Wall clock time and date at job start Tue Mar 31 2020 09:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47544 * 2 1 4 4 C 1.53003 * 109.47240 * 120.00006 * 2 1 3 5 5 C 1.53005 * 109.47391 * 183.69969 * 4 2 1 6 6 C 1.50695 * 109.47278 * 175.93339 * 5 4 2 7 7 H 1.08008 * 119.99527 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99692 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99943 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46882 * 90.00326 * 10 8 6 12 12 H 1.48497 * 109.47191 * 209.99878 * 10 8 6 13 13 H 1.48499 * 109.47250 * 329.99994 * 10 8 6 14 14 N 1.46901 * 109.47293 * 239.99810 * 2 1 3 15 15 C 1.46906 * 110.99340 * 73.16706 * 14 2 1 16 16 C 1.53247 * 109.33665 * 172.74933 * 15 14 2 17 17 N 1.47085 * 108.52004 * 53.82663 * 16 15 14 18 18 C 1.34779 * 120.87363 * 128.83470 * 17 16 15 19 19 O 1.21287 * 119.99443 * 179.97438 * 18 17 16 20 20 C 1.50692 * 120.00243 * 359.97438 * 18 17 16 21 21 F 1.39903 * 109.47198 * 179.97438 * 20 18 17 22 22 F 1.39899 * 109.47553 * 299.99428 * 20 18 17 23 23 F 1.39900 * 109.47503 * 59.99865 * 20 18 17 24 24 C 1.47073 * 118.23882 * 308.81730 * 17 16 15 25 25 C 1.46900 * 110.99822 * 308.87143 * 14 2 1 26 26 H 1.08997 * 109.47544 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47240 * 59.99883 * 1 2 3 28 28 H 1.09009 * 109.47056 * 299.99559 * 1 2 3 29 29 H 1.08999 * 109.46935 * 303.70412 * 4 2 1 30 30 H 1.09001 * 109.46949 * 63.70215 * 4 2 1 31 31 H 1.08999 * 109.47024 * 295.93315 * 5 4 2 32 32 H 1.08994 * 109.46712 * 55.93474 * 5 4 2 33 33 H 0.97002 * 119.99432 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.49494 * 292.70644 * 15 14 2 35 35 H 1.08992 * 109.49320 * 52.79231 * 15 14 2 36 36 H 1.09001 * 109.62277 * 294.12223 * 16 15 14 37 37 H 1.08998 * 109.62934 * 173.53791 * 16 15 14 38 38 H 1.09001 * 109.62840 * 291.47130 * 24 17 16 39 39 H 1.09004 * 109.62539 * 170.89531 * 24 17 16 40 40 H 1.09000 * 109.49407 * 307.20326 * 25 14 2 41 41 H 1.08997 * 109.49765 * 67.26226 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5672 -0.6412 1.2967 6 6 4.0634 -1.2637 2.5762 7 1 3.3598 -1.6757 3.2846 8 6 5.4155 -1.3073 2.8426 9 7 6.2721 -0.8061 1.9798 10 14 6.0304 -2.0784 4.4290 11 1 6.2789 -3.5263 4.2118 12 1 7.2931 -1.4164 4.8442 13 1 5.0081 -1.9056 5.4922 14 7 2.0197 -0.6925 -1.1994 15 6 1.8206 0.1300 -2.4002 16 6 2.5034 -0.5435 -3.5955 17 7 2.0087 -1.9248 -3.6987 18 6 1.5318 -2.4033 -4.8650 19 8 1.1283 -3.5451 -4.9322 20 6 1.5000 -1.5198 -6.0853 21 9 0.9678 -2.2338 -7.1643 22 9 0.7030 -0.3989 -5.8290 23 9 2.7999 -1.1065 -6.3959 24 6 2.0485 -2.7700 -2.4957 25 6 1.3837 -2.0088 -1.3438 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 0.5138 0.8901 29 1 1.6235 -0.2472 2.1380 30 1 1.7318 -1.7663 1.2167 31 1 3.9858 -1.1779 0.4453 32 1 3.8776 0.4028 1.2564 33 1 7.2234 -0.8371 2.1671 34 1 0.7537 0.2303 -2.5998 35 1 2.2557 1.1167 -2.2414 36 1 3.5827 -0.5515 -3.4438 37 1 2.2631 0.0007 -4.5088 38 1 3.0842 -2.9920 -2.2384 39 1 1.5076 -3.6978 -2.6820 40 1 1.5019 -2.5733 -0.4188 41 1 0.3228 -1.8788 -1.5575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:27 Heat of formation + Delta-G solvation = -175.874475 kcal Electronic energy + Delta-G solvation = -26867.814511 eV Core-core repulsion = 22561.067218 eV Total energy + Delta-G solvation = -4306.747293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.67320 -48.15182 -48.11663 -40.54476 -38.75884 -36.00707 -33.35503 -31.73951 -31.52515 -29.39495 -28.32382 -26.35221 -25.14320 -23.97388 -22.46329 -21.39349 -20.44152 -19.54467 -19.07219 -18.82499 -18.19137 -16.69919 -16.18288 -15.85734 -15.72379 -15.23029 -14.96092 -14.87526 -14.78621 -14.61614 -14.50412 -14.43788 -14.21416 -14.20874 -13.59132 -13.40478 -13.32559 -12.79681 -12.53004 -12.22068 -12.11949 -11.74283 -11.68291 -11.34368 -11.18409 -10.94516 -10.82237 -10.56469 -10.49078 -10.21350 -9.70900 -9.30540 -9.20492 -8.95046 -8.30183 -7.99605 -5.94624 -3.96210 1.52137 1.62261 2.67999 3.21853 3.33287 3.40053 3.42703 3.66853 3.82013 3.94605 4.49070 4.60043 4.81631 4.90835 5.10037 5.20946 5.21897 5.35603 5.41266 5.48134 5.50332 5.57057 5.68723 5.77771 5.88536 5.98270 6.10503 6.16224 6.25137 6.52300 6.67433 6.73414 7.16538 7.19123 7.25923 7.34509 7.78200 7.98519 8.13447 8.50136 9.12525 9.67192 11.16161 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.003338 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.460790 B = 8385.618614 C = 8817.528777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.081 0.919 4 C -0.102 4.102 5 C 0.032 3.968 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.517 5.517 15 C 0.042 3.958 16 C 0.095 3.905 17 N -0.578 5.578 18 C 0.481 3.519 19 O -0.488 6.488 20 C 0.451 3.549 21 F -0.155 7.155 22 F -0.168 7.168 23 F -0.166 7.166 24 C 0.114 3.886 25 C 0.039 3.961 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.010 0.990 33 H 0.258 0.742 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.087 1.677 -14.854 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.099 0.901 4 C -0.140 4.140 5 C -0.005 4.005 6 C -0.560 4.560 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.241 5.241 15 C -0.087 4.087 16 C -0.027 4.027 17 N -0.311 5.311 18 C 0.260 3.740 19 O -0.362 6.362 20 C 0.393 3.607 21 F -0.136 7.136 22 F -0.149 7.149 23 F -0.147 7.147 24 C -0.007 4.007 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.603 1.033 -14.862 18.286 hybrid contribution -0.394 0.028 0.515 0.649 sum -10.997 1.061 -14.346 18.107 Atomic orbital electron populations 1.22510 0.98566 1.01789 1.01482 1.21913 0.91242 0.98601 0.90734 0.90127 1.21725 1.00931 0.98185 0.93110 1.18973 0.87854 0.96927 0.96766 1.21335 0.91689 1.38175 1.04779 0.93127 1.24980 0.97127 0.95669 0.96493 1.69970 1.01938 1.45996 1.35392 0.86699 0.78277 0.79421 0.84190 1.20777 1.21336 1.20034 1.62093 1.57738 1.02445 1.01861 1.22431 0.98569 0.97685 0.90010 1.22327 1.01162 0.79742 0.99470 1.48251 1.58823 1.14969 1.09043 1.20227 0.81458 0.88080 0.84233 1.90854 1.46068 1.16612 1.82618 1.20304 0.74778 0.79670 0.85973 1.93258 1.86076 1.77843 1.56435 1.93236 1.74150 1.53595 1.93921 1.93269 1.36868 1.90678 1.93912 1.22085 1.03678 0.93479 0.81415 1.22536 0.95694 0.91717 0.98964 0.92541 0.93561 0.92045 0.93047 0.93444 0.95207 0.97189 0.93195 0.94401 0.88804 0.88401 0.89586 0.88765 0.88368 0.87956 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.40 37.15 0.31 -1.96 16 2 C 0.08 1.23 2.31 -67.71 -0.16 1.08 16 3 H 0.08 1.24 7.91 -51.93 -0.41 0.82 16 4 C -0.10 -1.91 4.58 -26.73 -0.12 -2.03 16 5 C 0.03 0.78 4.80 -27.88 -0.13 0.64 16 6 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 7 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 10 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 N -0.52 -7.28 4.02 -226.34 -0.91 -8.19 16 15 C 0.04 0.48 5.31 -3.69 -0.02 0.46 16 16 C 0.10 1.01 5.98 -3.60 -0.02 0.99 16 17 N -0.58 -6.89 3.01 -172.46 -0.52 -7.41 16 18 C 0.48 6.06 7.28 -10.99 -0.08 5.98 16 19 O -0.49 -7.42 16.07 5.55 0.09 -7.33 16 20 C 0.45 4.95 2.79 36.00 0.10 5.05 16 21 F -0.15 -1.82 16.92 2.25 0.04 -1.79 16 22 F -0.17 -1.70 15.63 2.25 0.04 -1.66 16 23 F -0.17 -1.73 16.02 2.25 0.04 -1.69 16 24 C 0.11 1.41 6.60 -3.60 -0.02 1.39 16 25 C 0.04 0.51 4.57 -3.70 -0.02 0.49 16 26 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 27 H 0.05 0.52 6.97 -51.93 -0.36 0.16 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 31 H 0.03 0.77 7.83 -51.93 -0.41 0.37 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.04 0.41 7.06 -51.93 -0.37 0.05 16 35 H 0.09 1.00 7.95 -51.93 -0.41 0.59 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.09 0.77 4.74 -51.93 -0.25 0.53 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.18 7.06 -51.93 -0.37 0.81 16 40 H 0.10 1.41 6.25 -51.93 -0.32 1.09 16 41 H 0.04 0.47 6.67 -51.93 -0.35 0.12 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -30.23 335.04 -6.60 -36.83 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.56 Total: -3.49 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.57 Total: -1.04 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.69 Total: -41.25 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.09 Total: -7.33 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.11 Total: -5.14 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.23 -6.60 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.040 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds