Wall clock time and date at job start Tue Mar 31 2020 09:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47571 * 2 1 4 4 C 1.53006 * 109.47117 * 120.00093 * 2 1 3 5 5 C 1.53000 * 109.46869 * 292.76294 * 4 2 1 6 6 F 1.39897 * 109.47398 * 65.50150 * 5 4 2 7 7 F 1.39898 * 109.47151 * 185.50176 * 5 4 2 8 8 F 1.39902 * 109.47148 * 305.49767 * 5 4 2 9 9 C 1.50700 * 109.47171 * 239.99683 * 2 1 3 10 10 O 1.21277 * 119.99998 * 239.99993 * 9 2 1 11 11 N 1.34777 * 120.00061 * 60.00049 * 9 2 1 12 12 C 1.46496 * 120.00276 * 179.97438 * 11 9 2 13 13 H 1.09000 * 110.64120 * 31.86473 * 12 11 9 14 14 C 1.54336 * 110.85236 * 268.69331 * 12 11 9 15 15 N 1.47023 * 107.26433 * 219.67150 * 14 12 11 16 16 C 1.36931 * 125.64567 * 178.84872 * 15 14 12 17 17 H 1.08004 * 119.99988 * 172.21890 * 16 15 14 18 18 C 1.38814 * 120.00045 * 352.21868 * 16 15 14 19 19 N 1.31619 * 119.99817 * 212.59528 * 18 16 15 20 20 Si 1.86794 * 119.99992 * 32.59599 * 18 16 15 21 21 H 1.48510 * 109.47018 * 174.06111 * 20 18 16 22 22 H 1.48497 * 109.47284 * 294.05884 * 20 18 16 23 23 H 1.48499 * 109.47437 * 54.05969 * 20 18 16 24 24 C 1.47420 * 108.70348 * 358.58981 * 15 14 12 25 25 C 1.54908 * 104.83548 * 24.35067 * 24 15 14 26 26 H 1.09001 * 111.00011 * 81.06759 * 25 24 15 27 27 C 1.52997 * 111.00652 * 204.91623 * 25 24 15 28 28 H 1.09000 * 109.47154 * 307.12547 * 1 2 3 29 29 H 1.08997 * 109.46784 * 67.12728 * 1 2 3 30 30 H 1.09003 * 109.47235 * 187.12570 * 1 2 3 31 31 H 1.09001 * 109.47351 * 52.76276 * 4 2 1 32 32 H 1.09006 * 109.47118 * 172.76573 * 4 2 1 33 33 H 0.97006 * 119.99365 * 0.02562 * 11 9 2 34 34 H 1.08997 * 109.98661 * 100.19748 * 14 12 11 35 35 H 1.08999 * 109.77857 * 339.03126 * 14 12 11 36 36 H 0.96999 * 120.00435 * 354.99191 * 19 18 16 37 37 H 1.08998 * 110.37292 * 143.19620 * 24 15 14 38 38 H 1.09002 * 110.36686 * 265.40344 * 24 15 14 39 39 H 1.09003 * 109.47146 * 58.54692 * 27 25 24 40 40 H 1.08997 * 109.47369 * 178.54624 * 27 25 24 41 41 H 1.09006 * 109.47236 * 298.55105 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6838 0.0972 2.4919 6 9 0.2934 0.1370 2.6413 7 9 2.2574 -0.4962 3.6214 8 9 2.1750 1.3994 2.3491 9 6 2.0323 -0.7105 -1.2304 10 8 2.7296 -1.6965 -1.1191 11 7 1.7068 -0.2501 -2.4546 12 6 2.1955 -0.9404 -3.6507 13 1 2.2927 -2.0099 -3.4643 14 6 3.5403 -0.3444 -4.1180 15 7 3.5084 -0.2943 -5.5870 16 6 4.5049 0.1915 -6.3908 17 1 4.4416 0.0709 -7.4622 18 6 5.5964 0.8391 -5.8285 19 7 6.1888 1.8172 -6.4803 20 14 6.2244 0.3225 -4.1469 21 1 7.4740 1.0626 -3.8364 22 1 5.1981 0.6310 -3.1189 23 1 6.5006 -1.1365 -4.1483 24 6 2.2285 -0.8595 -6.0516 25 6 1.2578 -0.6767 -4.8583 26 1 0.8602 0.3378 -4.8301 27 6 0.1265 -1.7054 -4.9091 28 1 -0.3633 0.6203 0.8194 29 1 -0.3633 0.3994 -0.9469 30 1 -0.3634 -1.0197 0.1275 31 1 1.5749 -1.7048 1.3164 32 1 3.1224 -0.8347 1.1869 33 1 1.1494 0.5389 -2.5435 34 1 4.3635 -0.9771 -3.7864 35 1 3.6577 0.6616 -3.7152 36 1 5.9098 2.0374 -7.3829 37 1 1.8663 -0.3132 -6.9225 38 1 2.3449 -1.9168 -6.2896 39 1 0.5482 -2.7104 -4.8929 40 1 -0.5258 -1.5711 -4.0462 41 1 -0.4491 -1.5677 -5.8246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208487821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:40 Heat of formation + Delta-G solvation = -169.603857 kcal Electronic energy + Delta-G solvation = -26670.476749 eV Core-core repulsion = 22364.001370 eV Total energy + Delta-G solvation = -4306.475379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.38545 -47.88186 -47.82848 -40.16947 -38.07440 -35.12949 -34.20674 -32.79941 -31.03931 -29.55595 -27.92683 -26.08022 -25.15073 -23.58827 -22.37575 -20.75178 -20.50517 -19.72954 -18.82502 -18.73515 -17.78227 -17.45505 -16.58226 -16.34529 -15.60797 -15.09817 -14.88544 -14.76638 -14.53657 -14.29582 -14.05368 -14.00055 -13.79987 -13.78588 -13.42677 -13.19799 -13.04605 -12.99065 -12.68953 -12.44071 -12.00771 -11.86860 -11.76815 -11.65829 -11.58070 -11.22815 -11.05008 -10.71490 -10.48141 -10.03623 -9.82726 -9.72276 -9.31035 -8.74137 -8.30825 -7.08477 -6.40659 -3.14950 2.45249 2.58693 3.08944 3.43722 3.56635 3.60834 3.71402 3.74091 3.81331 4.34831 4.52255 4.60317 4.61571 4.78676 4.90352 4.96740 5.16662 5.20057 5.29013 5.30156 5.40611 5.45418 5.56716 5.68129 5.71870 5.80987 5.83979 5.94081 6.08611 6.22336 6.35040 6.45728 6.53432 6.72909 6.83764 7.51548 7.70383 8.19942 8.32025 9.02088 9.59602 10.25755 11.10798 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.004117 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.976753 B = 6799.616045 C = 7953.462045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 H 0.113 0.887 4 C -0.149 4.149 5 C 0.453 3.547 6 F -0.182 7.182 7 F -0.183 7.183 8 F -0.182 7.182 9 C 0.522 3.478 10 O -0.538 6.538 11 N -0.711 5.711 12 C 0.136 3.864 13 H 0.097 0.903 14 C 0.108 3.892 15 N -0.609 5.609 16 C -0.343 4.343 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.908 5.908 20 Si 1.047 2.953 21 H -0.298 1.298 22 H -0.279 1.279 23 H -0.297 1.297 24 C 0.144 3.856 25 C -0.112 4.112 26 H 0.082 0.918 27 C -0.137 4.137 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.401 0.599 34 H 0.031 0.969 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.804 -3.734 15.637 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.138 4.138 3 H 0.131 0.869 4 C -0.187 4.187 5 C 0.399 3.601 6 F -0.163 7.163 7 F -0.165 7.165 8 F -0.164 7.164 9 C 0.308 3.692 10 O -0.414 6.414 11 N -0.361 5.361 12 C 0.031 3.969 13 H 0.115 0.885 14 C -0.018 4.018 15 N -0.337 5.337 16 C -0.469 4.469 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.548 5.548 20 Si 0.879 3.121 21 H -0.226 1.226 22 H -0.206 1.206 23 H -0.225 1.225 24 C 0.017 3.983 25 C -0.132 4.132 26 H 0.100 0.900 27 C -0.195 4.195 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.235 0.765 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.105 -4.026 16.820 22.317 hybrid contribution -1.242 0.031 -1.068 1.638 sum -15.347 -3.995 15.752 22.352 Atomic orbital electron populations 1.22097 0.91753 1.03781 1.03878 1.21292 0.98623 1.01654 0.92264 0.86946 1.22722 1.06895 0.99949 0.89173 1.20589 0.74384 0.79012 0.86075 1.93141 1.30536 1.96474 1.96184 1.93195 1.84633 1.83634 1.55028 1.93194 1.87647 1.39743 1.95796 1.20161 0.80094 0.84554 0.84435 1.90727 1.37620 1.26410 1.86690 1.45922 1.53038 1.31812 1.05373 1.22164 0.94431 0.97356 0.82976 0.88455 1.22290 0.94268 0.98795 0.86465 1.44785 1.15542 1.73528 0.99862 1.19929 1.01308 1.35386 0.90291 0.90262 1.25601 0.96404 0.93728 1.05708 1.70954 1.49630 1.21100 1.13083 0.84229 0.75781 0.75724 0.76353 1.22594 1.20560 1.22457 1.21558 0.85681 0.96518 0.94497 1.22641 0.95193 0.99759 0.95630 0.89981 1.21689 0.97634 0.98807 1.01345 0.90209 0.91312 0.91423 0.86489 0.86092 0.76462 0.95198 0.93164 0.92596 0.93249 0.95882 0.92526 0.92941 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.42 37.16 0.31 -0.85 16 2 C -0.12 -1.11 2.64 -91.77 -0.24 -1.36 16 3 H 0.11 0.99 7.45 -51.93 -0.39 0.61 16 4 C -0.15 -1.37 4.21 -26.73 -0.11 -1.48 16 5 C 0.45 4.17 3.14 37.16 0.12 4.29 16 6 F -0.18 -1.62 14.40 2.25 0.03 -1.59 16 7 F -0.18 -1.86 17.32 2.25 0.04 -1.82 16 8 F -0.18 -1.86 16.46 2.25 0.04 -1.82 16 9 C 0.52 7.07 7.15 -10.99 -0.08 6.99 16 10 O -0.54 -9.31 15.52 5.56 0.09 -9.23 16 11 N -0.71 -9.50 4.95 -52.03 -0.26 -9.76 16 12 C 0.14 2.26 2.78 -66.09 -0.18 2.08 16 13 H 0.10 1.71 7.42 -51.93 -0.39 1.32 16 14 C 0.11 2.39 4.34 -3.06 -0.01 2.37 16 15 N -0.61 -14.88 3.39 -170.07 -0.58 -15.46 16 16 C -0.34 -9.83 10.41 -15.06 -0.16 -9.99 16 17 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 18 C -0.01 -0.37 5.45 -17.43 -0.10 -0.47 16 19 N -0.91 -28.40 13.70 55.49 0.76 -27.64 16 20 Si 1.05 27.19 24.91 -169.99 -4.23 22.95 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.28 -6.71 5.03 56.52 0.28 -6.42 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 24 C 0.14 2.78 6.70 -2.53 -0.02 2.76 16 25 C -0.11 -1.67 3.27 -88.47 -0.29 -1.96 16 26 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 27 C -0.14 -1.58 9.29 37.16 0.35 -1.24 16 28 H 0.08 0.55 5.98 -51.93 -0.31 0.24 16 29 H 0.07 0.44 7.37 -51.93 -0.38 0.05 16 30 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.12 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.12 1.20 7.87 -51.93 -0.41 0.80 16 33 H 0.40 4.19 7.91 -40.82 -0.32 3.86 16 34 H 0.03 0.74 5.21 -51.93 -0.27 0.47 16 35 H 0.05 1.18 6.06 -51.93 -0.31 0.87 16 36 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 39 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -33.57 334.56 -5.32 -38.90 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.84 Total: -0.75 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.41 Total: 1.16 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.07 Total: -52.85 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -4.23 Total: 22.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.57 -5.32 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208487821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.706 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds