Wall clock time and date at job start Tue Mar 31 2020 10:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47447 * 2 1 4 4 C 1.34225 * 117.00124 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00177 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00035 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.47103 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47585 * 54.48674 * 7 6 4 9 9 C 1.50700 * 109.47109 * 174.48510 * 7 6 4 10 10 H 1.08005 * 120.00239 * 95.00088 * 9 7 6 11 11 C 1.37871 * 120.00254 * 274.99803 * 9 7 6 12 12 N 1.31512 * 120.00364 * 185.02175 * 11 9 7 13 13 Si 1.86798 * 119.99959 * 5.02569 * 11 9 7 14 14 H 1.48497 * 109.47649 * 84.82371 * 13 11 9 15 15 H 1.48502 * 109.47350 * 204.82852 * 13 11 9 16 16 H 1.48504 * 109.46994 * 324.82227 * 13 11 9 17 17 O 1.42905 * 109.47176 * 294.48221 * 7 6 4 18 18 C 1.35519 * 116.99873 * 149.99929 * 17 7 6 19 19 C 1.39416 * 120.50712 * 180.02562 * 18 17 7 20 20 C 1.38191 * 118.34578 * 179.97438 * 19 18 17 21 21 N 1.32526 * 119.17696 * 359.74533 * 20 19 18 22 22 C 1.31749 * 120.96428 * 0.51348 * 21 20 19 23 23 C 1.50701 * 119.09308 * 179.76004 * 22 21 20 24 24 C 1.53004 * 109.46971 * 299.72597 * 23 22 21 25 25 C 1.52995 * 109.47240 * 59.72233 * 23 22 21 26 26 N 1.31790 * 121.81546 * 359.47242 * 22 21 20 27 27 H 1.08997 * 109.47193 * 59.99100 * 1 2 3 28 28 H 1.08996 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46796 * 299.99909 * 1 2 3 30 30 H 1.09001 * 109.46418 * 240.00475 * 2 1 3 31 31 H 1.08997 * 109.47193 * 120.00900 * 2 1 3 32 32 H 1.08996 * 109.47309 * 59.99616 * 6 4 3 33 33 H 1.09002 * 109.47221 * 299.99943 * 6 4 3 34 34 H 0.97003 * 120.00434 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.83036 * 359.94998 * 19 18 17 36 36 H 1.08006 * 120.41113 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47502 * 179.72650 * 23 22 21 38 38 H 1.09002 * 109.47491 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46964 * 59.99723 * 24 23 22 40 40 H 1.09008 * 109.46739 * 299.99971 * 24 23 22 41 41 H 1.09006 * 109.47558 * 299.99993 * 25 23 22 42 42 H 1.09000 * 109.47510 * 60.00483 * 25 23 22 43 43 H 1.09002 * 109.47499 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8571 -0.0014 8 1 5.7796 2.2426 -0.8386 9 6 6.0243 4.2432 -0.1374 10 1 6.3115 4.7976 0.7439 11 6 6.1845 4.8037 -1.3869 12 7 6.7769 5.9710 -1.5130 13 14 5.5599 3.9050 -2.9006 14 1 4.1207 4.2118 -3.1000 15 1 6.3297 4.3466 -4.0913 16 1 5.7329 2.4419 -2.7142 17 8 5.8963 2.2737 1.2239 18 6 7.0518 1.5668 1.1828 19 6 7.5553 0.9660 2.3357 20 6 8.7368 0.2553 2.2427 21 7 9.3454 0.1644 1.0689 22 6 8.8453 0.7483 -0.0010 23 6 9.5752 0.6220 -1.3134 24 6 10.9766 1.2208 -1.1773 25 6 9.6868 -0.8554 -1.6948 26 7 7.7215 1.4352 0.0437 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 3.5853 3.4689 0.8904 33 1 3.5845 3.4700 -0.8895 34 1 6.8892 6.3655 -2.3920 35 1 7.0353 1.0541 3.2781 36 1 9.1571 -0.2231 3.1150 37 1 9.0253 1.1567 -2.0879 38 1 11.5047 1.1291 -2.1264 39 1 11.5264 0.6861 -0.4027 40 1 10.8971 2.2734 -0.9055 41 1 10.2367 -1.3902 -0.9203 42 1 8.6884 -1.2821 -1.7918 43 1 10.2151 -0.9469 -2.6438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233798280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:23 Heat of formation + Delta-G solvation = -90.212853 kcal Electronic energy + Delta-G solvation = -26257.434834 eV Core-core repulsion = 22496.258847 eV Total energy + Delta-G solvation = -3761.175987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64689 -40.06022 -37.94583 -36.23020 -35.09835 -33.37795 -32.46346 -31.85465 -31.13662 -29.95651 -26.91470 -26.57394 -24.13970 -23.94474 -23.20103 -21.62340 -20.44653 -20.11508 -17.73958 -17.43063 -17.23035 -16.84050 -16.32557 -15.75429 -15.02030 -14.90907 -14.84271 -14.31164 -14.14776 -13.92747 -13.62504 -13.31352 -13.18475 -12.93129 -12.77768 -12.54798 -12.33123 -12.13890 -11.87013 -11.70572 -11.55285 -11.49187 -11.38128 -10.95981 -10.84424 -10.63731 -10.49240 -10.36699 -10.13894 -9.92272 -9.87878 -9.66723 -9.31981 -8.81142 -8.67171 -8.22541 -6.30772 -4.36382 1.49347 1.86285 2.67011 2.99712 3.12844 3.24032 3.29940 3.77577 4.21984 4.32311 4.36203 4.64400 4.92308 4.94774 5.00012 5.14775 5.26440 5.27494 5.38738 5.42665 5.45762 5.62751 5.67876 5.73635 5.85344 5.87193 5.90006 5.94442 5.98855 5.99856 6.07015 6.10524 6.21904 6.32845 6.47775 6.52984 6.71995 6.85988 6.90848 7.30504 7.60093 7.93778 8.17902 8.29631 8.72738 8.78314 9.28605 10.80746 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.005772 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.366617 B = 4849.627500 C = 6112.077565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.365 6.365 4 C 0.454 3.546 5 O -0.506 6.506 6 C -0.113 4.113 7 C 0.192 3.808 8 H 0.073 0.927 9 C -0.535 4.535 10 H 0.084 0.916 11 C 0.092 3.908 12 N -0.879 5.879 13 Si 0.854 3.146 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.252 1.252 17 O -0.295 6.295 18 C 0.404 3.596 19 C -0.270 4.270 20 C 0.164 3.836 21 N -0.554 5.554 22 C 0.358 3.642 23 C -0.029 4.029 24 C -0.137 4.137 25 C -0.136 4.136 26 N -0.549 5.549 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.270 0.730 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -11.777 2.301 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.283 6.283 4 C 0.298 3.702 5 O -0.393 6.393 6 C -0.151 4.151 7 C 0.137 3.863 8 H 0.090 0.910 9 C -0.572 4.572 10 H 0.102 0.898 11 C -0.113 4.113 12 N -0.515 5.515 13 Si 0.680 3.320 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.177 1.177 17 O -0.197 6.197 18 C 0.216 3.784 19 C -0.294 4.294 20 C 0.001 3.999 21 N -0.274 5.274 22 C 0.090 3.910 23 C -0.049 4.049 24 C -0.195 4.195 25 C -0.194 4.194 26 N -0.278 5.278 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.526 -11.899 1.553 12.262 hybrid contribution -0.959 -0.200 -0.124 0.987 sum -3.485 -12.098 1.429 12.671 Atomic orbital electron populations 1.21787 0.93005 1.02544 1.03432 1.22922 0.95068 0.81338 1.02254 1.86567 1.25654 1.31497 1.84548 1.24653 0.79852 0.93957 0.71747 1.90627 1.60246 1.43320 1.45112 1.22323 0.97568 0.89059 1.06137 1.20462 0.87432 0.95261 0.83185 0.90958 1.21066 1.43065 0.97937 0.95128 0.89837 1.24815 0.93496 0.94644 0.98383 1.69866 1.40210 1.16878 1.24506 0.87221 0.79521 0.81949 0.83339 1.19537 1.20419 1.17654 1.86075 1.33413 1.61510 1.38702 1.19936 0.85254 0.84469 0.88718 1.21827 1.01174 1.07007 0.99367 1.22784 0.89828 0.91901 0.95369 1.68076 1.35464 1.24479 0.99418 1.22720 0.87328 0.86618 0.94317 1.19934 0.95872 0.97952 0.91160 1.21752 0.94643 1.01121 1.02005 1.21754 1.01857 0.94415 1.01422 1.68026 1.10141 1.21162 1.28503 0.91580 0.90634 0.91534 0.91666 0.91567 0.87065 0.86950 0.92030 0.84003 0.81867 0.88787 0.92088 0.91663 0.92468 0.91574 0.92994 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -6.20 10.22 -39.25 -0.40 -6.60 16 4 C 0.45 9.05 7.84 36.01 0.28 9.34 16 5 O -0.51 -11.27 15.18 -23.93 -0.36 -11.64 16 6 C -0.11 -2.34 5.26 -27.88 -0.15 -2.49 16 7 C 0.19 4.65 1.00 -27.89 -0.03 4.62 16 8 H 0.07 1.89 4.40 -51.93 -0.23 1.66 16 9 C -0.53 -14.62 9.21 -34.44 -0.32 -14.94 16 10 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 11 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 12 N -0.88 -25.61 13.96 55.43 0.77 -24.84 16 13 Si 0.85 20.46 25.89 -169.99 -4.40 16.06 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.25 -6.10 6.14 56.52 0.35 -5.75 16 17 O -0.29 -6.96 9.03 -32.17 -0.29 -7.25 16 18 C 0.40 9.05 7.49 -16.70 -0.13 8.92 16 19 C -0.27 -4.88 10.13 -39.16 -0.40 -5.28 16 20 C 0.16 2.61 11.29 -17.27 -0.19 2.42 16 21 N -0.55 -9.89 9.80 -10.79 -0.11 -10.00 16 22 C 0.36 7.08 6.34 -157.24 -1.00 6.08 16 23 C -0.03 -0.48 3.25 -91.77 -0.30 -0.78 16 24 C -0.14 -1.99 9.09 37.16 0.34 -1.65 16 25 C -0.14 -1.89 9.08 37.16 0.34 -1.55 16 26 N -0.55 -12.63 8.68 -10.78 -0.09 -12.72 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.11 2.10 8.14 -51.93 -0.42 1.67 16 33 H 0.11 2.26 6.40 -51.93 -0.33 1.93 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 40 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -32.50 363.86 -6.93 -39.43 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.50 Total: 5.00 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.03 Total: 7.07 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.57 Total: -47.56 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.05 Total: -25.48 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.40 Total: 16.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.50 -6.93 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233798280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.786 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds