Wall clock time and date at job start Tue Mar 31 2020 09:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47058 * 2 1 4 4 C 1.53008 * 109.46900 * 119.99720 * 2 1 3 5 5 C 1.52994 * 109.47143 * 292.70117 * 4 2 1 6 6 F 1.39897 * 109.47054 * 66.37499 * 5 4 2 7 7 F 1.39901 * 109.46766 * 186.36997 * 5 4 2 8 8 F 1.39897 * 109.47363 * 306.37437 * 5 4 2 9 9 C 1.50695 * 109.47102 * 239.99689 * 2 1 3 10 10 O 1.21280 * 120.00482 * 262.79103 * 9 2 1 11 11 N 1.34780 * 119.99957 * 82.79268 * 9 2 1 12 12 C 1.48209 * 119.96639 * 355.17349 * 11 9 2 13 13 C 1.47148 * 110.19939 * 102.58572 * 12 11 9 14 14 C 1.53507 * 112.03148 * 58.35952 * 13 12 11 15 15 N 1.43460 * 107.88891 * 281.58380 * 14 13 12 16 16 C 1.36935 * 118.94180 * 273.55881 * 15 14 13 17 17 H 1.08001 * 119.99662 * 134.85626 * 16 15 14 18 18 C 1.38809 * 120.00256 * 314.85355 * 16 15 14 19 19 N 1.31621 * 120.00031 * 169.69151 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 349.69137 * 18 16 15 21 21 H 1.48503 * 109.47198 * 93.09115 * 20 18 16 22 22 H 1.48491 * 109.47046 * 213.09014 * 20 18 16 23 23 H 1.48502 * 109.47008 * 333.09648 * 20 18 16 24 24 C 1.48860 * 122.11618 * 93.58601 * 15 14 13 25 25 C 1.43619 * 119.97114 * 175.19447 * 11 9 2 26 26 H 1.08999 * 109.46911 * 185.51452 * 1 2 3 27 27 H 1.09002 * 109.47025 * 305.51689 * 1 2 3 28 28 H 1.09001 * 109.47186 * 65.51675 * 1 2 3 29 29 H 1.08995 * 109.47014 * 52.70745 * 4 2 1 30 30 H 1.09002 * 109.46427 * 172.70064 * 4 2 1 31 31 H 1.09003 * 109.32567 * 222.76021 * 12 11 9 32 32 H 1.09000 * 109.32714 * 342.40735 * 12 11 9 33 33 H 1.09002 * 109.00400 * 178.81811 * 13 12 11 34 34 H 1.09002 * 109.00332 * 297.59452 * 13 12 11 35 35 H 1.09000 * 109.83808 * 161.96945 * 14 13 12 36 36 H 1.08995 * 109.79537 * 41.18403 * 14 13 12 37 37 H 0.96997 * 119.99666 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.47852 * 200.64066 * 24 15 14 39 39 H 1.08996 * 109.48879 * 80.61046 * 24 15 14 40 40 H 1.09003 * 108.87037 * 31.44311 * 25 11 9 41 41 H 1.09002 * 108.87618 * 149.87887 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6851 0.0981 2.4917 6 9 0.2957 0.1225 2.6530 7 9 2.2752 -0.4844 3.6186 8 9 2.1599 1.4052 2.3397 9 6 2.0323 -0.7105 -1.2304 10 8 2.3587 -1.8767 -1.1665 11 7 2.1189 -0.0497 -2.4019 12 6 1.6204 1.3422 -2.5054 13 6 2.7469 2.2885 -2.4804 14 6 3.7442 2.0268 -3.6177 15 7 4.5594 0.9083 -3.2403 16 6 5.6811 1.1301 -2.4869 17 1 5.8957 0.4971 -1.6386 18 6 6.5425 2.1685 -2.8135 19 7 7.5039 2.5120 -1.9828 20 14 6.3371 3.0784 -4.4320 21 1 5.4802 4.2731 -4.2229 22 1 7.6684 3.5054 -4.9321 23 1 5.6990 2.1799 -5.4274 24 6 4.2254 -0.4856 -3.6419 25 6 2.6937 -0.6952 -3.5489 26 1 -0.3633 -1.0229 0.0988 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 1.5740 -1.7042 1.3170 30 1 3.1221 -0.8357 1.1864 31 1 1.0710 1.4601 -3.4395 32 1 0.9556 1.5505 -1.6672 33 1 2.3605 3.3030 -2.5786 34 1 3.2649 2.1985 -1.5255 35 1 4.3713 2.9054 -3.7692 36 1 3.2045 1.7965 -4.5362 37 1 8.1056 3.2378 -2.2110 38 1 4.7291 -1.1863 -2.9760 39 1 4.5543 -0.6575 -4.6667 40 1 2.4868 -1.7640 -3.4926 41 1 2.2277 -0.2949 -4.4493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197014341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:12 Heat of formation + Delta-G solvation = -160.886261 kcal Electronic energy + Delta-G solvation = -27828.880833 eV Core-core repulsion = 23522.783477 eV Total energy + Delta-G solvation = -4306.097356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.14677 -47.65667 -47.56992 -40.25361 -37.45223 -35.06441 -34.52724 -32.26740 -31.62179 -29.35128 -27.89862 -25.79902 -25.02088 -23.71380 -22.76292 -21.35948 -20.09676 -18.97655 -18.57922 -18.13012 -17.66548 -16.69702 -16.44391 -16.02314 -15.51609 -15.13208 -14.85696 -14.50873 -14.25435 -14.19517 -13.98030 -13.84879 -13.71300 -13.65054 -13.37485 -13.33416 -12.95809 -12.71367 -12.42589 -12.18161 -12.05198 -11.77935 -11.70487 -11.41108 -11.36214 -11.09469 -10.99064 -10.66137 -10.51676 -10.23947 -9.76852 -9.65826 -9.42832 -8.59032 -8.30295 -6.71557 -5.98002 -3.54472 2.67199 2.85085 3.24815 3.27991 3.41028 3.45031 3.81318 3.96825 4.06315 4.46739 4.52674 4.72274 4.81531 4.99321 5.05422 5.15937 5.29427 5.38310 5.44788 5.50817 5.55190 5.63138 5.70322 5.77988 5.81088 5.97941 6.03975 6.05440 6.21146 6.22975 6.51553 6.57955 6.68864 6.84976 7.04772 7.63814 8.12888 8.39219 8.43170 9.02100 9.68168 10.08259 11.16331 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.005062 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.700339 B = 5530.245642 C = 6214.834803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 H 0.109 0.891 4 C -0.147 4.147 5 C 0.454 3.546 6 F -0.184 7.184 7 F -0.184 7.184 8 F -0.179 7.179 9 C 0.531 3.469 10 O -0.547 6.547 11 N -0.583 5.583 12 C 0.118 3.882 13 C -0.172 4.172 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.269 4.269 17 H 0.073 0.927 18 C 0.035 3.965 19 N -0.908 5.908 20 Si 0.897 3.103 21 H -0.287 1.287 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.130 3.870 25 C 0.100 3.900 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 -2.973 2.918 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 H 0.127 0.873 4 C -0.186 4.186 5 C 0.400 3.600 6 F -0.165 7.165 7 F -0.166 7.166 8 F -0.161 7.161 9 C 0.319 3.681 10 O -0.425 6.425 11 N -0.313 5.313 12 C -0.004 4.004 13 C -0.213 4.213 14 C 0.026 3.974 15 N -0.329 5.329 16 C -0.398 4.398 17 H 0.091 0.909 18 C -0.165 4.165 19 N -0.549 5.549 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.004 3.996 25 C -0.025 4.025 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.254 -3.482 2.970 16.886 hybrid contribution 0.116 0.994 -0.650 1.194 sum -16.139 -2.488 2.320 16.493 Atomic orbital electron populations 1.22105 0.92046 1.03625 1.03625 1.21272 0.98241 1.01760 0.92411 0.87278 1.22698 1.06647 0.99927 0.89308 1.20584 0.74206 0.79209 0.86039 1.93122 1.30802 1.96528 1.96092 1.93188 1.83976 1.84126 1.55277 1.93210 1.88141 1.39081 1.95657 1.20001 0.77547 0.86548 0.84047 1.90666 1.50351 1.16554 1.84900 1.47311 1.59372 1.14316 1.10331 1.20921 0.96469 0.80967 1.02074 1.21766 0.97764 0.97440 1.04327 1.20579 0.91741 0.91467 0.93594 1.43860 1.26715 1.00388 1.61920 1.18771 0.98003 1.16126 1.06942 0.90900 1.25636 0.94995 0.98880 0.97000 1.69776 1.19257 1.29917 1.35944 0.86627 0.75539 0.79240 0.85698 1.21471 1.23238 1.19639 1.22136 0.91837 0.87589 0.98017 1.21652 0.95793 0.97999 0.87086 0.91495 0.90286 0.91439 0.86488 0.86432 0.91370 0.90433 0.92165 0.90294 0.93543 0.94448 0.92703 0.91933 0.94924 0.90410 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.13 37.16 0.30 -1.26 16 2 C -0.12 -1.47 1.76 -91.77 -0.16 -1.64 16 3 H 0.11 1.44 6.20 -51.93 -0.32 1.12 16 4 C -0.15 -1.83 4.21 -26.73 -0.11 -1.94 16 5 C 0.45 5.51 3.13 37.15 0.12 5.63 16 6 F -0.18 -2.07 14.42 2.25 0.03 -2.04 16 7 F -0.18 -2.37 17.32 2.25 0.04 -2.33 16 8 F -0.18 -2.45 16.42 2.25 0.04 -2.41 16 9 C 0.53 8.48 6.79 -10.99 -0.07 8.41 16 10 O -0.55 -10.28 15.72 5.56 0.09 -10.19 16 11 N -0.58 -9.01 2.45 -176.65 -0.43 -9.44 16 12 C 0.12 1.55 5.13 -5.91 -0.03 1.52 16 13 C -0.17 -2.84 5.61 -29.28 -0.16 -3.01 16 14 C 0.15 3.05 4.38 -5.39 -0.02 3.03 16 15 N -0.61 -13.68 2.06 -172.18 -0.35 -14.03 16 16 C -0.27 -7.36 9.58 -15.06 -0.14 -7.51 16 17 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 18 C 0.04 1.00 5.43 -17.43 -0.09 0.91 16 19 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 20 Si 0.90 22.05 24.72 -169.99 -4.20 17.85 16 21 H -0.29 -6.79 6.81 56.52 0.38 -6.40 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.27 -6.48 6.99 56.52 0.40 -6.09 16 24 C 0.13 2.55 6.85 -1.75 -0.01 2.53 16 25 C 0.10 1.58 5.29 -4.58 -0.02 1.56 16 26 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 27 H 0.08 0.73 5.91 -51.93 -0.31 0.42 16 28 H 0.07 0.61 6.66 -51.93 -0.35 0.26 16 29 H 0.12 1.33 8.09 -51.93 -0.42 0.91 16 30 H 0.12 1.62 8.13 -51.93 -0.42 1.20 16 31 H 0.07 0.76 8.06 -51.93 -0.42 0.35 16 32 H 0.08 0.84 4.66 -51.93 -0.24 0.60 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.54 7.76 -51.93 -0.40 1.14 16 35 H 0.05 1.04 3.03 -51.93 -0.16 0.88 16 36 H 0.04 0.66 7.59 -51.93 -0.39 0.27 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.06 1.34 7.97 -51.93 -0.41 0.92 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.22 7.31 -51.93 -0.38 0.84 16 41 H 0.06 0.88 7.73 -51.93 -0.40 0.48 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -31.65 324.16 -5.03 -36.69 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.48 Total: -0.47 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.42 Total: 8.24 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.01 Total: -50.21 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.11 Total: -6.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.20 Total: 17.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.65 -5.03 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197014341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.200 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds