09 6.71 -79.98 -0.54 -0.63 16 23 N 0.03 0.49 4.31 33.95 0.15 0.63 16 24 O -0.17 -2.64 18.46 -29.46 -0.54 -3.19 16 25 O -0.14 -2.15 13.69 -29.46 -0.40 -2.56 16 26 C -0.09 -1.11 9.50 -39.43 -0.37 -1.49 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.15 0.97 6.30 -52.49 -0.33 0.64 16 31 H 0.16 1.27 8.01 -52.48 -0.42 0.85 16 32 H 0.09 0.93 7.97 -51.93 -0.41 0.52 16 33 H 0.11 1.30 5.92 -51.93 -0.31 0.99 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.88 7.60 -51.93 -0.39 0.48 16 37 H 0.33 5.64 6.51 -39.29 -0.26 5.38 16 38 H 0.06 1.36 7.59 -51.93 -0.39 0.97 16 39 H 0.01 0.21 8.05 -51.93 -0.42 -0.20 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.16 1.81 7.62 -52.48 -0.40 1.41 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -32.87 357.01 -8.53 -41.40 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.11 Total: 1.08 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.83 Total: -17.11 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.21 Total: -38.62 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.15 Total: -9.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.87 -8.53 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170312749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.107 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds