Wall clock time and date at job start Tue Mar 31 2020 09:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47048 * 2 1 4 4 C 1.53001 * 109.46916 * 240.00425 * 2 1 3 5 5 C 1.53001 * 109.47154 * 67.43128 * 4 2 1 6 6 F 1.39897 * 109.47363 * 54.25265 * 5 4 2 7 7 F 1.39905 * 109.47010 * 174.25448 * 5 4 2 8 8 F 1.39901 * 109.46904 * 294.25381 * 5 4 2 9 9 C 1.50697 * 109.46981 * 120.00461 * 2 1 3 10 10 O 1.21280 * 119.99903 * 107.85455 * 9 2 1 11 11 N 1.34775 * 120.00236 * 287.84793 * 9 2 1 12 12 C 1.46498 * 119.99913 * 356.04702 * 11 9 2 13 13 C 1.46502 * 120.00296 * 176.03732 * 11 9 2 14 14 C 1.52997 * 109.46707 * 94.11790 * 13 11 9 15 15 H 1.09005 * 112.78409 * 310.64904 * 14 13 11 16 16 C 1.53496 * 113.46820 * 81.43064 * 14 13 11 17 17 C 1.53495 * 83.34582 * 140.84848 * 16 14 13 18 18 N 1.47062 * 113.46775 * 179.86613 * 14 13 11 19 19 C 1.36939 * 136.05640 * 38.35940 * 18 14 13 20 20 H 1.08001 * 120.00029 * 353.56110 * 19 18 14 21 21 C 1.38820 * 120.00051 * 173.56523 * 19 18 14 22 22 N 1.31617 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99836 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46920 * 90.00174 * 23 21 19 25 25 H 1.48501 * 109.47120 * 209.99681 * 23 21 19 26 26 H 1.48502 * 109.47705 * 330.00180 * 23 21 19 27 27 H 1.08996 * 109.47472 * 298.45535 * 1 2 3 28 28 H 1.09006 * 109.47037 * 58.46346 * 1 2 3 29 29 H 1.09005 * 109.46815 * 178.45703 * 1 2 3 30 30 H 1.08999 * 109.46870 * 187.42733 * 4 2 1 31 31 H 1.09002 * 109.47368 * 307.42550 * 4 2 1 32 32 H 1.09000 * 109.47030 * 273.91924 * 12 11 9 33 33 H 1.09009 * 109.47233 * 33.91273 * 12 11 9 34 34 H 1.08995 * 109.47407 * 153.91605 * 12 11 9 35 35 H 1.09001 * 109.47102 * 334.12344 * 13 11 9 36 36 H 1.08992 * 109.47198 * 214.12111 * 13 11 9 37 37 H 1.09005 * 114.20506 * 27.26013 * 16 14 13 38 38 H 1.09003 * 114.38700 * 254.44684 * 16 14 13 39 39 H 1.08999 * 113.46868 * 219.15604 * 17 16 14 40 40 H 1.08993 * 113.52607 * 88.72226 * 17 16 14 41 41 H 0.97001 * 120.00222 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6880 0.0998 -2.4915 6 9 2.1776 1.4020 -2.3440 7 9 2.2664 -0.4909 -3.6202 8 9 0.2981 0.1389 -2.6462 9 6 2.0323 -0.7105 1.2304 10 8 2.5380 -1.8085 1.1326 11 7 1.9196 -0.1258 2.4394 12 6 1.3887 1.2353 2.5482 13 6 2.3279 -0.8512 3.6450 14 6 3.7746 -0.4926 3.9905 15 1 4.4455 -0.5738 3.1352 16 6 3.9107 0.8343 4.7501 17 6 4.9850 0.0690 5.5350 18 7 4.2752 -1.1732 5.1942 19 6 4.1435 -2.4178 5.7499 20 1 3.4587 -3.1324 5.3176 21 6 4.8900 -2.7609 6.8688 22 7 5.7240 -1.8898 7.3960 23 14 4.7097 -4.4584 7.6272 24 1 5.6839 -5.3869 6.9996 25 1 4.9714 -4.3788 9.0868 26 1 3.3305 -4.9591 7.3982 27 1 -0.3634 0.4896 0.9035 28 1 -0.3633 0.5375 -0.8759 29 1 -0.3633 -1.0274 -0.0277 30 1 3.1218 -0.8377 -1.1854 31 1 1.5722 -1.7033 -1.3183 32 1 2.1976 1.9529 2.4112 33 1 0.6303 1.3919 1.7810 34 1 0.9430 1.3738 3.5332 35 1 2.2523 -1.9239 3.4666 36 1 1.6769 -0.5739 4.4739 37 1 3.0340 1.1041 5.3390 38 1 4.2973 1.6585 4.1506 39 1 4.9835 0.2909 6.6022 40 1 5.9785 0.1368 5.0921 41 1 6.2453 -2.1294 8.1781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316601165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:40 Heat of formation + Delta-G solvation = -130.976044 kcal Electronic energy + Delta-G solvation = -26443.240386 eV Core-core repulsion = 22138.440035 eV Total energy + Delta-G solvation = -4304.800351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.40429 -47.90012 -47.84573 -40.19672 -38.12013 -35.33864 -35.14627 -32.17107 -29.78035 -28.26524 -27.90007 -26.60964 -24.80410 -23.46006 -23.06646 -21.54202 -19.39726 -19.20026 -18.83648 -18.43805 -17.83266 -16.81479 -16.34886 -16.10240 -15.57051 -15.13410 -14.84392 -14.74247 -14.46268 -14.34108 -14.13484 -14.05309 -13.97271 -13.62918 -13.48711 -13.16093 -12.83845 -12.64861 -12.50044 -12.33086 -11.91727 -11.84400 -11.55446 -11.50760 -11.39252 -11.10689 -10.88123 -10.75264 -10.44237 -9.86395 -9.84123 -9.68537 -9.40375 -8.78179 -8.35167 -6.85786 -5.75730 -3.07532 2.45113 2.64221 3.03985 3.41201 3.46382 3.47697 3.58061 3.72914 3.80801 4.30653 4.48259 4.54278 4.58373 4.88188 5.00302 5.20018 5.22239 5.29834 5.37575 5.42890 5.47269 5.52604 5.57948 5.66024 5.79948 5.91776 5.95577 6.16183 6.27643 6.42381 6.53118 6.67291 6.84951 7.24429 7.40373 7.48938 7.57799 7.99608 8.22698 9.06112 9.72473 10.66623 11.42553 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.003086 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.309974 B = 9072.253327 C = 9429.406124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.114 4.114 3 H 0.107 0.893 4 C -0.149 4.149 5 C 0.454 3.546 6 F -0.183 7.183 7 F -0.183 7.183 8 F -0.181 7.181 9 C 0.518 3.482 10 O -0.534 6.534 11 N -0.604 5.604 12 C 0.069 3.931 13 C 0.115 3.885 14 C 0.133 3.867 15 H 0.042 0.958 16 C -0.167 4.167 17 C 0.158 3.842 18 N -0.600 5.600 19 C -0.217 4.217 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 9.729 -17.260 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.135 4.135 3 H 0.125 0.875 4 C -0.187 4.187 5 C 0.400 3.600 6 F -0.165 7.165 7 F -0.165 7.165 8 F -0.162 7.162 9 C 0.305 3.695 10 O -0.410 6.410 11 N -0.337 5.337 12 C -0.074 4.074 13 C -0.008 4.008 14 C 0.024 3.976 15 H 0.060 0.940 16 C -0.205 4.205 17 C 0.033 3.967 18 N -0.326 5.326 19 C -0.344 4.344 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.492 8.880 -17.048 22.395 hybrid contribution 0.163 -0.735 0.216 0.784 sum -11.329 8.145 -16.832 21.863 Atomic orbital electron populations 1.22241 0.91844 1.03975 1.04162 1.21265 0.98635 1.01284 0.92345 0.87507 1.22719 1.06617 1.00184 0.89224 1.20608 0.74338 0.78966 0.86114 1.93180 1.87718 1.39835 1.95754 1.93198 1.84433 1.83744 1.55101 1.93121 1.30592 1.96474 1.96048 1.20146 0.79037 0.86110 0.84239 1.90751 1.43831 1.20627 1.85801 1.47795 1.63120 1.15992 1.06789 1.22032 0.99046 0.82939 1.03393 1.21909 0.97052 0.97516 0.84291 1.22395 0.92636 0.90970 0.91553 0.94034 1.23717 1.01273 0.95604 0.99940 1.21920 0.92258 0.83637 0.98929 1.45723 1.55697 1.10523 1.20660 1.18938 1.19171 0.88479 1.07859 0.90163 1.24814 0.98342 0.98146 0.99043 1.69844 1.28798 1.33923 1.24110 0.86141 0.77722 0.83764 0.78290 1.21574 1.21667 1.20555 0.90813 0.89957 0.91391 0.86423 0.86302 0.92298 0.90904 0.90533 0.89961 0.90337 0.90632 0.92841 0.91725 0.95742 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 8.34 37.16 0.31 -0.98 16 2 C -0.11 -1.09 1.80 -91.77 -0.17 -1.25 16 3 H 0.11 0.87 6.85 -51.93 -0.36 0.51 16 4 C -0.15 -1.39 4.14 -26.73 -0.11 -1.50 16 5 C 0.45 4.07 3.14 37.16 0.12 4.19 16 6 F -0.18 -1.72 16.44 2.25 0.04 -1.69 16 7 F -0.18 -1.83 17.32 2.25 0.04 -1.79 16 8 F -0.18 -1.60 14.31 2.25 0.03 -1.56 16 9 C 0.52 7.25 6.90 -10.99 -0.08 7.17 16 10 O -0.53 -9.79 15.60 5.56 0.09 -9.71 16 11 N -0.60 -8.20 2.87 -181.58 -0.52 -8.72 16 12 C 0.07 0.63 9.74 59.85 0.58 1.22 16 13 C 0.12 2.03 5.37 -4.04 -0.02 2.01 16 14 C 0.13 2.72 4.31 -72.40 -0.31 2.41 16 15 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.17 -3.03 7.87 -26.22 -0.21 -3.23 16 17 C 0.16 3.74 7.26 -8.50 -0.06 3.68 16 18 N -0.60 -15.45 3.64 -177.00 -0.64 -16.10 16 19 C -0.22 -6.14 10.55 -15.06 -0.16 -6.30 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -27.63 11.67 55.49 0.65 -26.98 16 23 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.07 0.51 5.72 -51.93 -0.30 0.21 16 28 H 0.08 0.57 5.61 -51.93 -0.29 0.28 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.12 1.15 8.06 -51.93 -0.42 0.73 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.49 4.46 -51.92 -0.23 0.26 16 34 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 35 H 0.08 1.68 7.36 -51.93 -0.38 1.30 16 36 H 0.08 1.32 7.77 -51.93 -0.40 0.92 16 37 H 0.08 1.29 8.01 -51.93 -0.42 0.87 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.67 7.42 -51.93 -0.39 1.28 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -33.14 341.77 -6.07 -39.21 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.67 Total: -2.37 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.20 Total: 7.12 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.52 Total: -51.80 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.11 Total: -5.04 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.14 -6.07 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316601165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.767 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds