Wall clock time and date at job start Tue Mar 31 2020 10:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42893 * 109.47000 * 2 1 4 4 N 1.41606 * 114.00197 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.99948 * 270.00382 * 4 3 2 6 6 C 1.52995 * 109.46671 * 254.99423 * 5 4 3 7 7 C 1.34776 * 120.00217 * 89.99331 * 4 3 2 8 8 O 1.21586 * 120.00194 * 180.02562 * 7 4 3 9 9 N 1.34783 * 119.99844 * 0.02562 * 7 4 3 10 10 C 1.46500 * 120.00093 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96230 * 269.98024 * 11 10 9 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99825 * 11 10 9 26 26 H 1.09000 * 109.46589 * 300.00279 * 1 2 3 27 27 H 1.09002 * 109.46865 * 60.00025 * 1 2 3 28 28 H 1.08994 * 109.46773 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46964 * 239.99781 * 2 1 3 30 30 H 1.09002 * 109.46865 * 119.99975 * 2 1 3 31 31 H 1.09002 * 109.46633 * 14.98956 * 5 4 3 32 32 H 1.09001 * 109.46888 * 134.99452 * 5 4 3 33 33 H 1.09000 * 109.47200 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47525 * 299.99790 * 6 5 4 35 35 H 1.09009 * 109.47625 * 60.00100 * 6 5 4 36 36 H 0.97004 * 119.99718 * 0.02562 * 9 7 4 37 37 H 1.09002 * 109.46490 * 60.00223 * 10 9 7 38 38 H 1.08992 * 109.46880 * 300.00477 * 10 9 7 39 39 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 40 40 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 41 41 H 1.08006 * 120.03715 * 180.31908 * 14 13 12 42 42 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4180 1.4591 -0.0006 5 6 4.1488 1.5167 1.2679 6 6 4.6154 2.9513 1.5228 7 6 4.0894 1.5124 -1.1680 8 8 5.3014 1.6080 -1.1685 9 7 3.4170 1.4597 -2.3350 10 6 4.1467 1.5182 -3.6040 11 6 3.1699 1.4420 -4.7491 12 6 2.8166 0.2124 -5.2751 13 6 1.9211 0.1384 -6.3262 14 6 1.3715 1.2923 -6.8496 15 6 1.7284 2.5285 -6.3275 16 8 1.1945 3.6648 -6.8438 17 6 0.4188 3.5340 -7.9388 18 1 0.1802 2.5511 -8.3173 19 6 -0.0726 4.6616 -8.5789 20 7 0.2185 5.8589 -8.1182 21 14 -1.1468 4.4804 -10.0964 22 1 -1.3238 3.0394 -10.4084 23 1 -2.4730 5.0976 -9.8405 24 1 -0.4980 5.1603 -11.2463 25 6 2.6288 2.5996 -5.2722 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.4941 1.1980 2.0790 32 1 5.0146 0.8563 1.2187 33 1 5.1595 2.9942 2.4663 34 1 5.2699 3.2701 0.7117 35 1 3.7495 3.6118 1.5720 36 1 2.4500 1.3838 -2.3346 37 1 4.8416 0.6805 -3.6624 38 1 4.7010 2.4548 -3.6615 39 1 3.2412 -0.6917 -4.8642 40 1 1.6476 -0.8230 -6.7350 41 1 0.6681 1.2336 -7.6672 42 1 -0.1250 6.6477 -8.5662 43 1 2.9056 3.5593 -4.8615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330247401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:11 Heat of formation + Delta-G solvation = -28.994368 kcal Electronic energy + Delta-G solvation = -25089.135221 eV Core-core repulsion = 21330.613867 eV Total energy + Delta-G solvation = -3758.521354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21158 -39.11090 -37.70222 -36.83564 -34.91801 -34.02389 -32.34082 -31.62261 -30.79305 -29.37657 -28.86821 -25.95174 -25.12174 -23.48874 -23.02487 -21.70861 -20.81303 -20.55172 -19.09261 -17.76429 -17.24368 -16.82215 -16.03537 -15.47327 -15.35735 -15.21292 -14.82628 -14.62141 -14.35934 -14.32523 -13.96681 -13.60351 -13.52441 -13.07754 -12.88878 -12.67161 -12.44884 -12.38378 -12.20885 -12.13763 -11.82130 -11.67970 -11.38738 -11.24782 -10.96189 -10.81893 -10.70363 -10.68698 -10.46446 -10.08591 -9.40831 -9.31438 -8.89838 -8.76911 -8.25427 -7.33021 -6.49083 -4.08584 1.59831 1.97293 2.26918 3.02607 3.09401 3.11096 3.16625 3.42675 3.92414 4.44496 4.63441 4.69373 4.81987 4.82532 4.93998 5.03312 5.06819 5.07115 5.20915 5.27482 5.40937 5.52915 5.55652 5.60236 5.75109 5.75941 5.83304 5.84450 5.91564 6.07475 6.11683 6.25448 6.36488 6.52916 6.55829 6.81821 6.87444 7.00283 7.19103 7.27036 7.35813 7.70609 7.93484 7.95195 8.46681 8.96259 9.65167 10.68733 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.002896 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.768924 B = 9665.103112 C = 9734.830893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.019 3.981 3 O -0.144 6.144 4 N -0.497 5.497 5 C 0.138 3.862 6 C -0.170 4.170 7 C 0.713 3.287 8 O -0.576 6.576 9 N -0.729 5.729 10 C 0.184 3.816 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.151 3.849 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.168 4.168 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.404 0.596 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.270 0.730 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 -11.839 15.694 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 O -0.149 6.149 4 N -0.280 5.280 5 C 0.017 3.983 6 C -0.228 4.228 7 C 0.416 3.584 8 O -0.454 6.454 9 N -0.383 5.383 10 C 0.061 3.939 11 C -0.074 4.074 12 C -0.214 4.214 13 C -0.095 4.095 14 C -0.245 4.245 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.188 4.188 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.239 0.761 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.282 -11.100 15.678 19.488 hybrid contribution -1.231 -0.446 -0.826 1.549 sum 2.050 -11.546 14.852 18.923 Atomic orbital electron populations 1.21733 0.92060 1.03071 1.03762 1.23122 0.96127 0.85287 1.01357 1.90685 1.02244 1.25261 1.96736 1.49390 0.94451 1.78482 1.05637 1.21502 0.95352 0.98578 0.82885 1.22157 1.02048 0.96211 1.02375 1.15864 0.84744 0.77982 0.79829 1.90955 1.10835 1.58651 1.85004 1.45313 1.11012 1.77900 1.04112 1.20060 0.92384 1.02517 0.78955 1.19257 0.98247 0.93187 0.96677 1.20467 1.03928 0.95972 1.01052 1.20732 0.95980 0.97187 0.95575 1.21239 1.06081 0.92148 1.05031 1.19317 0.91399 0.87053 0.92537 1.83985 1.56791 1.26502 1.40680 1.21371 1.27451 0.94681 1.03411 0.88992 1.25299 0.97981 0.94213 0.98996 1.70044 1.42466 0.97594 1.39374 0.85646 0.79045 0.78826 0.79893 1.19096 1.20120 1.20091 1.20105 1.01092 0.97979 0.99645 0.91554 0.91052 0.90360 0.92270 0.92468 0.89800 0.90059 0.91369 0.91242 0.92144 0.76101 0.91010 0.90828 0.87574 0.87311 0.85463 0.91993 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.02 0.17 7.04 37.16 0.26 0.44 16 3 O -0.14 -1.69 10.19 -11.47 -0.12 -1.81 16 4 N -0.50 -6.23 3.02 -65.22 -0.20 -6.43 16 5 C 0.14 1.36 6.38 -4.04 -0.03 1.33 16 6 C -0.17 -1.66 10.04 37.16 0.37 -1.29 16 7 C 0.71 10.77 8.21 -86.91 -0.71 10.05 16 8 O -0.58 -10.10 15.42 5.29 0.08 -10.02 16 9 N -0.73 -10.65 5.52 -66.42 -0.37 -11.02 16 10 C 0.18 2.81 5.80 -5.19 -0.03 2.78 16 11 C -0.07 -1.25 5.25 -104.65 -0.55 -1.80 16 12 C -0.19 -3.19 9.70 -39.53 -0.38 -3.57 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 14 C -0.23 -4.71 9.17 -39.40 -0.36 -5.07 16 15 C 0.15 3.54 6.65 -39.11 -0.26 3.28 16 16 O -0.18 -4.94 9.76 0.05 0.00 -4.94 16 17 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 18 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.98 13.67 55.48 0.76 -24.23 16 21 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.85 7.34 -51.93 -0.38 0.47 16 35 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.40 5.71 7.54 -40.82 -0.31 5.40 16 37 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -31.75 369.03 -7.48 -39.23 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.29 Total: 8.14 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.89 Total: -9.67 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.19 Total: -41.67 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.03 Total: -16.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.75 -7.48 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330247401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.235 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds