Wall clock time and date at job start Tue Mar 31 2020 10:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.46852 * 2 1 4 4 C 1.34229 * 117.00255 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99962 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00152 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.46919 * 175.91059 * 6 4 3 8 8 C 1.46904 * 110.99903 * 287.64008 * 7 6 4 9 9 C 1.50703 * 109.46988 * 298.79741 * 8 7 6 10 10 H 1.07995 * 120.00067 * 2.54027 * 9 8 7 11 11 C 1.37883 * 119.99974 * 182.53179 * 9 8 7 12 12 N 1.31519 * 119.99710 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46885 * 0.02562 * 13 11 9 15 15 H 1.48490 * 109.46974 * 120.00312 * 13 11 9 16 16 H 1.48500 * 109.46904 * 240.00263 * 13 11 9 17 17 C 1.46900 * 111.00211 * 163.68911 * 7 6 4 18 18 C 1.50703 * 109.47341 * 197.88380 * 17 7 6 19 19 C 1.35348 * 119.64922 * 247.04346 * 18 17 7 20 20 C 1.40190 * 119.94935 * 180.02562 * 19 18 17 21 21 C 1.36410 * 119.26240 * 359.74058 * 20 19 18 22 22 C 1.40532 * 119.30318 * 0.50506 * 21 20 19 23 23 O 1.22067 * 119.98132 * 179.76344 * 22 21 20 24 24 N 1.34656 * 120.02845 * 359.49661 * 22 21 20 25 25 C 1.46505 * 119.62214 * 180.27653 * 24 22 21 26 26 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47641 * 299.99491 * 1 2 3 28 28 H 1.08996 * 109.47551 * 60.00145 * 1 2 3 29 29 H 1.08998 * 109.47641 * 240.00509 * 2 1 3 30 30 H 1.08996 * 109.47551 * 119.99855 * 2 1 3 31 31 H 1.08994 * 109.47566 * 55.90868 * 6 4 3 32 32 H 1.08998 * 109.46927 * 295.90428 * 6 4 3 33 33 H 1.08999 * 109.46841 * 58.79910 * 8 7 6 34 34 H 1.09003 * 109.47248 * 178.80156 * 8 7 6 35 35 H 0.97001 * 119.99822 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.47252 * 77.88233 * 17 7 6 37 37 H 1.08998 * 109.47046 * 317.88345 * 17 7 6 38 38 H 1.08007 * 120.02408 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.37019 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.34684 * 180.25239 * 21 20 19 41 41 H 1.08997 * 109.47036 * 356.31651 * 25 24 22 42 42 H 1.08998 * 109.47353 * 116.32058 * 25 24 22 43 43 H 1.09007 * 109.46495 * 236.31956 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0012 7 7 5.3842 2.8621 0.1004 8 6 5.8000 2.4553 1.4494 9 6 5.3241 3.4760 2.4509 10 1 4.7333 4.3187 2.1238 11 6 5.6429 3.3337 3.7848 12 7 6.3626 2.3075 4.1830 13 14 5.0524 4.5984 5.0262 14 1 4.2661 5.6473 4.3284 15 1 4.1976 3.9332 6.0420 16 1 6.2236 5.2197 5.6951 17 6 6.0042 4.1386 -0.2790 18 6 7.4615 3.9160 -0.5916 19 6 8.4084 4.4503 0.2144 20 6 9.7660 4.2477 -0.0708 21 6 10.1147 3.5055 -1.1608 22 6 9.1059 2.9697 -1.9795 23 8 9.4041 2.3073 -2.9605 24 7 7.8106 3.1822 -1.6791 25 6 6.7662 2.6143 -2.5353 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.5268 3.4933 0.8522 32 1 3.6448 3.4452 -0.9232 33 1 5.3657 1.4840 1.6860 34 1 6.8872 2.3867 1.4893 35 1 6.5872 2.2076 5.1214 36 1 5.9133 4.8459 0.5453 37 1 5.5010 4.5396 -1.1589 38 1 8.1184 5.0324 1.0768 39 1 10.5272 4.6706 0.5681 40 1 11.1552 3.3349 -1.3946 41 1 7.2267 2.1161 -3.3884 42 1 6.1815 1.8925 -1.9651 43 1 6.1132 3.4121 -2.8895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248808972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:58 Heat of formation + Delta-G solvation = -76.958122 kcal Electronic energy + Delta-G solvation = -26361.871705 eV Core-core repulsion = 22601.270486 eV Total energy + Delta-G solvation = -3760.601218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.00028 -39.99669 -37.59500 -36.39113 -35.56151 -34.17806 -32.62564 -31.68808 -30.49602 -28.05649 -27.28840 -27.05614 -24.78267 -23.22392 -22.43217 -22.22163 -21.03591 -19.90861 -17.48611 -16.92954 -16.82367 -16.73832 -16.33370 -15.80607 -15.62659 -15.37104 -14.93134 -14.55194 -14.24003 -14.15698 -13.59892 -13.50159 -12.96299 -12.80650 -12.66501 -12.50935 -12.28094 -12.24447 -11.87268 -11.61198 -11.46358 -11.33815 -11.19962 -11.19020 -11.02669 -10.81271 -10.60697 -10.26779 -10.22029 -9.88924 -9.77616 -9.63681 -9.53158 -8.56829 -7.61509 -7.46787 -6.17562 -4.29007 1.21339 2.28162 2.76584 2.96343 3.10600 3.16289 3.25576 3.26171 4.03744 4.26493 4.61386 4.94660 4.99330 5.02253 5.07852 5.13624 5.17756 5.24306 5.35370 5.43577 5.49747 5.58906 5.68618 5.76011 5.80817 5.81217 5.87886 5.96099 5.99515 6.10569 6.16287 6.40853 6.55565 6.69078 6.77453 6.86554 6.96407 7.36489 7.51757 7.63203 7.76186 7.87454 8.05119 8.33501 8.43863 8.79595 9.38585 10.88085 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.006025 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.809160 B = 4645.893964 C = 7058.870203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.466 3.534 5 O -0.486 6.486 6 C 0.067 3.933 7 N -0.527 5.527 8 C 0.184 3.816 9 C -0.563 4.563 10 H 0.060 0.940 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.887 3.113 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.085 3.915 18 C 0.194 3.806 19 C -0.224 4.224 20 C -0.006 4.006 21 C -0.266 4.266 22 C 0.511 3.489 23 O -0.575 6.575 24 N -0.478 5.478 25 C 0.056 3.944 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 3.864 -8.205 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.285 6.285 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.062 4.062 7 N -0.251 5.251 8 C 0.059 3.941 9 C -0.602 4.602 10 H 0.078 0.922 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.715 3.285 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.043 4.043 18 C 0.084 3.916 19 C -0.247 4.247 20 C -0.028 4.028 21 C -0.288 4.288 22 C 0.315 3.685 23 O -0.460 6.460 24 N -0.187 5.187 25 C -0.085 4.085 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.165 0.835 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.491 2.620 -9.035 10.893 hybrid contribution -0.488 1.015 1.699 2.038 sum -5.979 3.635 -7.337 10.138 Atomic orbital electron populations 1.21782 0.93115 1.02556 1.03298 1.22894 0.94866 0.80947 1.02411 1.86468 1.25417 1.31746 1.84912 1.23689 0.79905 0.93113 0.72588 1.90655 1.59997 1.42883 1.43568 1.21461 0.90670 0.90243 1.03867 1.62216 1.03953 1.26477 1.32495 1.19943 0.97475 0.96552 0.80156 1.21652 1.35254 1.10118 0.93180 0.92228 1.24928 0.94612 0.95327 0.98429 1.69967 1.36725 1.28601 1.16374 0.86619 0.78698 0.81535 0.81642 1.19711 1.20964 1.20805 1.21209 0.88265 0.93504 1.01340 1.20468 0.96747 0.88824 0.85597 1.20553 0.91644 1.09610 1.02893 1.21407 0.96237 0.91392 0.93730 1.21953 0.99646 1.07400 0.99751 1.17106 0.81822 0.82657 0.86893 1.90884 1.81357 1.43505 1.30272 1.45185 1.08859 1.41904 1.22753 1.22193 0.90211 1.00203 0.95934 0.90633 0.91521 0.91744 0.91646 0.91360 0.88734 0.88591 0.93940 0.94203 0.92638 0.89335 0.90500 0.83486 0.85190 0.84159 0.89188 0.88203 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.75 10.22 -39.25 -0.40 -6.15 16 4 C 0.47 8.32 7.62 36.01 0.27 8.60 16 5 O -0.49 -10.30 14.80 -18.75 -0.28 -10.58 16 6 C 0.07 1.07 5.41 -4.98 -0.03 1.05 16 7 N -0.53 -9.64 2.83 -238.96 -0.68 -10.32 16 8 C 0.18 4.32 4.72 -4.97 -0.02 4.30 16 9 C -0.56 -13.59 7.21 -34.44 -0.25 -13.84 16 10 H 0.06 1.35 6.04 -52.49 -0.32 1.04 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 12 N -0.88 -24.48 13.29 55.43 0.74 -23.75 16 13 Si 0.89 19.65 29.54 -169.99 -5.02 14.63 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 C 0.08 1.31 4.28 -4.97 -0.02 1.29 16 18 C 0.19 3.20 5.42 -81.88 -0.44 2.75 16 19 C -0.22 -3.57 9.52 -39.88 -0.38 -3.95 16 20 C -0.01 -0.08 10.10 -39.51 -0.40 -0.48 16 21 C -0.27 -4.35 9.99 -39.38 -0.39 -4.74 16 22 C 0.51 9.67 7.41 -15.45 -0.11 9.56 16 23 O -0.57 -12.42 16.39 4.86 0.08 -12.34 16 24 N -0.48 -8.21 2.99 -122.54 -0.37 -8.58 16 25 C 0.06 0.85 9.48 59.85 0.57 1.41 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.10 1.62 6.20 -51.93 -0.32 1.29 16 32 H 0.10 1.17 7.69 -51.93 -0.40 0.77 16 33 H 0.04 1.16 6.58 -51.93 -0.34 0.82 16 34 H 0.04 1.05 7.43 -51.93 -0.39 0.66 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.09 1.43 6.09 -51.93 -0.32 1.12 16 37 H 0.08 0.94 6.94 -51.93 -0.36 0.58 16 38 H 0.15 2.27 7.90 -52.48 -0.41 1.85 16 39 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.09 1.40 6.86 -51.93 -0.36 1.05 16 42 H 0.10 1.65 7.03 -51.93 -0.36 1.29 16 43 H 0.07 0.82 7.44 -51.93 -0.39 0.44 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -32.26 355.79 -7.32 -39.58 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.06 Total: 4.44 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.69 Total: 7.71 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.31 Total: -42.64 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.60 Total: -29.08 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.26 -7.32 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248808972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.377 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds