Wall clock time and date at job start Tue Mar 31 2020 10:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45195 * 109.47811 * 2 1 4 4 C 1.34225 * 117.00597 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99626 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00029 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.46973 * 174.24036 * 6 4 3 8 8 C 1.46899 * 110.99936 * 287.87650 * 7 6 4 9 9 C 1.50696 * 109.47118 * 295.47872 * 8 7 6 10 10 H 1.08000 * 120.00304 * 5.26069 * 9 8 7 11 11 C 1.37881 * 120.00141 * 185.25719 * 9 8 7 12 12 N 1.31515 * 119.99697 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00078 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47030 * 90.00211 * 13 11 9 15 15 H 1.48501 * 109.47023 * 210.00059 * 13 11 9 16 16 H 1.48503 * 109.47282 * 330.00517 * 13 11 9 17 17 C 1.46902 * 111.00218 * 163.92471 * 7 6 4 18 18 C 1.50695 * 109.47388 * 190.00152 * 17 7 6 19 19 C 1.38834 * 120.75771 * 270.28443 * 18 17 7 20 20 C 1.38043 * 119.29296 * 180.27883 * 19 18 17 21 21 N 1.31974 * 120.83182 * 359.70651 * 20 19 18 22 22 C 1.32246 * 121.64606 * 0.02562 * 21 20 19 23 23 O 1.35678 * 119.68322 * 180.02562 * 22 21 20 24 24 C 1.42908 * 116.99746 * 359.97438 * 23 22 21 25 25 C 1.38377 * 120.76075 * 89.99676 * 18 17 7 26 26 H 1.08999 * 109.47425 * 300.00572 * 1 2 3 27 27 H 1.08998 * 109.46856 * 60.00270 * 1 2 3 28 28 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47425 * 239.99428 * 2 1 3 30 30 H 1.09007 * 109.46976 * 119.99472 * 2 1 3 31 31 H 1.08999 * 109.47352 * 54.23922 * 6 4 3 32 32 H 1.09001 * 109.47157 * 294.23782 * 6 4 3 33 33 H 1.08997 * 109.46989 * 55.48349 * 8 7 6 34 34 H 1.09004 * 109.47345 * 175.48374 * 8 7 6 35 35 H 0.97001 * 119.99640 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.47132 * 69.99360 * 17 7 6 37 37 H 1.08999 * 109.46735 * 309.99939 * 17 7 6 38 38 H 1.08005 * 120.35261 * 0.03078 * 19 18 17 39 39 H 1.07994 * 119.58714 * 179.72560 * 20 19 18 40 40 H 1.08999 * 109.47183 * 60.00378 * 24 23 22 41 41 H 1.09002 * 109.46832 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.46777 * 300.00244 * 24 23 22 43 43 H 1.07996 * 120.44496 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9208 2.9372 0.0012 7 7 5.3813 2.8629 0.1407 8 6 5.7604 2.4658 1.5032 9 6 5.3290 3.5330 2.4758 10 1 4.7495 4.3763 2.1302 11 6 5.6739 3.4327 3.8070 12 7 6.3799 2.4060 4.2278 13 14 5.1397 4.7559 5.0125 14 1 3.8167 4.3991 5.5849 15 1 6.1393 4.8626 6.1055 16 1 5.0382 6.0579 4.3056 17 6 6.0112 4.1370 -0.2308 18 6 7.5047 3.9538 -0.3134 19 6 8.3067 4.1492 0.8029 20 6 9.6721 3.9788 0.6917 21 7 10.2186 3.6283 -0.4572 22 6 9.4876 3.4279 -1.5409 23 8 10.0911 3.0679 -2.7015 24 6 11.5129 2.9259 -2.6764 25 6 8.1074 3.5812 -1.5019 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5045 3.5023 0.8351 32 1 3.6702 3.4345 -0.9359 33 1 5.2725 1.5246 1.7564 34 1 6.8419 2.3406 1.5575 35 1 6.6223 2.3353 5.1644 36 1 5.7785 4.8904 0.5217 37 1 5.6309 4.4614 -1.1994 38 1 7.8675 4.4355 1.7472 39 1 10.3009 4.1339 1.5559 40 1 11.7887 2.1589 -1.9527 41 1 11.8666 2.6362 -3.6659 42 1 11.9678 3.8746 -2.3916 43 1 7.5133 3.4160 -2.3885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209643586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:21 Heat of formation + Delta-G solvation = -79.085521 kcal Electronic energy + Delta-G solvation = -25702.819555 eV Core-core repulsion = 21942.126086 eV Total energy + Delta-G solvation = -3760.693469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23865 -39.88714 -37.90451 -36.82366 -35.69078 -32.79548 -32.22603 -31.53678 -30.26489 -28.04198 -27.56369 -26.66502 -24.61583 -23.21005 -22.88638 -22.00983 -20.76498 -19.74852 -17.71492 -17.07042 -16.72760 -16.42445 -16.24719 -15.71044 -15.54548 -15.30606 -14.92371 -14.65258 -14.25086 -13.96764 -13.87187 -13.43019 -13.12723 -12.90451 -12.72731 -12.42001 -12.17447 -11.96326 -11.78653 -11.45554 -11.39832 -11.29171 -11.04488 -10.99152 -10.92753 -10.82050 -10.49004 -10.20126 -10.11167 -9.80310 -9.71112 -9.19766 -9.11889 -8.51613 -8.01780 -7.38582 -6.11161 -4.22344 1.64174 1.77500 2.86356 3.05813 3.20520 3.28936 3.29475 3.39644 4.23356 4.31303 4.73325 4.96448 5.04252 5.08456 5.18827 5.25270 5.31675 5.40910 5.41184 5.43276 5.44678 5.61631 5.66567 5.72377 5.79526 5.82650 5.86092 6.01400 6.03857 6.08382 6.14267 6.39365 6.50725 6.87312 6.90473 6.99038 7.09450 7.46710 7.60966 7.78986 7.84955 8.03817 8.15048 8.28690 8.43850 8.87607 9.44340 10.93507 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.004948 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.633992 B = 5657.868285 C = 7918.586154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.523 5.523 8 C 0.181 3.819 9 C -0.559 4.559 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.884 3.116 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.098 3.902 18 C 0.015 3.985 19 C -0.171 4.171 20 C 0.124 3.876 21 N -0.547 5.547 22 C 0.301 3.699 23 O -0.314 6.314 24 C 0.044 3.956 25 C -0.173 4.173 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 2.017 -10.290 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.061 4.061 7 N -0.248 5.248 8 C 0.056 3.944 9 C -0.598 4.598 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.519 5.519 13 Si 0.712 3.288 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.029 4.029 18 C 0.006 3.994 19 C -0.191 4.191 20 C -0.030 4.030 21 N -0.271 5.271 22 C 0.123 3.877 23 O -0.222 6.222 24 C -0.052 4.052 25 C -0.194 4.194 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.718 1.064 -10.766 10.842 hybrid contribution -1.134 1.050 1.702 2.298 sum -1.852 2.114 -9.064 9.490 Atomic orbital electron populations 1.21780 0.93159 1.02498 1.03286 1.22882 0.94833 0.81102 1.02358 1.86473 1.25544 1.31625 1.84973 1.23770 0.79797 0.93248 0.72511 1.90643 1.60021 1.42893 1.43565 1.21416 0.91227 0.89909 1.03528 1.62247 1.03969 1.27591 1.30993 1.19957 0.98174 0.95987 0.80327 1.21673 1.35695 1.08553 0.93891 0.92390 1.24918 0.94715 0.95449 0.98216 1.69962 1.36948 1.28985 1.15967 0.86721 0.78602 0.82254 0.81229 1.20643 1.21077 1.19791 1.20906 0.88989 0.92622 1.00419 1.19923 0.95980 0.91920 0.91543 1.22222 0.94099 1.02441 1.00357 1.22285 0.93251 0.94080 0.93367 1.67198 1.40902 1.18973 1.00033 1.19711 0.89386 0.93534 0.85117 1.86199 1.23078 1.83543 1.29395 1.22736 0.78343 1.01846 1.02253 1.20849 0.91653 1.06800 1.00088 0.91538 0.91755 0.90675 0.91690 0.91415 0.89343 0.88567 0.94617 0.93638 0.92660 0.91469 0.91283 0.83135 0.82873 0.92584 0.89270 0.92729 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.17 10.22 -39.25 -0.40 -6.57 16 4 C 0.47 9.00 7.54 36.00 0.27 9.27 16 5 O -0.49 -11.02 14.90 -18.75 -0.28 -11.30 16 6 C 0.07 1.23 5.42 -4.98 -0.03 1.20 16 7 N -0.52 -10.69 4.29 -238.97 -1.03 -11.71 16 8 C 0.18 4.47 4.43 -4.98 -0.02 4.45 16 9 C -0.56 -13.97 6.85 -34.44 -0.24 -14.20 16 10 H 0.06 1.39 5.97 -52.49 -0.31 1.08 16 11 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 12 N -0.88 -24.72 13.29 55.43 0.74 -23.98 16 13 Si 0.88 20.04 29.54 -169.99 -5.02 15.02 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 C 0.10 1.72 4.94 -4.98 -0.02 1.70 16 18 C 0.01 0.26 4.90 -104.35 -0.51 -0.25 16 19 C -0.17 -3.19 8.11 -39.43 -0.32 -3.51 16 20 C 0.12 2.16 11.18 -17.56 -0.20 1.97 16 21 N -0.55 -9.71 9.22 -13.33 -0.12 -9.83 16 22 C 0.30 5.31 7.49 -17.12 -0.13 5.18 16 23 O -0.31 -5.01 10.48 -18.74 -0.20 -5.21 16 24 C 0.04 0.54 10.38 101.05 1.05 1.59 16 25 C -0.17 -3.00 9.75 -39.28 -0.38 -3.38 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.09 1.64 6.40 -51.93 -0.33 1.31 16 32 H 0.10 1.37 7.81 -51.93 -0.41 0.96 16 33 H 0.04 1.01 6.58 -51.93 -0.34 0.67 16 34 H 0.05 1.23 6.21 -51.93 -0.32 0.91 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 36 H 0.07 1.23 6.32 -51.93 -0.33 0.90 16 37 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 38 H 0.15 3.04 7.57 -52.48 -0.40 2.64 16 39 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -31.18 360.31 -7.10 -38.28 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.20 Total: 4.14 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.01 Total: 5.73 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.41 Total: -45.53 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.88 Total: -23.07 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.18 -7.10 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209643586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.808 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds