Wall clock time and date at job start Tue Mar 31 2020 09:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46943 * 2 1 4 4 O 1.42904 * 109.47086 * 240.00733 * 2 1 3 5 5 C 1.52998 * 109.47309 * 120.00110 * 2 1 3 6 6 C 1.53003 * 109.46990 * 184.99949 * 5 2 1 7 7 C 1.52998 * 109.47049 * 180.02562 * 6 5 2 8 8 N 1.46499 * 109.47380 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00089 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99944 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99799 * 180.02562 * 9 8 7 12 12 C 1.40030 * 119.99945 * 175.49576 * 11 9 8 13 13 C 1.38915 * 120.00051 * 215.12591 * 12 11 9 14 14 C 1.38007 * 120.00044 * 180.02562 * 13 12 11 15 15 C 1.38902 * 119.99859 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99859 * 179.97438 * 15 14 13 17 17 C 1.34812 * 116.99955 * 5.34819 * 16 15 14 18 18 H 1.08007 * 120.00218 * 354.95840 * 17 16 15 19 19 C 1.38628 * 120.00199 * 174.96182 * 17 16 15 20 20 N 1.31576 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47323 * 60.00392 * 21 19 17 23 23 H 1.48505 * 109.47247 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47443 * 300.00221 * 21 19 17 25 25 C 1.38907 * 120.00667 * 0.23850 * 15 14 13 26 26 C 1.38012 * 119.99623 * 359.48578 * 25 15 14 27 27 H 1.09000 * 109.47018 * 299.99788 * 1 2 3 28 28 H 1.09002 * 109.47338 * 59.99491 * 1 2 3 29 29 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 30 30 H 0.96695 * 113.99745 * 59.99468 * 4 2 1 31 31 H 1.08998 * 109.46401 * 65.00209 * 5 2 1 32 32 H 1.08993 * 109.47088 * 305.00376 * 5 2 1 33 33 H 1.08996 * 109.46897 * 60.00540 * 6 5 2 34 34 H 1.09003 * 109.47004 * 300.00075 * 6 5 2 35 35 H 1.09004 * 109.46926 * 59.99698 * 7 6 5 36 36 H 1.09007 * 109.46806 * 300.00446 * 7 6 5 37 37 H 0.96996 * 119.99786 * 0.02562 * 8 7 6 38 38 H 0.97000 * 120.00039 * 355.49040 * 11 9 8 39 39 H 1.08001 * 119.99912 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.99960 * 180.02562 * 14 13 12 41 41 H 0.97003 * 119.99956 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.00196 * 179.72409 * 25 15 14 43 43 H 1.08001 * 120.00318 * 180.23051 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 6 4.0750 -1.3351 2.5624 8 7 5.5350 -1.2312 2.6244 9 6 6.2080 -1.7962 3.6463 10 8 5.6034 -2.3919 4.5169 11 7 7.5511 -1.7002 3.7035 12 6 8.2425 -2.2046 4.8119 13 6 9.3799 -1.5555 5.2754 14 6 10.0615 -2.0529 6.3674 15 6 9.6106 -3.2028 7.0027 16 8 10.2816 -3.6925 8.0768 17 6 11.3102 -2.9565 8.5435 18 1 11.6191 -2.0653 8.0173 19 6 11.9716 -3.3436 9.6987 20 7 11.5951 -4.4291 10.3400 21 14 13.3972 -2.3242 10.3449 22 1 12.9259 -0.9484 10.6454 23 1 13.9290 -2.9462 11.5841 24 1 14.4699 -2.2671 9.3195 25 6 8.4765 -3.8551 6.5360 26 6 7.7915 -3.3545 5.4475 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7210 -0.2699 -1.9979 31 1 1.7517 -1.7715 1.2054 32 1 1.6054 -0.2618 2.1369 33 1 3.8532 0.4370 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 3.7866 -2.3853 2.5183 36 1 3.6404 -0.8759 3.4504 37 1 6.0172 -0.7551 1.9305 38 1 8.0389 -1.2817 2.9770 39 1 9.7311 -0.6621 4.7806 40 1 10.9455 -1.5480 6.7279 41 1 12.0581 -4.7001 11.1482 42 1 8.1285 -4.7517 7.0273 43 1 6.9075 -3.8595 5.0868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322286975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:48 Heat of formation + Delta-G solvation = -90.014671 kcal Electronic energy + Delta-G solvation = -23799.832624 eV Core-core repulsion = 20038.665231 eV Total energy + Delta-G solvation = -3761.167393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.25662 -38.77279 -38.32762 -36.73490 -35.48606 -33.93155 -33.13121 -32.11550 -30.68476 -30.14130 -27.90655 -26.19533 -25.20234 -22.58693 -22.11521 -21.60489 -21.32986 -20.39257 -18.43392 -17.96819 -17.72821 -17.29814 -16.48937 -15.88532 -15.44390 -15.13791 -14.67483 -14.55588 -14.51231 -14.33033 -14.03901 -13.49907 -13.42902 -13.20744 -12.79432 -12.77047 -12.71227 -12.38932 -12.12930 -11.85635 -11.77547 -11.51241 -11.45702 -11.18973 -11.02318 -10.95863 -10.69836 -10.47257 -10.44527 -9.87783 -9.58117 -9.18675 -9.10732 -8.63749 -8.13248 -6.84888 -6.39150 -3.97360 2.22672 2.30981 2.77090 3.15862 3.16873 3.20153 3.39827 3.77599 4.01152 4.18344 4.34897 4.49045 4.59394 4.64708 4.76677 4.90639 5.05188 5.14781 5.19237 5.27608 5.40256 5.42813 5.45594 5.56929 5.61412 5.67551 5.84511 5.87360 5.92268 6.20613 6.27431 6.33089 6.42697 6.75718 6.91277 6.98910 7.17810 7.18449 7.29031 7.32894 7.49377 7.87222 8.05147 8.11854 8.74427 9.06091 9.77580 10.78884 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.049617 B = 0.001845 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.188394 B =15176.474690 C =15385.977941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H 0.055 0.945 4 O -0.567 6.567 5 C -0.111 4.111 6 C -0.128 4.128 7 C 0.138 3.862 8 N -0.749 5.749 9 C 0.698 3.302 10 O -0.576 6.576 11 N -0.676 5.676 12 C 0.054 3.946 13 C -0.093 4.093 14 C -0.220 4.220 15 C 0.145 3.855 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.178 4.178 26 C -0.067 4.067 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.376 0.624 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.270 0.730 42 H 0.120 0.880 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.310 11.327 -21.890 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.042 3.958 3 H 0.073 0.927 4 O -0.372 6.372 5 C -0.149 4.149 6 C -0.166 4.166 7 C 0.014 3.986 8 N -0.406 5.406 9 C 0.399 3.601 10 O -0.453 6.453 11 N -0.323 5.323 12 C -0.039 4.039 13 C -0.113 4.113 14 C -0.240 4.240 15 C 0.092 3.908 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.198 4.198 26 C -0.087 4.087 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.223 0.777 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.227 0.773 38 H 0.231 0.769 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.594 10.056 -20.270 28.060 hybrid contribution 0.874 1.515 -0.814 1.930 sum -15.720 11.571 -21.084 28.732 Atomic orbital electron populations 1.22527 0.96481 1.03009 1.02513 1.21814 0.92663 0.95253 0.86116 0.92709 1.86552 1.77020 1.57715 1.15945 1.21535 0.95204 1.02112 0.96045 1.21742 0.95872 1.00922 0.98027 1.21187 0.78547 1.00975 0.97892 1.45096 1.07674 1.60480 1.27328 1.15973 0.81709 0.80172 0.82277 1.90928 1.67713 1.46889 1.39749 1.42305 1.04654 1.63204 1.22148 1.17053 0.96760 0.96939 0.93130 1.20452 0.95778 0.98374 0.96730 1.20945 1.03766 1.00079 0.99171 1.19415 0.91080 0.91818 0.88529 1.83992 1.41207 1.44631 1.38332 1.21256 1.08154 1.08440 1.08940 0.89181 1.25273 0.99000 0.96915 0.95371 1.70042 1.40015 1.22404 1.17363 0.85792 0.79980 0.79203 0.78486 1.19576 1.20330 1.19564 1.20158 0.96344 1.03043 1.00263 1.20782 0.98907 0.93720 0.95338 0.91431 0.92412 0.91654 0.77695 0.90649 0.90167 0.91532 0.90489 0.91611 0.91697 0.77271 0.76894 0.87268 0.85159 0.92037 0.86166 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.80 9.53 37.16 0.35 -0.45 16 2 C 0.10 0.53 3.58 -26.73 -0.10 0.43 16 3 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 4 O -0.57 -3.54 12.86 -35.23 -0.45 -3.99 16 5 C -0.11 -0.68 4.92 -26.73 -0.13 -0.81 16 6 C -0.13 -0.86 5.23 -26.73 -0.14 -1.00 16 7 C 0.14 1.32 5.67 -4.04 -0.02 1.30 16 8 N -0.75 -7.88 5.56 -65.22 -0.36 -8.24 16 9 C 0.70 10.63 8.41 -86.92 -0.73 9.90 16 10 O -0.58 -11.32 13.78 5.29 0.07 -11.24 16 11 N -0.68 -9.73 5.35 -14.18 -0.08 -9.81 16 12 C 0.05 1.00 6.30 -83.61 -0.53 0.48 16 13 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 14 C -0.22 -4.83 9.16 -39.42 -0.36 -5.19 16 15 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 16 O -0.18 -5.20 9.76 0.00 0.00 -5.20 16 17 C -0.39 -11.08 9.48 30.88 0.29 -10.79 16 18 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 21 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.18 -4.07 9.99 -39.42 -0.39 -4.46 16 26 C -0.07 -1.39 8.69 -39.41 -0.34 -1.74 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.38 0.89 9.08 45.56 0.41 1.30 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 2.88 8.49 -40.82 -0.35 2.53 16 38 H 0.40 4.13 8.84 -40.82 -0.36 3.77 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 43 H 0.13 2.68 6.23 -52.49 -0.33 2.35 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -35.68 363.89 -7.83 -43.50 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.38 Total: 8.82 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.85 Total: -10.08 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.32 Total: -42.98 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.38 Total: -20.43 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.68 -7.83 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322286975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.513 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds