Wall clock time and date at job start Tue Mar 31 2020 09:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47606 * 2 1 4 4 C 1.50703 * 109.47038 * 239.99793 * 2 1 3 5 5 O 1.21285 * 120.00148 * 240.00396 * 4 2 1 6 6 N 1.34774 * 119.99735 * 60.00088 * 4 2 1 7 7 C 1.46504 * 119.99618 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.46891 * 35.00590 * 7 6 4 9 9 C 1.52997 * 109.47417 * 275.00242 * 7 6 4 10 10 C 1.53002 * 109.46978 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46891 * 60.00410 * 10 9 7 12 12 C 1.53000 * 109.47328 * 299.99597 * 11 10 9 13 13 C 1.52997 * 109.47060 * 60.00126 * 12 11 10 14 14 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 15 15 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 16 16 C 1.36930 * 119.99841 * 275.00145 * 15 13 12 17 17 H 1.07999 * 120.00622 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99916 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99831 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00233 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47156 * 90.00281 * 20 18 16 22 22 H 1.48502 * 109.47158 * 210.00109 * 20 18 16 23 23 H 1.48496 * 109.47022 * 329.99784 * 20 18 16 24 24 C 1.53002 * 109.47094 * 119.99995 * 2 1 3 25 25 F 1.39898 * 109.47421 * 179.97438 * 24 2 1 26 26 F 1.39906 * 109.47203 * 300.00054 * 24 2 1 27 27 F 1.39902 * 109.47124 * 59.99427 * 24 2 1 28 28 H 1.08995 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47112 * 300.00235 * 1 2 3 30 30 H 1.09002 * 109.46853 * 59.99485 * 1 2 3 31 31 H 0.96997 * 120.00234 * 0.02562 * 6 4 2 32 32 H 1.09002 * 109.47045 * 60.00127 * 9 7 6 33 33 H 1.09001 * 109.47375 * 300.00052 * 9 7 6 34 34 H 1.08992 * 109.47056 * 300.00064 * 10 9 7 35 35 H 1.09004 * 109.47006 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47368 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 38 38 H 1.09002 * 109.47398 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47194 * 300.00476 * 12 11 10 40 40 H 0.97001 * 119.99547 * 95.00125 * 15 13 12 41 41 H 0.97006 * 120.00314 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 1 2.2324 -2.0132 -3.4614 9 6 3.5979 -0.4345 -3.9943 10 6 4.1086 -1.1560 -5.2431 11 6 3.1648 -0.8775 -6.4147 12 6 1.7623 -1.3834 -6.0712 13 6 1.2516 -0.6620 -4.8223 14 1 1.2146 0.4108 -5.0119 15 7 -0.0911 -1.1467 -4.4930 16 6 -1.1867 -0.5937 -5.1002 17 1 -1.0611 0.2001 -5.8217 18 6 -2.4589 -1.0534 -4.7885 19 7 -2.6120 -2.0204 -3.9089 20 14 -3.9535 -0.2995 -5.6174 21 1 -4.2586 -1.0477 -6.8634 22 1 -5.1181 -0.3719 -4.6989 23 1 -3.6721 1.1204 -5.9489 24 6 2.0400 -0.7213 1.2493 25 9 3.4390 -0.7218 1.2490 26 9 1.5736 -0.0618 2.3916 27 9 1.5735 -2.0402 1.2493 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.1494 0.5389 -2.5436 32 1 4.2704 -0.6332 -3.1598 33 1 3.5610 0.6383 -4.1836 34 1 4.1456 -2.2286 -5.0534 35 1 5.1079 -0.7959 -5.4877 36 1 3.5287 -1.3911 -7.3046 37 1 3.1278 0.1952 -6.6044 38 1 1.0900 -1.1854 -6.9060 39 1 1.7993 -2.4561 -5.8814 40 1 -0.2038 -1.8594 -3.8447 41 1 -3.5011 -2.3415 -3.6908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228028497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:30 Heat of formation + Delta-G solvation = -202.724900 kcal Electronic energy + Delta-G solvation = -27225.215484 eV Core-core repulsion = 22917.303869 eV Total energy + Delta-G solvation = -4307.911615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.99055 -47.52430 -47.37802 -39.97964 -38.00776 -34.27016 -34.03976 -33.56436 -31.19903 -29.30690 -27.72760 -26.36621 -23.91035 -23.67295 -21.86425 -21.13225 -20.20662 -19.58662 -18.56823 -18.34328 -17.65013 -17.07692 -16.46614 -15.84398 -15.26249 -14.86106 -14.43500 -14.25628 -14.13033 -13.89572 -13.79437 -13.73535 -13.62874 -13.55329 -13.54585 -13.07754 -12.99785 -12.69369 -12.46023 -12.20240 -12.14849 -11.87830 -11.36402 -11.13760 -10.97021 -10.89809 -10.80549 -10.62294 -10.37390 -10.22052 -9.85431 -9.71683 -9.64229 -8.98375 -8.72167 -7.05346 -5.84013 -3.14178 2.62064 2.70368 3.24427 3.36928 3.42480 3.44467 3.74398 4.09687 4.23971 4.49787 4.78077 4.85858 4.93391 5.01173 5.10403 5.24695 5.45906 5.46706 5.56009 5.66069 5.66552 5.75845 5.83702 5.89882 5.92795 6.07284 6.14007 6.26237 6.40093 6.42153 6.43565 6.53113 6.76053 6.82563 7.00697 7.61747 7.68207 8.32089 8.33739 9.44869 10.00480 10.35966 11.37528 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.005358 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.860891 B = 5224.467800 C = 7184.240203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.161 4.161 3 H 0.134 0.866 4 C 0.523 3.477 5 O -0.531 6.531 6 N -0.697 5.697 7 C 0.141 3.859 8 H 0.086 0.914 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.133 4.133 13 C 0.173 3.827 14 H 0.051 0.949 15 N -0.721 5.721 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.009 4.009 19 N -0.928 5.928 20 Si 0.904 3.096 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C 0.473 3.527 25 F -0.177 7.177 26 F -0.185 7.185 27 F -0.170 7.170 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.405 0.595 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 6.617 5.387 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 H 0.152 0.848 4 C 0.307 3.693 5 O -0.408 6.408 6 N -0.346 5.346 7 C 0.036 3.964 8 H 0.104 0.896 9 C -0.163 4.163 10 C -0.152 4.152 11 C -0.158 4.158 12 C -0.174 4.174 13 C 0.063 3.937 14 H 0.069 0.931 15 N -0.362 5.362 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.418 3.582 25 F -0.158 7.158 26 F -0.166 7.166 27 F -0.151 7.151 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.240 0.760 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.326 5.986 5.409 13.906 hybrid contribution -1.183 0.412 -0.123 1.259 sum 10.143 6.398 5.286 13.105 Atomic orbital electron populations 1.21850 0.88620 1.05458 1.04837 1.22638 1.01838 1.02515 0.91399 0.84835 1.19638 0.80674 0.84639 0.84392 1.90780 1.37931 1.25570 1.86483 1.45748 1.52262 1.31925 1.04667 1.21376 0.92917 0.97758 0.84357 0.89563 1.21877 0.96330 1.00145 0.97998 1.21468 0.98299 1.00674 0.94741 1.21584 0.96066 1.00872 0.97255 1.22219 0.94561 1.00612 1.00009 1.20464 0.85576 0.97095 0.90596 0.93095 1.42416 0.99222 1.44120 1.50467 1.19185 0.85132 1.14620 1.18412 0.91224 1.24728 0.97413 0.98856 0.99558 1.69668 1.21920 1.29954 1.35979 0.86253 0.83065 0.78510 0.78673 1.21767 1.21840 1.20827 1.19826 0.75711 0.78076 0.84581 1.93195 1.29525 1.96400 1.96690 1.93167 1.88609 1.80937 1.53920 1.93219 1.88234 1.37008 1.96635 0.90135 0.90474 0.89010 0.75995 0.91856 0.91961 0.91921 0.92328 0.92651 0.92378 0.91548 0.92419 0.78108 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.85 37.16 0.33 -1.50 16 2 C -0.16 -1.99 2.71 -91.77 -0.25 -2.24 16 3 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.52 8.16 6.89 -10.98 -0.08 8.08 16 5 O -0.53 -10.13 14.50 5.55 0.08 -10.04 16 6 N -0.70 -10.35 4.80 -53.80 -0.26 -10.61 16 7 C 0.14 2.24 1.97 -67.93 -0.13 2.11 16 8 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 9 C -0.12 -1.67 5.49 -26.73 -0.15 -1.81 16 10 C -0.11 -1.42 5.92 -26.73 -0.16 -1.57 16 11 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 12 C -0.13 -2.20 5.50 -26.73 -0.15 -2.35 16 13 C 0.17 3.06 2.29 -67.93 -0.16 2.91 16 14 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 15 N -0.72 -16.29 4.95 -53.43 -0.26 -16.56 16 16 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 17 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 20 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.47 6.61 2.42 37.16 0.09 6.70 16 25 F -0.18 -2.65 16.40 2.25 0.04 -2.62 16 26 F -0.18 -2.34 16.80 2.25 0.04 -2.30 16 27 F -0.17 -2.78 15.88 2.25 0.04 -2.75 16 28 H 0.08 1.16 7.80 -51.93 -0.41 0.76 16 29 H 0.08 0.78 7.80 -51.93 -0.41 0.37 16 30 H 0.09 1.12 7.56 -51.93 -0.39 0.72 16 31 H 0.40 5.48 8.02 -40.82 -0.33 5.15 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -29.63 344.73 -6.50 -36.14 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.01 Total: 11.13 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.05 Total: 1.98 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.20 Total: -52.96 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.11 Total: -7.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.63 -6.50 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228028497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.590 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds