Wall clock time and date at job start Tue Mar 31 2020 09:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47571 * 2 1 4 4 C 1.53006 * 109.47117 * 120.00093 * 2 1 3 5 5 C 1.53000 * 109.46869 * 292.76294 * 4 2 1 6 6 F 1.39897 * 109.47398 * 65.50150 * 5 4 2 7 7 F 1.39898 * 109.47151 * 185.50176 * 5 4 2 8 8 F 1.39902 * 109.47148 * 305.49767 * 5 4 2 9 9 C 1.50700 * 109.47171 * 239.99683 * 2 1 3 10 10 O 1.21277 * 119.99998 * 239.99993 * 9 2 1 11 11 N 1.34777 * 120.00061 * 60.00049 * 9 2 1 12 12 C 1.46496 * 120.00276 * 179.97438 * 11 9 2 13 13 H 1.09000 * 110.64120 * 31.86473 * 12 11 9 14 14 C 1.54336 * 110.85236 * 268.69331 * 12 11 9 15 15 N 1.47023 * 107.26433 * 219.67150 * 14 12 11 16 16 C 1.36931 * 125.64567 * 178.84872 * 15 14 12 17 17 H 1.08004 * 119.99988 * 172.21890 * 16 15 14 18 18 C 1.38814 * 120.00045 * 352.21868 * 16 15 14 19 19 N 1.31619 * 119.99817 * 212.59528 * 18 16 15 20 20 Si 1.86794 * 119.99992 * 32.59599 * 18 16 15 21 21 H 1.48510 * 109.47018 * 174.06111 * 20 18 16 22 22 H 1.48497 * 109.47284 * 294.05884 * 20 18 16 23 23 H 1.48499 * 109.47437 * 54.05969 * 20 18 16 24 24 C 1.47420 * 108.70348 * 358.58981 * 15 14 12 25 25 C 1.54908 * 104.83548 * 24.35067 * 24 15 14 26 26 H 1.09001 * 111.00011 * 81.06759 * 25 24 15 27 27 C 1.52997 * 111.00652 * 204.91623 * 25 24 15 28 28 H 1.09000 * 109.47154 * 307.12547 * 1 2 3 29 29 H 1.08997 * 109.46784 * 67.12728 * 1 2 3 30 30 H 1.09003 * 109.47235 * 187.12570 * 1 2 3 31 31 H 1.09001 * 109.47351 * 52.76276 * 4 2 1 32 32 H 1.09006 * 109.47118 * 172.76573 * 4 2 1 33 33 H 0.97006 * 119.99365 * 0.02562 * 11 9 2 34 34 H 1.08997 * 109.98661 * 100.19748 * 14 12 11 35 35 H 1.08999 * 109.77857 * 339.03126 * 14 12 11 36 36 H 0.96999 * 120.00435 * 354.99191 * 19 18 16 37 37 H 1.08998 * 110.37292 * 143.19620 * 24 15 14 38 38 H 1.09002 * 110.36686 * 265.40344 * 24 15 14 39 39 H 1.09003 * 109.47146 * 58.54692 * 27 25 24 40 40 H 1.08997 * 109.47369 * 178.54624 * 27 25 24 41 41 H 1.09006 * 109.47236 * 298.55105 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6838 0.0972 2.4919 6 9 0.2934 0.1370 2.6413 7 9 2.2574 -0.4962 3.6214 8 9 2.1750 1.3994 2.3491 9 6 2.0323 -0.7105 -1.2304 10 8 2.7296 -1.6965 -1.1191 11 7 1.7068 -0.2501 -2.4546 12 6 2.1955 -0.9404 -3.6507 13 1 2.2927 -2.0099 -3.4643 14 6 3.5403 -0.3444 -4.1180 15 7 3.5084 -0.2943 -5.5870 16 6 4.5049 0.1915 -6.3908 17 1 4.4416 0.0709 -7.4622 18 6 5.5964 0.8391 -5.8285 19 7 6.1888 1.8172 -6.4803 20 14 6.2244 0.3225 -4.1469 21 1 7.4740 1.0626 -3.8364 22 1 5.1981 0.6310 -3.1189 23 1 6.5006 -1.1365 -4.1483 24 6 2.2285 -0.8595 -6.0516 25 6 1.2578 -0.6767 -4.8583 26 1 0.8602 0.3378 -4.8301 27 6 0.1265 -1.7054 -4.9091 28 1 -0.3633 0.6203 0.8194 29 1 -0.3633 0.3994 -0.9469 30 1 -0.3634 -1.0197 0.1275 31 1 1.5749 -1.7048 1.3164 32 1 3.1224 -0.8347 1.1869 33 1 1.1494 0.5389 -2.5435 34 1 4.3635 -0.9771 -3.7864 35 1 3.6577 0.6616 -3.7152 36 1 5.9098 2.0374 -7.3829 37 1 1.8663 -0.3132 -6.9225 38 1 2.3449 -1.9168 -6.2896 39 1 0.5482 -2.7104 -4.8929 40 1 -0.5258 -1.5711 -4.0462 41 1 -0.4491 -1.5677 -5.8246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208487821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:39 Heat of formation + Delta-G solvation = -193.070018 kcal Electronic energy + Delta-G solvation = -26671.494318 eV Core-core repulsion = 22364.001370 eV Total energy + Delta-G solvation = -4307.492948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.12317 -48.61538 -48.57775 -41.32172 -39.50973 -35.98363 -35.78913 -34.40605 -32.78768 -30.46500 -29.27963 -27.64644 -26.03224 -24.91401 -23.54064 -22.41165 -21.75756 -20.83028 -19.61092 -19.56428 -19.51223 -18.56586 -17.79865 -17.45914 -16.90583 -16.30951 -16.11186 -15.68421 -15.51279 -15.35074 -15.11827 -15.04724 -14.87001 -14.80674 -14.75959 -14.62623 -14.32104 -14.07455 -13.94869 -13.52683 -13.10628 -13.07806 -13.04148 -12.66884 -12.48758 -12.37141 -12.26785 -12.18229 -11.99398 -11.90531 -11.57358 -11.15213 -10.87733 -10.60256 -10.03770 -9.15682 -8.74209 -5.40074 1.34401 1.44121 1.52829 1.62878 1.66641 2.10496 2.44202 2.85061 2.93959 2.97700 3.09683 3.36027 3.53249 3.58262 3.77608 3.85399 3.89710 4.01521 4.19063 4.29615 4.44916 4.52155 4.59080 4.65802 4.72875 4.81342 4.84312 4.90938 4.95264 5.01277 5.04995 5.22472 5.28466 5.38409 5.50994 5.59056 6.06943 6.48613 6.79396 7.17028 7.46366 8.11212 8.79141 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.004117 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.976753 B = 6799.616045 C = 7953.462045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 H 0.123 0.877 4 C -0.148 4.148 5 C 0.460 3.540 6 F -0.177 7.177 7 F -0.189 7.189 8 F -0.188 7.188 9 C 0.521 3.479 10 O -0.577 6.577 11 N -0.702 5.702 12 C 0.150 3.850 13 H 0.092 0.908 14 C 0.103 3.897 15 N -0.630 5.630 16 C -0.331 4.331 17 H 0.055 0.945 18 C -0.063 4.063 19 N -0.942 5.942 20 Si 1.084 2.916 21 H -0.305 1.305 22 H -0.251 1.251 23 H -0.298 1.298 24 C 0.133 3.867 25 C -0.092 4.092 26 H 0.097 0.903 27 C -0.130 4.130 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.418 0.582 34 H 0.008 0.992 35 H 0.038 0.962 36 H 0.253 0.747 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.676 -4.088 17.442 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.406 3.594 6 F -0.159 7.159 7 F -0.171 7.171 8 F -0.169 7.169 9 C 0.308 3.692 10 O -0.457 6.457 11 N -0.354 5.354 12 C 0.044 3.956 13 H 0.110 0.890 14 C -0.023 4.023 15 N -0.358 5.358 16 C -0.460 4.460 17 H 0.073 0.927 18 C -0.259 4.259 19 N -0.585 5.585 20 Si 0.913 3.087 21 H -0.233 1.233 22 H -0.176 1.176 23 H -0.226 1.226 24 C 0.008 3.992 25 C -0.112 4.112 26 H 0.115 0.885 27 C -0.187 4.187 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.256 0.744 34 H 0.025 0.975 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.054 -4.376 18.637 25.639 hybrid contribution -0.379 0.087 -1.717 1.761 sum -17.434 -4.289 16.920 24.670 Atomic orbital electron populations 1.22119 0.89598 1.04355 1.05079 1.21294 1.00249 1.01403 0.90063 0.85888 1.22705 1.06423 1.00427 0.89077 1.20491 0.74449 0.78630 0.85794 1.93151 1.30132 1.96433 1.96159 1.93186 1.84794 1.83729 1.55361 1.93186 1.87770 1.40157 1.95799 1.20836 0.79074 0.83998 0.85265 1.90718 1.39339 1.28331 1.87265 1.45781 1.52931 1.32249 1.04400 1.21815 0.92115 0.96852 0.84862 0.89011 1.22329 0.97032 0.97926 0.85031 1.44881 1.16269 1.73688 1.00918 1.19896 1.02089 1.34076 0.89900 0.92728 1.26579 0.97069 0.93902 1.08381 1.71039 1.51060 1.23331 1.13072 0.83720 0.75657 0.75003 0.74336 1.23295 1.17616 1.22632 1.21847 0.84571 0.96224 0.96554 1.22548 0.94764 1.01902 0.91940 0.88507 1.21656 0.96518 0.97203 1.03327 0.89434 0.89822 0.91098 0.85626 0.87095 0.74446 0.97475 0.94460 0.93739 0.93458 0.95379 0.92884 0.90455 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.42 71.98 0.61 -1.06 16 2 C -0.11 -1.75 2.64 -11.54 -0.03 -1.78 16 3 H 0.12 1.77 7.45 -2.39 -0.02 1.75 16 4 C -0.15 -2.40 4.21 30.60 0.13 -2.27 16 5 C 0.46 7.47 3.14 71.98 0.23 7.70 16 6 F -0.18 -2.67 14.40 44.97 0.65 -2.02 16 7 F -0.19 -3.52 17.32 44.97 0.78 -2.74 16 8 F -0.19 -3.42 16.46 44.97 0.74 -2.68 16 9 C 0.52 12.76 7.15 87.66 0.63 13.39 16 10 O -0.58 -19.07 15.52 -3.02 -0.05 -19.12 16 11 N -0.70 -16.55 4.95 -436.91 -2.16 -18.71 16 12 C 0.15 4.65 2.78 46.18 0.13 4.78 16 13 H 0.09 3.03 7.42 -2.39 -0.02 3.01 16 14 C 0.10 4.45 4.34 86.73 0.38 4.83 16 15 N -0.63 -30.63 3.39 -691.98 -2.34 -32.98 16 16 C -0.33 -19.42 10.41 84.03 0.88 -18.54 16 17 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 18 C -0.06 -3.82 5.45 84.86 0.46 -3.35 16 19 N -0.94 -60.66 13.70 21.65 0.30 -60.37 16 20 Si 1.08 56.05 24.91 68.60 1.71 57.76 16 21 H -0.30 -15.95 7.11 99.48 0.71 -15.24 16 22 H -0.25 -11.74 5.03 99.48 0.50 -11.23 16 23 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 24 C 0.13 4.95 6.70 86.86 0.58 5.53 16 25 C -0.09 -2.44 3.27 -9.40 -0.03 -2.47 16 26 H 0.10 2.33 8.01 -2.39 -0.02 2.31 16 27 C -0.13 -2.44 9.29 71.98 0.67 -1.77 16 28 H 0.09 0.86 5.98 -2.39 -0.01 0.85 16 29 H 0.08 0.67 7.37 -2.39 -0.02 0.65 16 30 H 0.07 0.75 8.11 -2.39 -0.02 0.73 16 31 H 0.13 1.82 8.11 -2.39 -0.02 1.80 16 32 H 0.11 2.07 7.87 -2.38 -0.02 2.05 16 33 H 0.42 7.03 7.91 -92.70 -0.73 6.30 16 34 H 0.01 0.37 5.21 -2.39 -0.01 0.35 16 35 H 0.04 1.71 6.06 -2.39 -0.01 1.69 16 36 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.03 8.04 -2.39 -0.02 1.01 16 39 H 0.05 1.06 8.11 -2.39 -0.02 1.05 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -74.88 334.56 4.32 -70.56 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.08 Total: 5.32 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 4.62 Total: 4.98 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.21 Total: -112.05 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 2.17 Total: -7.44 kcal Atomic # 14 Polarization: 56.05 SS G_CDS: 1.71 Total: 57.76 kcal Total: -74.88 4.32 -70.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208487821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.513 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds