Wall clock time and date at job start Tue Mar 31 2020 10:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47264 * 2 1 4 4 C 1.34970 * 117.00099 * 179.97438 * 3 2 1 5 5 O 1.21700 * 120.00207 * 359.97438 * 4 3 2 6 6 C 1.41554 * 119.99876 * 180.02562 * 4 3 2 7 7 N 1.38277 * 126.36068 * 0.25968 * 6 4 3 8 8 H 0.96998 * 125.65057 * 0.04243 * 7 6 4 9 9 C 1.35610 * 108.69005 * 180.20199 * 7 6 4 10 10 C 1.35231 * 109.16567 * 359.56861 * 9 7 6 11 11 C 1.38824 * 126.35548 * 179.97438 * 6 4 3 12 12 N 1.39452 * 126.55900 * 359.97438 * 11 6 4 13 13 C 1.34776 * 120.00237 * 179.97438 * 12 11 6 14 14 O 1.21281 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00285 * 180.02562 * 13 12 11 16 16 C 1.52994 * 109.47133 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46907 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47369 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47595 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99657 * 359.97438 * 19 18 17 21 21 C 1.37869 * 119.99925 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00609 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99724 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47080 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47225 * 119.99710 * 23 21 19 26 26 H 1.48497 * 109.46903 * 239.99716 * 23 21 19 27 27 H 1.09004 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47656 * 300.00026 * 1 2 3 29 29 H 1.09004 * 109.47078 * 60.00230 * 1 2 3 30 30 H 1.09002 * 109.47157 * 239.99844 * 2 1 3 31 31 H 1.08995 * 109.47226 * 120.00052 * 2 1 3 32 32 H 1.08002 * 125.42024 * 179.83919 * 9 7 6 33 33 H 1.07999 * 126.01712 * 180.26309 * 10 9 7 34 34 H 0.97003 * 119.99873 * 0.02562 * 12 11 6 35 35 H 1.09001 * 109.47031 * 300.00280 * 15 13 12 36 36 H 1.09000 * 109.47362 * 59.99625 * 15 13 12 37 37 H 1.08996 * 109.47104 * 299.99451 * 16 15 13 38 38 H 1.08995 * 109.47489 * 59.99910 * 16 15 13 39 39 H 1.09008 * 109.47295 * 299.99210 * 17 16 15 40 40 H 1.08998 * 109.47888 * 59.99766 * 17 16 15 41 41 H 1.09001 * 109.46924 * 299.99986 * 18 17 16 42 42 H 1.09000 * 109.47308 * 59.99233 * 18 17 16 43 43 H 0.96997 * 120.00050 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5241 0.0005 5 8 4.0857 0.5590 0.0015 6 6 3.8854 2.8322 0.0011 7 7 3.1697 4.0153 0.0063 8 1 2.2027 4.0911 0.0107 9 6 4.0439 5.0520 0.0005 10 6 5.3066 4.5680 0.0014 11 6 5.2331 3.1653 0.0022 12 7 6.3082 2.2772 0.0034 13 6 7.5711 2.7480 0.0039 14 8 7.7726 3.9439 0.0037 15 6 8.7331 1.7882 0.0046 16 6 10.0448 2.5756 0.0057 17 6 11.2244 1.6012 0.0058 18 6 12.5363 2.3885 0.0062 19 6 13.6983 1.4288 0.0069 20 1 13.5189 0.3638 0.0075 21 6 14.9901 1.9104 0.0079 22 7 15.2085 3.2073 0.0077 23 14 16.4304 0.7207 0.0095 24 1 15.9204 -0.6740 0.0101 25 1 17.2589 0.9447 -1.2023 26 1 17.2568 0.9456 1.2227 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7746 6.0979 0.0001 33 1 6.2123 5.1563 0.0017 34 1 6.1472 1.3207 0.0032 35 1 8.6855 1.1609 0.8947 36 1 8.6864 1.1604 -0.8852 37 1 10.0926 3.2032 -0.8842 38 1 10.0913 3.2031 0.8957 39 1 11.1770 0.9733 0.8955 40 1 11.1779 0.9740 -0.8845 41 1 12.5836 3.0162 -0.8837 42 1 12.5833 3.0160 0.8962 43 1 16.1174 3.5460 0.0088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325326653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:39 Heat of formation + Delta-G solvation = -103.529204 kcal Electronic energy + Delta-G solvation = -24138.256426 eV Core-core repulsion = 20376.502999 eV Total energy + Delta-G solvation = -3761.753427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95860 -40.36478 -39.53930 -37.07503 -35.13330 -34.66762 -32.63210 -32.28568 -30.80309 -30.01660 -29.14803 -25.78692 -24.61402 -22.97695 -22.59524 -21.63966 -20.64640 -19.96330 -19.78861 -19.14813 -17.44715 -17.09205 -16.84196 -16.19166 -15.96291 -15.82100 -15.35751 -15.00054 -14.43985 -14.16807 -13.95041 -13.92059 -13.76452 -13.36956 -13.16889 -12.70788 -12.58633 -12.41834 -12.29585 -12.05587 -11.68269 -11.57114 -11.10579 -11.01060 -10.96651 -10.90789 -10.51596 -10.45574 -10.38654 -9.78689 -9.57637 -9.20118 -8.94675 -8.84690 -8.27823 -8.10088 -5.92542 -3.94740 0.75360 2.32209 2.36465 2.54182 2.65762 3.14352 3.19190 3.35490 3.42648 3.46899 4.47332 4.48357 4.51398 4.56985 4.65763 4.77181 4.84054 4.97716 5.24583 5.30206 5.31460 5.38245 5.40911 5.43058 5.48161 5.67501 5.87681 6.04615 6.10200 6.16481 6.31526 6.35356 6.57646 6.77162 6.86949 7.03101 7.04844 7.23526 7.40152 7.45660 7.77682 7.93443 8.09074 8.13231 8.51209 9.13223 9.68886 11.18786 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.002062 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.901618 B =13572.646294 C =14597.892572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.543 3.457 5 O -0.520 6.520 6 C -0.112 4.112 7 N -0.533 5.533 8 H 0.426 0.574 9 C 0.069 3.931 10 C -0.224 4.224 11 C 0.199 3.801 12 N -0.648 5.648 13 C 0.514 3.486 14 O -0.509 6.509 15 C -0.137 4.137 16 C -0.103 4.103 17 C -0.111 4.111 18 C 0.019 3.981 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.422 0.578 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.633 -1.173 -0.012 33.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.279 6.279 4 C 0.393 3.607 5 O -0.410 6.410 6 C -0.222 4.222 7 N -0.132 5.132 8 H 0.264 0.736 9 C -0.070 4.070 10 C -0.250 4.250 11 C 0.092 3.908 12 N -0.294 5.294 13 C 0.303 3.697 14 O -0.383 6.383 15 C -0.177 4.177 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.018 4.018 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.198 0.802 33 H 0.193 0.807 34 H 0.261 0.739 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -33.238 -0.630 -0.008 33.244 hybrid contribution 0.244 -1.216 0.002 1.240 sum -32.994 -1.846 -0.007 33.045 Atomic orbital electron populations 1.21817 0.92582 1.03135 1.03362 1.22630 0.95278 0.80431 1.02751 1.86127 1.24101 1.32651 1.85021 1.18302 0.80573 0.88124 0.73710 1.90844 1.59916 1.41357 1.48904 1.17473 0.89981 0.84460 1.30290 1.41738 1.09079 1.04449 1.57969 0.73565 1.22251 0.89086 0.93430 1.02226 1.21427 0.98449 0.91967 1.13159 1.17492 0.84868 0.91055 0.97379 1.43389 1.04178 1.10563 1.71229 1.21372 0.83270 0.90411 0.74672 1.90617 1.84706 1.16521 1.46451 1.21829 0.93012 0.98271 1.04595 1.21471 0.91265 0.98257 1.03111 1.21657 0.95349 0.97656 1.00207 1.19106 0.90043 0.95294 0.97348 1.21328 0.91108 0.93138 1.50159 0.92685 1.25042 0.99028 0.95038 0.95507 1.69984 1.20531 1.11850 1.51108 0.86559 0.82686 0.81368 0.77511 1.19787 1.21076 1.21082 0.90130 0.91552 0.91557 0.91303 0.91303 0.80200 0.80729 0.73941 0.88615 0.88609 0.91619 0.91614 0.93386 0.93385 0.96542 0.96546 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.15 0.38 -0.27 16 2 C 0.06 0.44 6.10 37.15 0.23 0.67 16 3 O -0.36 -3.23 10.09 -41.23 -0.42 -3.64 16 4 C 0.54 6.05 7.72 32.00 0.25 6.30 16 5 O -0.52 -6.75 14.74 -19.42 -0.29 -7.04 16 6 C -0.11 -1.21 6.92 -83.48 -0.58 -1.79 16 7 N -0.53 -3.96 6.10 -10.42 -0.06 -4.02 16 8 H 0.43 1.86 8.96 -40.82 -0.37 1.49 16 9 C 0.07 0.52 11.87 -16.95 -0.20 0.32 16 10 C -0.22 -2.60 9.61 -39.82 -0.38 -2.99 16 11 C 0.20 2.53 6.91 -83.34 -0.58 1.96 16 12 N -0.65 -8.40 5.39 -9.61 -0.05 -8.45 16 13 C 0.51 7.52 7.79 -10.98 -0.09 7.43 16 14 O -0.51 -8.82 13.16 5.56 0.07 -8.75 16 15 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 16 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 17 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 19 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 20 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 23 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.18 2.33 5.97 -52.49 -0.31 2.02 16 34 H 0.42 5.00 6.80 -40.82 -0.28 4.72 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -35.42 367.28 -7.84 -43.25 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.41 Total: 1.27 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.93 Total: -8.33 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.62 Total: -39.37 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.63 Total: -19.43 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.42 -7.84 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325326653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.276 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds