Wall clock time and date at job start Tue Mar 31 2020 10:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46726 * 2 1 4 4 C 1.34232 * 116.99650 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99719 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00083 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47151 * 174.29318 * 6 4 3 8 8 C 1.46895 * 111.00040 * 287.80038 * 7 6 4 9 9 C 1.50700 * 109.46893 * 295.11887 * 8 7 6 10 10 H 1.08006 * 120.00280 * 5.35214 * 9 8 7 11 11 C 1.37875 * 120.00399 * 185.35620 * 9 8 7 12 12 N 1.31515 * 120.00409 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99763 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47065 * 90.00075 * 13 11 9 15 15 H 1.48504 * 109.47214 * 210.00407 * 13 11 9 16 16 H 1.48501 * 109.47333 * 330.00239 * 13 11 9 17 17 C 1.46894 * 110.99823 * 163.84036 * 7 6 4 18 18 C 1.50697 * 109.47054 * 190.00146 * 17 7 6 19 19 C 1.38426 * 120.44395 * 260.00227 * 18 17 7 20 20 C 1.38788 * 118.48602 * 179.72461 * 19 18 17 21 21 C 1.38097 * 119.28517 * 0.27548 * 20 19 18 22 22 N 1.31935 * 120.83451 * 0.02562 * 21 20 19 23 23 C 1.32280 * 121.64852 * 359.97362 * 22 21 20 24 24 O 1.35671 * 119.68121 * 180.02562 * 23 22 21 25 25 C 1.42899 * 117.00324 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47310 * 59.99765 * 1 2 3 27 27 H 1.09006 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47369 * 299.99597 * 1 2 3 29 29 H 1.08995 * 109.46703 * 239.99816 * 2 1 3 30 30 H 1.09001 * 109.47310 * 120.00235 * 2 1 3 31 31 H 1.09004 * 109.46903 * 54.29882 * 6 4 3 32 32 H 1.08997 * 109.47264 * 294.29533 * 6 4 3 33 33 H 1.08993 * 109.47930 * 55.11693 * 8 7 6 34 34 H 1.09003 * 109.47187 * 175.12869 * 8 7 6 35 35 H 0.97007 * 120.00088 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.47203 * 70.00412 * 17 7 6 37 37 H 1.09001 * 109.47445 * 310.00462 * 17 7 6 38 38 H 1.08001 * 120.75540 * 359.97438 * 19 18 17 39 39 H 1.07995 * 120.35792 * 180.24838 * 20 19 18 40 40 H 1.08000 * 119.57617 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46906 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.46995 * 299.99865 * 25 24 23 43 43 H 1.08997 * 109.47022 * 60.00549 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3813 2.8633 0.1385 8 6 5.7615 2.4687 1.5014 9 6 5.3388 3.5418 2.4713 10 1 4.7621 4.3866 2.1245 11 6 5.6882 3.4453 3.8016 12 7 5.3188 4.3815 4.6481 13 14 6.6850 1.9839 4.4017 14 1 8.1330 2.2974 4.3007 15 1 6.3384 1.6958 5.8167 16 1 6.3760 0.7967 3.5649 17 6 6.0109 4.1365 -0.2361 18 6 7.5043 3.9530 -0.3195 19 6 8.3195 4.3525 0.7256 20 6 9.6888 4.1590 0.6082 21 6 10.1936 3.5836 -0.5411 22 7 9.3917 3.2185 -1.5232 23 6 8.0818 3.3865 -1.4484 24 8 7.2943 2.9960 -2.4818 25 6 7.9478 2.4148 -3.6119 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.5050 3.5029 0.8340 32 1 3.6693 3.4343 -0.9370 33 1 5.2687 1.5314 1.7592 34 1 6.8423 2.3374 1.5534 35 1 5.5650 4.3138 5.5840 36 1 5.7790 4.8914 0.5152 37 1 5.6298 4.4592 -1.2050 38 1 7.8991 4.8007 1.6137 39 1 10.3524 4.4557 1.4069 40 1 11.2585 3.4312 -0.6376 41 1 7.2050 2.1484 -4.3639 42 1 8.6505 3.1330 -4.0344 43 1 8.4862 1.5200 -3.2997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206596377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:06 Heat of formation + Delta-G solvation = -74.264158 kcal Electronic energy + Delta-G solvation = -26317.464860 eV Core-core repulsion = 22556.980461 eV Total energy + Delta-G solvation = -3760.484399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34300 -39.88617 -37.52984 -37.05220 -35.73666 -32.64914 -32.23603 -31.56186 -30.64843 -28.42844 -27.34089 -26.83114 -24.51558 -23.01283 -22.53382 -22.20986 -20.81559 -19.55621 -17.93722 -17.42221 -16.94327 -16.62076 -16.27664 -15.73652 -15.66109 -15.03408 -14.66385 -14.55244 -14.17154 -13.91792 -13.75180 -13.46278 -13.01731 -12.92757 -12.68955 -12.49119 -12.43321 -12.06418 -11.82502 -11.61873 -11.41353 -11.36483 -11.17034 -10.97493 -10.90904 -10.75948 -10.44444 -10.20633 -9.99067 -9.77723 -9.62536 -9.28222 -9.25896 -8.65057 -8.02475 -7.28712 -6.18829 -4.18852 1.51980 1.73044 2.85651 3.05664 3.23600 3.32407 3.42013 3.47977 4.14908 4.35343 4.63239 4.95066 5.03786 5.08344 5.16427 5.26355 5.30463 5.38845 5.39627 5.44700 5.48103 5.50582 5.70497 5.72671 5.79915 5.84377 5.85812 5.86326 6.02635 6.14841 6.23175 6.39680 6.54251 6.73219 6.83279 6.89434 6.93325 7.13855 7.45700 7.62435 7.87147 7.93737 8.20051 8.33483 8.42613 8.80893 9.45170 10.92994 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.006225 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.330517 B = 4496.808597 C = 6618.478551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.366 6.366 4 C 0.467 3.533 5 O -0.492 6.492 6 C 0.068 3.932 7 N -0.512 5.512 8 C 0.152 3.848 9 C -0.556 4.556 10 H 0.078 0.922 11 C 0.080 3.920 12 N -0.894 5.894 13 Si 0.867 3.133 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.263 1.263 17 C 0.112 3.888 18 C -0.127 4.127 19 C -0.023 4.023 20 C -0.216 4.216 21 C 0.125 3.875 22 N -0.551 5.551 23 C 0.331 3.669 24 O -0.293 6.293 25 C 0.043 3.957 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -2.199 -11.919 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.377 6.377 6 C -0.061 4.061 7 N -0.236 5.236 8 C 0.026 3.974 9 C -0.594 4.594 10 H 0.096 0.904 11 C -0.123 4.123 12 N -0.532 5.532 13 Si 0.694 3.306 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.016 4.016 18 C -0.130 4.130 19 C -0.049 4.049 20 C -0.237 4.237 21 C -0.031 4.031 22 N -0.275 5.275 23 C 0.152 3.848 24 O -0.200 6.200 25 C -0.053 4.053 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.558 -3.217 -12.860 13.268 hybrid contribution 0.273 -0.154 1.821 1.848 sum 0.831 -3.371 -11.039 11.572 Atomic orbital electron populations 1.21784 0.93106 1.02473 1.03393 1.22880 0.94916 0.81151 1.02236 1.86495 1.25512 1.31531 1.84865 1.23849 0.79773 0.93289 0.72213 1.90619 1.60094 1.42988 1.44036 1.21436 0.90964 0.89789 1.03928 1.62080 1.04176 1.28907 1.28473 1.20261 0.96675 0.96684 0.83819 1.21646 1.36243 1.08407 0.93106 0.90417 1.24850 0.95255 0.95525 0.96703 1.69914 1.45921 1.33519 1.03851 0.86958 0.81027 0.84376 0.78257 1.19901 1.21230 1.18774 1.20685 0.88593 0.91903 1.00376 1.19766 0.97352 1.03239 0.92646 1.21666 0.92596 0.93404 0.97203 1.21954 0.96288 1.05384 1.00026 1.22215 0.98652 0.93570 0.88630 1.67251 1.03961 1.23740 1.32555 1.19629 0.86631 0.91006 0.87542 1.86320 1.33589 1.74728 1.25321 1.22741 0.98127 0.97948 0.86448 0.91693 0.90708 0.91468 0.91719 0.91534 0.88938 0.88265 0.94844 0.95359 0.92594 0.91525 0.91108 0.83144 0.85051 0.83155 0.89223 0.92979 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.25 10.22 -39.26 -0.40 -6.65 16 4 C 0.47 9.15 7.54 36.01 0.27 9.42 16 5 O -0.49 -11.06 14.91 -18.75 -0.28 -11.34 16 6 C 0.07 1.27 5.43 -4.97 -0.03 1.25 16 7 N -0.51 -10.73 4.29 -238.97 -1.03 -11.75 16 8 C 0.15 3.68 3.60 -4.98 -0.02 3.67 16 9 C -0.56 -14.46 7.88 -34.44 -0.27 -14.73 16 10 H 0.08 2.12 6.21 -52.48 -0.33 1.80 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 12 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 13 Si 0.87 21.38 27.37 -169.99 -4.65 16.73 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.26 -6.62 6.70 56.52 0.38 -6.24 16 17 C 0.11 2.10 4.56 -4.98 -0.02 2.08 16 18 C -0.13 -2.37 4.60 -104.32 -0.48 -2.85 16 19 C -0.02 -0.41 8.93 -39.31 -0.35 -0.76 16 20 C -0.22 -3.33 10.11 -39.43 -0.40 -3.73 16 21 C 0.12 1.86 11.18 -17.56 -0.20 1.66 16 22 N -0.55 -9.35 9.22 -13.33 -0.12 -9.47 16 23 C 0.33 6.01 7.47 -17.12 -0.13 5.88 16 24 O -0.29 -5.04 9.72 -18.72 -0.18 -5.23 16 25 C 0.04 0.57 10.38 101.05 1.05 1.62 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.09 1.84 6.43 -51.93 -0.33 1.50 16 32 H 0.10 1.53 7.80 -51.93 -0.41 1.12 16 33 H 0.03 0.89 6.01 -51.93 -0.31 0.58 16 34 H 0.03 0.71 5.85 -51.93 -0.30 0.41 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.32 6.23 -51.93 -0.32 1.00 16 37 H 0.07 1.18 7.58 -51.93 -0.39 0.79 16 38 H 0.15 2.86 8.06 -52.49 -0.42 2.43 16 39 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -32.34 357.83 -6.76 -39.09 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.20 Total: 2.75 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.06 Total: 5.53 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.37 Total: -46.29 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.86 Total: -23.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.65 Total: 16.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.34 -6.76 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206596377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.171 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds