Wall clock time and date at job start Tue Mar 31 2020 10:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.46831 * 2 1 4 4 C 1.34789 * 116.99701 * 180.02562 * 3 2 1 5 5 O 1.21545 * 120.00328 * 359.97438 * 4 3 2 6 6 C 1.47113 * 119.99847 * 179.72633 * 4 3 2 7 7 C 1.37838 * 127.02494 * 89.95492 * 6 4 3 8 8 C 1.50698 * 125.89775 * 359.96686 * 7 6 4 9 9 N 1.34625 * 108.20528 * 179.83733 * 7 6 4 10 10 H 0.97006 * 124.80982 * 180.17553 * 9 7 6 11 11 C 1.36427 * 110.38248 * 0.44651 * 9 7 6 12 12 C 1.34432 * 109.08275 * 359.72453 * 11 9 7 13 13 C 1.50702 * 126.81161 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47127 * 264.97583 * 13 12 11 15 15 C 1.50704 * 109.47303 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99772 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00228 * 180.02562 * 15 14 13 18 18 C 1.46499 * 119.99900 * 359.97438 * 17 15 14 19 19 C 1.37091 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.07996 * 120.00754 * 24.39240 * 19 17 15 21 21 C 1.38951 * 119.99871 * 204.39687 * 19 17 15 22 22 N 1.31409 * 120.00240 * 12.63286 * 21 19 17 23 23 Si 1.86803 * 119.99928 * 192.64117 * 21 19 17 24 24 H 1.48492 * 109.47374 * 89.99523 * 23 21 19 25 25 H 1.48506 * 109.46902 * 209.99702 * 23 21 19 26 26 H 1.48498 * 109.46938 * 329.99051 * 23 21 19 27 27 H 1.08994 * 109.47137 * 60.00691 * 1 2 3 28 28 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47650 * 300.00069 * 1 2 3 30 30 H 1.08996 * 109.47650 * 239.99931 * 2 1 3 31 31 H 1.09002 * 109.46995 * 119.99956 * 2 1 3 32 32 H 1.09005 * 109.47137 * 89.99944 * 8 7 6 33 33 H 1.09003 * 109.47347 * 209.99894 * 8 7 6 34 34 H 1.09002 * 109.47543 * 330.00242 * 8 7 6 35 35 H 1.08000 * 125.45810 * 179.73053 * 11 9 7 36 36 H 1.08994 * 109.47230 * 24.97628 * 13 12 11 37 37 H 1.09001 * 109.46910 * 144.97552 * 13 12 11 38 38 H 1.09003 * 109.47212 * 299.99884 * 14 13 12 39 39 H 1.09001 * 109.47250 * 60.00177 * 14 13 12 40 40 H 1.09003 * 109.47213 * 85.86020 * 18 17 15 41 41 H 1.09005 * 109.47392 * 205.86384 * 18 17 15 42 42 H 1.09003 * 109.47335 * 325.86241 * 18 17 15 43 43 H 0.97003 * 120.00355 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0906 0.5817 -0.0005 6 6 3.9124 2.9050 -0.0067 7 6 4.2286 3.6774 1.0903 8 6 4.0575 3.2758 2.5327 9 7 4.7194 4.8514 0.6508 10 1 5.0204 5.5748 1.2228 11 6 4.7280 4.8820 -0.7131 12 6 4.2452 3.7183 -1.1819 13 6 4.0793 3.3263 -2.6276 14 6 2.6492 3.6311 -3.0777 15 6 2.4831 3.2386 -4.5232 16 8 3.4168 2.7624 -5.1334 17 7 1.2972 3.4176 -5.1382 18 6 0.1695 3.9932 -4.4012 19 6 1.1463 3.0610 -6.4533 20 1 1.7883 2.3080 -6.8858 21 6 0.1673 3.6686 -7.2299 22 7 -0.4439 4.7463 -6.7919 23 14 -0.2803 2.9533 -8.8965 24 1 -1.3754 1.9639 -8.7326 25 1 -0.7293 4.0439 -9.7988 26 1 0.9083 2.2836 -9.4829 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.9657 2.7857 2.8836 33 1 3.8667 4.1628 3.1367 34 1 3.2164 2.5882 2.6211 35 1 5.0681 5.7087 -1.3191 36 1 4.7813 3.8919 -3.2402 37 1 4.2762 2.2601 -2.7399 38 1 1.9471 3.0654 -2.4651 39 1 2.4523 4.6973 -2.9654 40 1 0.2235 5.0810 -4.4460 41 1 -0.7662 3.6572 -4.8481 42 1 0.2120 3.6699 -3.3611 43 1 -1.1277 5.1703 -7.3339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177832533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:45 Heat of formation + Delta-G solvation = -83.045979 kcal Electronic energy + Delta-G solvation = -25714.038853 eV Core-core repulsion = 21953.173645 eV Total energy + Delta-G solvation = -3760.865208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31646 -39.79381 -38.34559 -36.33507 -34.74129 -33.58998 -32.02450 -31.55965 -31.32893 -29.80306 -26.92421 -26.10539 -24.76638 -24.07259 -23.06998 -22.30130 -19.74909 -19.29718 -18.52700 -17.61399 -17.19114 -16.74763 -16.27753 -15.76956 -15.73569 -14.85513 -14.73493 -14.43717 -14.06189 -13.96708 -13.58046 -13.22464 -13.15334 -12.88829 -12.82365 -12.76328 -12.52535 -12.11970 -11.90211 -11.68253 -11.58045 -11.50529 -11.24889 -11.12704 -11.07086 -10.77790 -10.54251 -10.44209 -10.31513 -10.28683 -10.10103 -8.92778 -8.66490 -8.28064 -8.06201 -7.55351 -6.23715 -3.79474 1.93009 2.28887 2.50957 2.90124 3.21797 3.29432 3.29709 3.35920 4.03957 4.22139 4.57486 4.81024 4.93650 4.95385 5.00112 5.06338 5.16673 5.21284 5.24252 5.27538 5.42878 5.58026 5.60918 5.71416 5.79225 5.84451 5.86101 5.98677 6.05419 6.13097 6.28209 6.52064 6.55213 6.60810 6.68546 6.84081 6.95031 6.97724 7.28371 7.40295 7.64848 7.92663 8.25129 8.59634 9.29307 9.53976 10.11600 10.81407 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.003745 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.557851 B = 7474.379400 C = 8388.882704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.350 6.350 4 C 0.552 3.448 5 O -0.506 6.506 6 C -0.206 4.206 7 C 0.075 3.925 8 C -0.091 4.091 9 N -0.547 5.547 10 H 0.416 0.584 11 C -0.013 4.013 12 C -0.104 4.104 13 C -0.034 4.034 14 C -0.121 4.121 15 C 0.448 3.552 16 O -0.591 6.591 17 N -0.450 5.450 18 C 0.114 3.886 19 C -0.304 4.304 20 H 0.096 0.904 21 C 0.029 3.971 22 N -0.885 5.885 23 Si 0.924 3.076 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.269 1.269 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.174 0.826 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 0.285 20.191 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.266 6.266 4 C 0.395 3.605 5 O -0.393 6.393 6 C -0.215 4.215 7 C -0.042 4.042 8 C -0.148 4.148 9 N -0.141 5.141 10 H 0.253 0.747 11 C -0.141 4.141 12 C -0.109 4.109 13 C -0.072 4.072 14 C -0.161 4.161 15 C 0.236 3.764 16 O -0.476 6.476 17 N -0.170 5.170 18 C -0.030 4.030 19 C -0.432 4.432 20 H 0.114 0.886 21 C -0.173 4.173 22 N -0.524 5.524 23 Si 0.751 3.249 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.191 0.809 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.593 -0.024 19.856 20.179 hybrid contribution -0.339 0.094 -0.598 0.694 sum 3.253 0.071 19.258 19.531 Atomic orbital electron populations 1.21804 0.92564 1.02858 1.03743 1.23038 0.95486 0.80416 1.02479 1.86698 1.24175 1.31963 1.83792 1.20281 0.80244 0.88813 0.71156 1.90833 1.60676 1.42581 1.45212 1.19319 1.14455 0.93862 0.93859 1.20203 1.02478 0.86650 0.94860 1.20427 1.03386 1.02235 0.88792 1.41295 1.51158 1.14385 1.07309 0.74728 1.21533 1.09741 1.00616 0.82191 1.20575 1.03482 0.92731 0.94146 1.19721 0.96777 1.02407 0.88289 1.21490 0.97081 1.02174 0.95392 1.20181 0.82967 0.84503 0.88711 1.90502 1.39801 1.49608 1.67725 1.43581 1.08165 1.54608 1.10596 1.21443 0.91271 0.98277 0.92028 1.19653 1.17831 1.19997 0.85745 0.88580 1.25319 0.97646 0.94934 0.99434 1.69999 1.26098 1.17596 1.38755 0.85960 0.78921 0.78408 0.81622 1.20461 1.21033 1.19402 0.90984 0.90364 0.91673 0.91027 0.91538 0.90377 0.90926 0.90111 0.80917 0.90273 0.90919 0.90527 0.90372 0.93195 0.90945 0.95513 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.16 0.38 -1.13 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.35 -5.31 10.23 -40.73 -0.42 -5.72 16 4 C 0.55 9.11 7.40 34.33 0.25 9.37 16 5 O -0.51 -9.45 16.90 -19.30 -0.33 -9.77 16 6 C -0.21 -3.12 6.21 -103.01 -0.64 -3.76 16 7 C 0.07 0.85 7.22 -81.51 -0.59 0.26 16 8 C -0.09 -0.72 10.25 36.00 0.37 -0.35 16 9 N -0.55 -5.10 5.89 -8.89 -0.05 -5.15 16 10 H 0.42 2.23 8.96 -40.82 -0.37 1.86 16 11 C -0.01 -0.16 11.80 -16.85 -0.20 -0.36 16 12 C -0.10 -1.58 5.61 -102.53 -0.58 -2.16 16 13 C -0.03 -0.61 4.97 -27.88 -0.14 -0.75 16 14 C -0.12 -2.37 4.29 -27.88 -0.12 -2.49 16 15 C 0.45 11.38 7.63 -10.98 -0.08 11.30 16 16 O -0.59 -16.98 15.69 5.55 0.09 -16.89 16 17 N -0.45 -11.98 3.01 -122.19 -0.37 -12.35 16 18 C 0.11 2.63 8.44 59.85 0.51 3.13 16 19 C -0.30 -8.76 9.24 -14.94 -0.14 -8.90 16 20 H 0.10 2.90 7.45 -52.49 -0.39 2.51 16 21 C 0.03 0.79 5.04 -17.47 -0.09 0.71 16 22 N -0.88 -24.14 10.83 55.50 0.60 -23.54 16 23 Si 0.92 21.26 29.57 -169.99 -5.03 16.23 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 35 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 38 H 0.08 1.45 7.41 -51.93 -0.38 1.07 16 39 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.05 1.17 7.83 -51.93 -0.41 0.77 16 41 H 0.07 1.76 6.80 -51.93 -0.35 1.40 16 42 H 0.03 0.52 6.61 -51.93 -0.34 0.18 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -35.88 368.72 -7.21 -43.09 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.44 Total: 2.70 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.83 Total: 5.85 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.18 Total: -41.04 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.66 Total: -32.39 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.88 -7.21 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177832533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.953 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds