Wall clock time and date at job start Tue Mar 31 2020 09:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 C 1.53004 * 109.47330 * 239.99075 * 2 1 3 5 5 C 1.52996 * 109.46610 * 64.33592 * 4 2 1 6 6 F 1.39901 * 109.47617 * 56.58938 * 5 4 2 7 7 F 1.39901 * 109.46946 * 176.58988 * 5 4 2 8 8 F 1.39905 * 109.47254 * 296.58638 * 5 4 2 9 9 C 1.50710 * 109.46747 * 119.99707 * 2 1 3 10 10 O 1.21279 * 119.99885 * 102.89807 * 9 2 1 11 11 N 1.34773 * 119.99547 * 282.89107 * 9 2 1 12 12 C 1.46924 * 120.63423 * 5.64645 * 11 9 2 13 13 C 1.52763 * 109.00862 * 233.58205 * 12 11 9 14 14 C 1.53041 * 109.37954 * 305.58249 * 13 12 11 15 15 N 1.46507 * 109.44954 * 181.25223 * 14 13 12 16 16 C 1.36935 * 119.99631 * 84.94027 * 15 14 13 17 17 H 1.07996 * 120.00545 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99604 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00138 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99763 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47148 * 89.99964 * 20 18 16 22 22 H 1.48505 * 109.47236 * 210.00051 * 20 18 16 23 23 H 1.48507 * 109.47204 * 329.99807 * 20 18 16 24 24 C 1.53045 * 109.53963 * 61.24128 * 14 13 12 25 25 C 1.46925 * 120.62854 * 185.91672 * 11 9 2 26 26 H 1.09007 * 109.47286 * 172.89862 * 1 2 3 27 27 H 1.08991 * 109.47475 * 292.89982 * 1 2 3 28 28 H 1.09005 * 109.46686 * 52.90630 * 1 2 3 29 29 H 1.08997 * 109.46782 * 184.32976 * 4 2 1 30 30 H 1.08993 * 109.47307 * 304.33600 * 4 2 1 31 31 H 1.09003 * 109.58418 * 353.41183 * 12 11 9 32 32 H 1.08997 * 109.59606 * 113.83562 * 12 11 9 33 33 H 1.09003 * 109.56615 * 185.55114 * 13 12 11 34 34 H 1.08999 * 109.36410 * 65.49160 * 13 12 11 35 35 H 1.08998 * 109.46179 * 301.22217 * 14 13 12 36 36 H 0.97000 * 120.00034 * 264.93946 * 15 14 13 37 37 H 0.96997 * 119.99568 * 179.97438 * 19 18 16 38 38 H 1.08993 * 109.49798 * 178.68020 * 24 14 13 39 39 H 1.08999 * 109.49374 * 58.58442 * 24 14 13 40 40 H 1.09001 * 109.58876 * 246.16069 * 25 11 9 41 41 H 1.08998 * 109.59003 * 6.44659 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2491 5 6 1.6210 0.0599 -2.4960 6 9 2.1017 1.3708 -2.4085 7 9 2.1529 -0.5569 -3.6335 8 9 0.2250 0.0802 -2.5864 9 6 2.0322 -0.7104 1.2306 10 8 2.4553 -1.8438 1.1462 11 7 2.0112 -0.0860 2.4248 12 6 1.3899 1.2378 2.5666 13 6 2.3967 2.1944 3.2029 14 6 2.9069 1.5954 4.5155 15 7 3.8501 2.5251 5.1420 16 6 3.3861 3.5395 5.9361 17 1 2.3249 3.6541 6.1010 18 6 4.2797 4.4208 6.5293 19 7 5.5729 4.2815 6.3279 20 14 3.6468 5.8042 7.6132 21 1 3.5630 5.3329 9.0189 22 1 4.5756 6.9602 7.5332 23 1 2.2986 6.2195 7.1491 24 6 3.6126 0.2673 4.2319 25 6 2.6146 -0.7136 3.6083 26 1 -0.3634 -1.0198 -0.1271 27 1 -0.3634 0.3998 0.9466 28 1 -0.3633 0.6199 -0.8198 29 1 3.1272 -0.7891 -1.2111 30 1 1.6147 -1.7242 -1.2887 31 1 1.1015 1.6131 1.5847 32 1 0.5090 1.1618 3.2041 33 1 1.9148 3.1515 3.4029 34 1 3.2341 2.3436 2.5213 35 1 2.0660 1.4235 5.1873 36 1 4.8032 2.4220 4.9942 37 1 6.1973 4.8976 6.7421 38 1 3.9961 -0.1472 5.1641 39 1 4.4385 0.4346 3.5405 40 1 1.8357 -0.9521 4.3326 41 1 3.1319 -1.6268 3.3141 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201767979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:29 Heat of formation + Delta-G solvation = -188.267090 kcal Electronic energy + Delta-G solvation = -26443.713680 eV Core-core repulsion = 22136.429003 eV Total energy + Delta-G solvation = -4307.284678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.40001 -47.90195 -47.83362 -40.44148 -37.64333 -35.27632 -34.54931 -32.10275 -30.97624 -29.56750 -29.00798 -25.66628 -24.54145 -23.23351 -23.03024 -21.91041 -20.17966 -19.22668 -18.83513 -18.45018 -17.90119 -17.11264 -16.64280 -15.90293 -15.56176 -15.00851 -14.87453 -14.73721 -14.42902 -14.22497 -14.13215 -13.95579 -13.92857 -13.84170 -13.64050 -13.42475 -13.38629 -12.85850 -12.38273 -12.33141 -12.02467 -11.86020 -11.78272 -11.54479 -11.51999 -11.00382 -10.91907 -10.86266 -10.54450 -10.27396 -9.89498 -9.78392 -9.69681 -8.95972 -8.60384 -7.03285 -5.82321 -3.11905 2.41613 2.51838 2.95439 3.39348 3.44504 3.46397 3.55584 3.70430 3.79486 4.28104 4.48336 4.53279 4.54748 4.80816 5.04279 5.16250 5.24195 5.26748 5.27065 5.32552 5.42230 5.47992 5.55761 5.57845 5.65565 5.85485 5.87633 5.93143 6.15770 6.29603 6.31915 6.44071 6.53307 6.81897 6.96990 7.38480 7.63663 8.06590 8.35800 9.47165 10.04124 10.38659 11.40154 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.003049 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.900553 B = 9179.926504 C = 9677.988221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.148 4.148 5 C 0.453 3.547 6 F -0.182 7.182 7 F -0.184 7.184 8 F -0.180 7.180 9 C 0.526 3.474 10 O -0.548 6.548 11 N -0.601 5.601 12 C 0.103 3.897 13 C -0.153 4.153 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.139 4.139 25 C 0.116 3.884 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 -10.061 -15.837 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.138 4.138 3 H 0.128 0.872 4 C -0.186 4.186 5 C 0.399 3.601 6 F -0.163 7.163 7 F -0.165 7.165 8 F -0.162 7.162 9 C 0.313 3.687 10 O -0.427 6.427 11 N -0.333 5.333 12 C -0.021 4.021 13 C -0.194 4.194 14 C 0.068 3.932 15 N -0.364 5.364 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.178 4.178 25 C -0.006 4.006 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.359 -10.500 -15.767 21.590 hybrid contribution 0.028 1.123 0.380 1.186 sum -10.331 -9.377 -15.387 20.770 Atomic orbital electron populations 1.22198 0.91597 1.03934 1.04208 1.21283 0.98880 1.01439 0.92161 0.87238 1.22703 1.05810 1.00830 0.89262 1.20582 0.74858 0.78539 0.86086 1.93202 1.87956 1.38819 1.96350 1.93194 1.86220 1.82656 1.54474 1.93138 1.30120 1.96437 1.96480 1.20132 0.78224 0.86204 0.84146 1.90684 1.48021 1.18115 1.85830 1.48120 1.56938 1.19600 1.08667 1.21918 0.96503 0.82093 1.01539 1.22628 0.98337 0.98713 0.99760 1.20163 0.93000 0.88328 0.91659 1.42434 1.04998 1.32330 1.56673 1.19224 0.92228 1.04714 1.21121 0.91154 1.24754 0.95307 0.99701 1.01078 1.69660 1.00510 1.39551 1.48254 0.86208 0.77621 0.81865 0.80573 1.21707 1.21775 1.20738 1.22215 0.98212 0.96421 1.00970 1.21645 0.96397 0.96662 0.85911 0.91396 0.91080 0.89911 0.86673 0.86248 0.90151 0.91182 0.90459 0.92132 0.93380 0.78247 0.93452 0.90441 0.91824 0.91469 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 7.93 37.15 0.29 -1.01 16 2 C -0.12 -1.11 1.78 -91.77 -0.16 -1.27 16 3 H 0.11 1.00 6.45 -51.93 -0.33 0.66 16 4 C -0.15 -1.29 4.20 -26.73 -0.11 -1.40 16 5 C 0.45 4.08 3.13 37.16 0.12 4.20 16 6 F -0.18 -1.83 16.59 2.25 0.04 -1.79 16 7 F -0.18 -1.79 17.32 2.25 0.04 -1.76 16 8 F -0.18 -1.62 14.13 2.25 0.03 -1.59 16 9 C 0.53 6.65 6.89 -10.98 -0.08 6.57 16 10 O -0.55 -8.46 15.53 5.56 0.09 -8.37 16 11 N -0.60 -7.63 2.98 -173.03 -0.52 -8.15 16 12 C 0.10 1.20 5.34 -3.93 -0.02 1.18 16 13 C -0.15 -2.39 5.64 -26.83 -0.15 -2.54 16 14 C 0.18 3.25 2.73 -67.88 -0.19 3.06 16 15 N -0.72 -17.25 5.12 -53.38 -0.27 -17.52 16 16 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 20 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C -0.14 -2.17 5.55 -26.61 -0.15 -2.32 16 25 C 0.12 1.55 6.42 -3.71 -0.02 1.53 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 28 H 0.08 0.62 5.85 -51.93 -0.30 0.31 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.12 0.99 8.06 -51.93 -0.42 0.57 16 31 H 0.08 0.77 4.88 -51.93 -0.25 0.52 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.22 7.04 -51.93 -0.37 0.85 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -30.48 336.54 -6.21 -36.70 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.68 Total: 6.48 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.72 Total: 0.99 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.06 Total: -52.47 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.48 -6.21 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201767979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.569 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds