Wall clock time and date at job start Tue Mar 31 2020 09:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47132 * 2 1 4 4 C 1.52997 * 109.47289 * 239.99968 * 2 1 3 5 5 C 1.53005 * 109.47020 * 67.08794 * 4 2 1 6 6 F 1.39887 * 109.47274 * 57.36329 * 5 4 2 7 7 F 1.39904 * 109.47034 * 177.36195 * 5 4 2 8 8 F 1.39897 * 109.46943 * 297.36009 * 5 4 2 9 9 C 1.50700 * 109.47518 * 120.00028 * 2 1 3 10 10 O 1.21278 * 120.00203 * 99.15035 * 9 2 1 11 11 N 1.34780 * 119.99952 * 279.16091 * 9 2 1 12 12 C 1.46507 * 119.99539 * 4.18602 * 11 9 2 13 13 C 1.46500 * 120.00168 * 183.91429 * 11 9 2 14 14 C 1.52995 * 109.46815 * 264.01509 * 13 11 9 15 15 H 1.08995 * 112.96821 * 309.63109 * 14 13 11 16 16 C 1.53950 * 113.76649 * 177.95133 * 14 13 11 17 17 C 1.53941 * 86.29224 * 222.09193 * 16 14 13 18 18 N 1.47584 * 113.77083 * 81.31200 * 14 13 11 19 19 C 1.36936 * 134.48941 * 318.93345 * 18 14 13 20 20 H 1.07998 * 120.00429 * 334.03295 * 19 18 14 21 21 C 1.38814 * 119.99751 * 154.03356 * 19 18 14 22 22 N 1.31624 * 119.99674 * 171.14537 * 21 19 18 23 23 Si 1.86799 * 120.00154 * 351.15373 * 21 19 18 24 24 H 1.48499 * 109.47336 * 88.55417 * 23 21 19 25 25 H 1.48504 * 109.47042 * 208.55402 * 23 21 19 26 26 H 1.48500 * 109.47000 * 328.55068 * 23 21 19 27 27 H 1.08995 * 109.47241 * 294.22823 * 1 2 3 28 28 H 1.08994 * 109.47251 * 54.22971 * 1 2 3 29 29 H 1.09002 * 109.46718 * 174.23080 * 1 2 3 30 30 H 1.09004 * 109.47383 * 187.08279 * 4 2 1 31 31 H 1.08997 * 109.47339 * 307.08742 * 4 2 1 32 32 H 1.09000 * 109.47311 * 273.95230 * 12 11 9 33 33 H 1.08988 * 109.47450 * 33.95893 * 12 11 9 34 34 H 1.09001 * 109.46790 * 153.95895 * 12 11 9 35 35 H 1.08996 * 109.46801 * 24.01548 * 13 11 9 36 36 H 1.09003 * 109.46895 * 144.01834 * 13 11 9 37 37 H 1.08994 * 113.74681 * 336.44175 * 16 14 13 38 38 H 1.09000 * 113.73979 * 107.64413 * 16 14 13 39 39 H 1.09003 * 113.77032 * 137.90756 * 17 16 14 40 40 H 1.09001 * 113.77556 * 269.19865 * 17 16 14 41 41 H 0.97005 * 119.99425 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6805 0.0955 -2.4921 6 9 2.2249 1.3792 -2.3801 7 9 2.1990 -0.5333 -3.6293 8 9 0.2890 0.1870 -2.6035 9 6 2.0324 -0.7104 1.2304 10 8 2.3920 -1.8664 1.1589 11 7 2.0819 -0.0611 2.4105 12 6 1.5622 1.3045 2.5174 13 6 2.6498 -0.7230 3.5876 14 6 1.5237 -1.3439 4.4164 15 1 0.7142 -0.6446 4.6255 16 6 2.0167 -2.1113 5.6566 17 6 0.9712 -3.1794 5.2878 18 7 1.0639 -2.6518 3.9101 19 6 0.8221 -3.1676 2.6649 20 1 0.5596 -2.5099 1.8495 21 6 0.9143 -4.5360 2.4506 22 7 0.5153 -5.0514 1.3071 23 14 1.6045 -5.6459 3.7852 24 1 0.5058 -6.0809 4.6845 25 1 2.2345 -6.8373 3.1614 26 1 2.6220 -4.9021 4.5705 27 1 -0.3633 0.4217 0.9371 28 1 -0.3633 0.6007 -0.8338 29 1 -0.3633 -1.0225 -0.1033 30 1 3.1226 -0.8323 -1.1881 31 1 1.5769 -1.7057 -1.3149 32 1 2.3402 2.0128 2.2325 33 1 0.7051 1.4201 1.8542 34 1 1.2547 1.4968 3.5453 35 1 3.3390 -1.5045 3.2677 36 1 3.1854 0.0085 4.1926 37 1 3.0465 -2.4592 5.5768 38 1 1.8122 -1.6014 6.5981 39 1 1.3324 -4.2024 5.3929 40 1 -0.0014 -3.0217 5.7539 41 1 0.5795 -6.0077 1.1576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316601172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:43 Heat of formation + Delta-G solvation = -114.465274 kcal Electronic energy + Delta-G solvation = -27715.969337 eV Core-core repulsion = 23411.884946 eV Total energy + Delta-G solvation = -4304.084391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.05430 -47.53324 -47.51856 -39.73071 -38.02287 -34.96953 -34.57568 -32.01274 -29.48618 -28.42339 -27.96626 -26.27280 -24.46480 -23.31998 -22.90521 -21.57733 -19.09329 -18.84277 -18.49310 -18.08499 -17.40092 -16.95745 -16.01031 -15.76122 -15.31465 -15.14044 -14.74302 -14.40905 -14.19424 -13.95950 -13.94256 -13.77190 -13.63726 -13.49682 -13.01543 -12.88924 -12.69787 -12.37188 -12.25165 -12.07377 -11.84232 -11.46514 -11.38939 -11.25848 -11.07329 -11.01391 -10.94181 -10.69463 -10.34920 -10.24186 -9.48713 -9.17584 -8.98379 -8.44707 -8.01822 -6.78868 -5.68561 -3.04279 2.83865 3.29140 3.45128 3.45874 3.55352 3.58268 3.97631 4.14524 4.19704 4.69255 4.74568 4.81354 5.03752 5.07798 5.26860 5.35072 5.36709 5.47079 5.54912 5.69636 5.72677 5.78740 5.83549 5.89413 5.92776 5.97225 6.12382 6.15297 6.19839 6.37557 6.47739 6.50932 6.57624 7.00067 7.12444 7.53001 7.93494 8.58179 8.90114 8.98687 9.89514 10.53348 11.49144 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.005220 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.659264 B = 5362.796478 C = 6428.810242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.149 4.149 5 C 0.453 3.547 6 F -0.189 7.189 7 F -0.185 7.185 8 F -0.179 7.179 9 C 0.498 3.502 10 O -0.460 6.460 11 N -0.617 5.617 12 C 0.078 3.922 13 C 0.121 3.879 14 C 0.129 3.871 15 H 0.050 0.950 16 C -0.147 4.147 17 C 0.092 3.908 18 N -0.613 5.613 19 C -0.193 4.193 20 H 0.098 0.902 21 C 0.022 3.978 22 N -0.920 5.920 23 Si 0.888 3.112 24 H -0.294 1.294 25 H -0.307 1.307 26 H -0.271 1.271 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 15.605 -0.619 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.128 4.128 3 H 0.111 0.889 4 C -0.187 4.187 5 C 0.400 3.600 6 F -0.170 7.170 7 F -0.167 7.167 8 F -0.161 7.161 9 C 0.283 3.717 10 O -0.329 6.329 11 N -0.353 5.353 12 C -0.066 4.066 13 C -0.003 4.003 14 C 0.021 3.979 15 H 0.067 0.933 16 C -0.186 4.186 17 C -0.033 4.033 18 N -0.342 5.342 19 C -0.320 4.320 20 H 0.115 0.885 21 C -0.175 4.175 22 N -0.565 5.565 23 Si 0.721 3.279 24 H -0.222 1.222 25 H -0.235 1.235 26 H -0.197 1.197 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.225 14.715 -1.036 15.100 hybrid contribution 0.107 -0.525 0.605 0.808 sum 3.332 14.191 -0.432 14.583 Atomic orbital electron populations 1.22148 0.92018 1.04650 1.02884 1.21178 0.98695 1.00044 0.92837 0.88902 1.22739 1.05871 1.00998 0.89086 1.20696 0.74464 0.78616 0.86271 1.93145 1.85839 1.41834 1.96198 1.93181 1.86775 1.82143 1.54594 1.93128 1.30342 1.96254 1.96351 1.19988 0.80943 0.86921 0.83828 1.90997 1.43750 1.14071 1.84114 1.47550 1.63216 1.14829 1.09667 1.21784 0.98759 0.83298 1.02747 1.21738 0.96342 0.96544 0.85688 1.22713 0.93827 0.90102 0.91221 0.93289 1.23585 0.99942 0.98356 0.96682 1.22974 0.95767 0.97124 0.87407 1.46273 1.77727 1.09631 1.00533 1.18670 1.38105 0.91638 0.83593 0.88470 1.24942 0.99996 0.96834 0.95680 1.69712 1.51493 1.11531 1.23804 0.86861 0.79676 0.79859 0.81480 1.22167 1.23503 1.19709 0.91717 0.90710 0.90516 0.87133 0.85456 0.93426 0.91279 0.91370 0.89152 0.91777 0.90365 0.92481 0.93446 0.94336 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.52 1.83 -91.78 -0.17 -1.68 16 3 H 0.09 1.09 6.78 -51.93 -0.35 0.74 16 4 C -0.15 -2.13 4.19 -26.73 -0.11 -2.24 16 5 C 0.45 5.94 3.15 37.16 0.12 6.06 16 6 F -0.19 -2.35 16.57 2.25 0.04 -2.31 16 7 F -0.19 -2.56 17.32 2.25 0.04 -2.52 16 8 F -0.18 -2.43 14.17 2.25 0.03 -2.39 16 9 C 0.50 9.07 5.63 -10.98 -0.06 9.01 16 10 O -0.46 -10.82 12.09 5.56 0.07 -10.75 16 11 N -0.62 -9.76 2.88 -181.57 -0.52 -10.28 16 12 C 0.08 0.86 9.76 59.85 0.58 1.45 16 13 C 0.12 2.02 5.30 -4.04 -0.02 1.99 16 14 C 0.13 2.39 4.53 -66.86 -0.30 2.09 16 15 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 16 C -0.15 -2.52 7.86 -25.79 -0.20 -2.72 16 17 C 0.09 1.96 7.35 -2.85 -0.02 1.94 16 18 N -0.61 -14.73 3.24 -169.72 -0.55 -15.28 16 19 C -0.19 -5.47 8.46 -15.06 -0.13 -5.60 16 20 H 0.10 2.91 5.71 -52.49 -0.30 2.61 16 21 C 0.02 0.67 5.50 -17.43 -0.10 0.58 16 22 N -0.92 -29.25 13.97 55.49 0.78 -28.47 16 23 Si 0.89 23.76 25.00 -169.99 -4.25 19.51 16 24 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.31 -8.41 7.11 56.52 0.40 -8.01 16 26 H -0.27 -6.94 6.21 56.52 0.35 -6.58 16 27 H 0.06 0.87 6.11 -51.93 -0.32 0.56 16 28 H 0.07 0.93 5.74 -51.93 -0.30 0.63 16 29 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.11 1.51 8.13 -51.93 -0.42 1.09 16 31 H 0.13 2.12 8.09 -51.93 -0.42 1.70 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.73 4.90 -51.94 -0.25 0.47 16 34 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 35 H 0.09 1.82 7.30 -51.93 -0.38 1.44 16 36 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.10 3.42 -51.93 -0.18 0.92 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -34.20 326.86 -5.03 -39.23 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.48 Total: -0.53 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -0.11 Total: 8.89 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.30 Total: -54.04 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.23 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.25 Total: 19.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.20 -5.03 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316601172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.238 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds