Wall clock time and date at job start Tue Mar 31 2020 09:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.63963 * 2 1 4 4 C 1.54334 * 110.85086 * 236.83407 * 2 1 3 5 5 N 1.47024 * 107.26646 * 219.67074 * 4 2 1 6 6 C 1.36932 * 125.64836 * 178.85202 * 5 4 2 7 7 H 1.08001 * 120.00172 * 347.84778 * 6 5 4 8 8 C 1.38810 * 119.99990 * 167.85563 * 6 5 4 9 9 N 1.31624 * 119.99867 * 326.24876 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 145.98140 * 8 6 5 11 11 H 1.48506 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47535 * 119.99869 * 10 8 6 13 13 H 1.48503 * 109.47098 * 239.99494 * 10 8 6 14 14 C 1.47422 * 108.70201 * 358.58505 * 5 4 2 15 15 C 1.54913 * 104.83247 * 24.35686 * 14 5 4 16 16 H 1.08995 * 111.00610 * 81.06475 * 15 14 5 17 17 N 1.46497 * 111.00373 * 204.87955 * 15 14 5 18 18 C 1.34777 * 120.00030 * 273.54696 * 17 15 14 19 19 O 1.21279 * 120.00139 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00191 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47494 * 179.97438 * 20 18 17 22 22 C 1.52992 * 109.47633 * 179.97438 * 21 20 18 23 23 C 1.52993 * 109.47482 * 179.97438 * 22 21 20 24 24 F 1.39905 * 109.47193 * 60.00096 * 23 22 21 25 25 F 1.39898 * 109.47362 * 179.97438 * 23 22 21 26 26 F 1.39898 * 109.47373 * 300.00143 * 23 22 21 27 27 H 1.09000 * 109.47522 * 296.85818 * 1 2 3 28 28 H 1.09001 * 109.47262 * 56.85915 * 1 2 3 29 29 H 1.09001 * 109.47218 * 176.85755 * 1 2 3 30 30 H 1.09007 * 109.99211 * 100.19376 * 4 2 1 31 31 H 1.09002 * 109.77986 * 339.02692 * 4 2 1 32 32 H 0.96994 * 119.99575 * 353.97716 * 9 8 6 33 33 H 1.08998 * 110.36625 * 143.19544 * 14 5 4 34 34 H 1.08997 * 110.36749 * 265.40909 * 14 5 4 35 35 H 0.97006 * 120.00267 * 93.54539 * 17 15 14 36 36 H 1.08998 * 109.47467 * 299.99613 * 20 18 17 37 37 H 1.08997 * 109.47611 * 59.99448 * 20 18 17 38 38 H 1.09008 * 109.46766 * 300.00361 * 21 20 18 39 39 H 1.08997 * 109.46928 * 59.99292 * 21 20 18 40 40 H 1.09006 * 109.47068 * 300.00465 * 22 21 20 41 41 H 1.09001 * 109.47041 * 59.99484 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7364 6 6 4.0043 -2.3994 -1.4977 7 1 3.6582 -2.7053 -2.4739 8 6 5.2194 -2.8653 -1.0147 9 7 5.9612 -2.0954 -0.2469 10 14 5.7985 -4.5875 -1.4484 11 1 4.7870 -5.2468 -2.3131 12 1 7.0924 -4.5071 -2.1726 13 1 5.9761 -5.3781 -0.2039 14 6 3.4633 -1.2485 0.6896 15 6 2.0789 -0.7934 1.2151 16 1 1.4452 -1.6511 1.4403 17 7 2.2214 0.0730 2.3878 18 6 2.3156 -0.4687 3.6184 19 8 2.2819 -1.6733 3.7549 20 6 2.4615 0.4225 4.8248 21 6 2.5460 -0.4378 6.0872 22 6 2.6949 0.4669 7.3120 23 6 2.7787 -0.3933 8.5744 24 9 3.8856 -1.2444 8.4861 25 9 2.9154 0.4340 9.6943 26 9 1.6125 -1.1562 8.6972 27 1 -0.3634 0.4643 0.9168 28 1 -0.3634 0.5618 -0.8605 29 1 -0.3634 -1.0261 -0.0563 30 1 2.3814 -0.1003 -1.9964 31 1 1.3156 -1.4714 -1.5804 32 1 5.7025 -1.1740 -0.0896 33 1 3.7961 -2.1404 1.2205 34 1 4.1945 -0.4477 0.7992 35 1 2.2480 1.0365 2.2787 36 1 3.3695 1.0179 4.7291 37 1 1.5986 1.0848 4.8940 38 1 1.6377 -1.0329 6.1828 39 1 3.4088 -1.1003 6.0183 40 1 3.6033 1.0617 7.2161 41 1 1.8323 1.1298 7.3810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208855690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:57 Heat of formation + Delta-G solvation = -190.090761 kcal Electronic energy + Delta-G solvation = -25720.140653 eV Core-core repulsion = 21412.776895 eV Total energy + Delta-G solvation = -4307.363758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.30528 -47.82378 -47.76079 -39.79815 -37.85727 -35.18543 -34.12397 -32.84072 -30.40223 -30.07830 -27.79301 -25.54731 -24.82684 -23.45299 -22.03949 -20.65376 -20.22767 -19.60312 -18.76630 -18.51192 -17.80892 -17.51233 -16.55975 -16.09773 -15.95650 -14.83566 -14.71463 -14.56934 -14.23043 -14.14614 -14.05248 -13.92724 -13.89847 -13.68735 -13.40333 -13.13901 -12.98401 -12.94355 -12.51925 -12.37941 -12.05741 -11.81049 -11.70339 -11.49258 -11.13418 -10.87176 -10.69468 -10.63647 -10.42784 -10.09546 -9.99130 -9.68594 -9.63088 -8.69739 -8.31060 -6.96167 -6.13939 -3.07433 2.52320 2.80497 3.25235 3.55430 3.59059 3.60692 3.72984 3.80374 3.80713 4.52103 4.61733 4.62341 4.74640 4.89322 5.03037 5.07993 5.11078 5.17894 5.24967 5.29717 5.36757 5.63266 5.72980 5.77612 5.84834 5.95401 5.97532 6.03749 6.20408 6.28003 6.56521 6.59922 6.78906 6.98533 7.08201 7.69887 7.80624 8.41548 8.50280 9.01090 9.83099 10.37208 11.20479 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003119 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.711770 B = 8974.397046 C =10295.726860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.601 5.601 6 C -0.345 4.345 7 H 0.068 0.932 8 C -0.020 4.020 9 N -0.907 5.907 10 Si 1.060 2.940 11 H -0.291 1.291 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.141 3.859 15 C 0.130 3.870 16 H 0.093 0.907 17 N -0.717 5.717 18 C 0.509 3.491 19 O -0.534 6.534 20 C -0.136 4.136 21 C -0.112 4.112 22 C -0.166 4.166 23 C 0.452 3.548 24 F -0.181 7.181 25 F -0.188 7.188 26 F -0.183 7.183 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.267 0.733 33 H 0.056 0.944 34 H 0.024 0.976 35 H 0.396 0.604 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 11.033 14.509 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.472 4.472 7 H 0.086 0.914 8 C -0.223 4.223 9 N -0.546 5.546 10 Si 0.890 3.110 11 H -0.218 1.218 12 H -0.223 1.223 13 H -0.216 1.216 14 C 0.014 3.986 15 C 0.025 3.975 16 H 0.111 0.889 17 N -0.368 5.368 18 C 0.295 3.705 19 O -0.410 6.410 20 C -0.176 4.176 21 C -0.150 4.150 22 C -0.204 4.204 23 C 0.398 3.602 24 F -0.163 7.163 25 F -0.170 7.170 26 F -0.165 7.165 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.230 0.770 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.981 8.923 14.821 19.492 hybrid contribution -1.064 1.624 -0.214 1.953 sum -10.045 10.547 14.607 20.628 Atomic orbital electron populations 1.21736 0.94634 1.02051 1.01051 1.22418 0.95516 0.99161 0.95825 0.90681 1.21361 0.90562 0.92972 0.93570 1.44475 1.31979 1.51298 1.05102 1.19700 1.02089 1.22965 1.02485 0.91392 1.25668 0.91920 1.05120 0.99564 1.70740 1.35356 1.07798 1.40747 0.83639 0.75081 0.76344 0.75959 1.21752 1.22262 1.21552 1.21768 0.92110 0.98902 0.85775 1.22377 0.99297 0.92857 0.83013 0.88862 1.45925 1.74584 1.10033 1.06247 1.20499 0.76414 0.89219 0.84391 1.90752 1.49049 1.15143 1.86048 1.21574 1.04559 0.98744 0.92724 1.21347 1.05626 0.97414 0.90563 1.22914 1.07407 0.98914 0.91190 1.20603 0.73678 0.79712 0.86253 1.93212 1.54019 1.72704 1.96346 1.93181 1.95642 1.71938 1.56228 1.93192 1.49202 1.77562 1.96533 0.93009 0.92647 0.92375 0.95768 0.95203 0.92181 0.92541 0.95858 0.77019 0.88466 0.88725 0.89673 0.89424 0.87092 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.16 37.16 0.34 -1.39 16 2 C -0.11 -1.73 3.16 -88.78 -0.28 -2.01 16 3 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 4 C 0.14 2.90 6.85 -3.06 -0.02 2.88 16 5 N -0.60 -15.45 3.33 -170.06 -0.57 -16.02 16 6 C -0.35 -9.96 9.97 -15.06 -0.15 -10.11 16 7 H 0.07 1.95 8.02 -52.49 -0.42 1.53 16 8 C -0.02 -0.59 4.96 -17.43 -0.09 -0.68 16 9 N -0.91 -27.90 12.86 55.49 0.71 -27.18 16 10 Si 1.06 26.18 30.03 -169.99 -5.10 21.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.14 3.36 5.03 -2.53 -0.01 3.35 16 15 C 0.13 2.34 2.77 -65.78 -0.18 2.16 16 16 H 0.09 1.86 7.63 -51.93 -0.40 1.47 16 17 N -0.72 -9.99 5.23 -51.73 -0.27 -10.26 16 18 C 0.51 7.37 7.83 -10.99 -0.09 7.28 16 19 O -0.53 -10.41 15.73 5.56 0.09 -10.32 16 20 C -0.14 -1.20 5.70 -27.88 -0.16 -1.35 16 21 C -0.11 -1.06 4.26 -26.73 -0.11 -1.17 16 22 C -0.17 -1.09 5.26 -26.74 -0.14 -1.24 16 23 C 0.45 4.14 3.16 37.15 0.12 4.26 16 24 F -0.18 -2.02 16.80 2.25 0.04 -1.98 16 25 F -0.19 -1.76 17.32 2.25 0.04 -1.72 16 26 F -0.18 -1.93 16.80 2.25 0.04 -1.89 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 32 H 0.27 8.23 6.43 -40.82 -0.26 7.97 16 33 H 0.06 1.58 7.81 -51.93 -0.41 1.17 16 34 H 0.02 0.59 7.02 -51.93 -0.36 0.22 16 35 H 0.40 4.10 8.52 -40.82 -0.35 3.75 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.91 7.76 -51.92 -0.40 0.50 16 39 H 0.09 1.02 7.76 -51.93 -0.40 0.62 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -35.02 349.28 -6.53 -41.55 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.00 Total: -0.49 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.77 Total: 1.96 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.12 Total: -53.46 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.10 Total: 21.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.02 -6.53 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208855690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.538 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds