Wall clock time and date at job start Tue Mar 31 2020 10:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47411 * 2 1 4 4 C 1.46496 * 119.99882 * 270.00112 * 3 2 1 5 5 C 1.50699 * 109.46897 * 269.99886 * 4 3 2 6 6 H 1.07995 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00110 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00323 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47425 * 89.99734 * 9 7 5 11 11 H 1.48503 * 109.47324 * 210.00051 * 9 7 5 12 12 H 1.48497 * 109.46889 * 329.99718 * 9 7 5 13 13 C 1.34777 * 119.99673 * 89.99666 * 3 2 1 14 14 O 1.21599 * 119.99412 * 180.02562 * 13 3 2 15 15 N 1.34776 * 120.00352 * 0.02562 * 13 3 2 16 16 C 1.40146 * 119.99780 * 184.59206 * 15 13 3 17 17 C 1.38834 * 120.01702 * 144.90653 * 16 15 13 18 18 C 1.38095 * 119.98968 * 180.27074 * 17 16 15 19 19 C 1.38717 * 120.01172 * 359.49945 * 18 17 16 20 20 O 1.35981 * 119.98506 * 180.25510 * 19 18 17 21 21 C 1.42898 * 116.99641 * 0.24313 * 20 19 18 22 22 O 1.42905 * 109.47172 * 75.00843 * 21 20 19 23 23 C 1.42898 * 114.00298 * 74.99270 * 22 21 20 24 24 C 1.38712 * 120.02797 * 0.49962 * 19 18 17 25 25 C 1.38096 * 120.01381 * 359.74857 * 24 19 18 26 26 H 1.08998 * 109.47397 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47086 * 299.99998 * 1 2 3 28 28 H 1.09002 * 109.46886 * 59.99969 * 1 2 3 29 29 H 1.08998 * 109.46953 * 239.99286 * 2 1 3 30 30 H 1.09002 * 109.46886 * 120.00031 * 2 1 3 31 31 H 1.09001 * 109.47294 * 29.99961 * 4 3 2 32 32 H 1.09002 * 109.47013 * 149.99881 * 4 3 2 33 33 H 0.96996 * 120.00440 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99727 * 4.58708 * 15 13 3 35 35 H 1.08011 * 120.00441 * 359.97438 * 17 16 15 36 36 H 1.08002 * 119.99282 * 179.72038 * 18 17 16 37 37 H 1.09007 * 109.46856 * 195.00141 * 21 20 19 38 38 H 1.08997 * 109.47738 * 315.00162 * 21 20 19 39 39 H 1.09003 * 109.47063 * 300.00735 * 23 22 21 40 40 H 1.09003 * 109.47032 * 60.00414 * 23 22 21 41 41 H 1.08996 * 109.46829 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.99267 * 179.72911 * 24 19 18 43 43 H 1.07995 * 120.00704 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8774 8 7 3.3496 3.1264 -3.6176 9 14 5.9140 2.0973 -3.4163 10 1 5.9779 0.8766 -4.2594 11 1 6.3930 3.2650 -4.1988 12 1 6.7738 1.9174 -2.2190 13 6 2.2431 2.0165 1.1672 14 8 2.6480 3.1631 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1596 2.0709 3.5462 17 6 1.3179 1.7820 4.6118 18 6 1.4535 2.4661 5.8037 19 6 2.4373 3.4345 5.9398 20 8 2.5737 4.1041 7.1155 21 6 1.6733 3.7553 8.1689 22 8 2.0606 2.4994 8.7302 23 6 3.2145 2.5691 9.5701 24 6 3.2787 3.7236 4.8756 25 6 3.1408 3.0438 3.6815 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0957 3.1410 -1.1384 33 1 3.6757 3.5168 -4.4435 34 1 1.7599 0.4462 2.3357 35 1 0.5539 1.0257 4.5069 36 1 0.7957 2.2445 6.6312 37 1 1.7035 4.5234 8.9418 38 1 0.6612 3.6791 7.7716 39 1 4.0622 2.9386 8.9930 40 1 3.0183 3.2462 10.4016 41 1 3.4434 1.5759 9.9562 42 1 4.0416 4.4808 4.9809 43 1 3.7956 3.2693 2.8529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330708281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:54 Heat of formation + Delta-G solvation = -76.538279 kcal Electronic energy + Delta-G solvation = -25212.875555 eV Core-core repulsion = 21452.292542 eV Total energy + Delta-G solvation = -3760.583012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49803 -39.72825 -38.03767 -36.63026 -35.29916 -33.96034 -32.63600 -30.90715 -30.13689 -28.89997 -27.90362 -26.74623 -25.40996 -23.15852 -23.02259 -22.69899 -21.47585 -19.29630 -18.47197 -17.81665 -17.15742 -16.98432 -16.52787 -16.35183 -15.61719 -15.10988 -14.92662 -14.47666 -14.11191 -14.04870 -13.96658 -13.66004 -13.41215 -13.22460 -13.19737 -12.51072 -12.49016 -12.20929 -12.05234 -11.82170 -11.70518 -11.38263 -11.19694 -10.92918 -10.91099 -10.79031 -10.52398 -10.40588 -10.11310 -9.70120 -9.58972 -9.21473 -8.77996 -8.41933 -7.79741 -7.39514 -6.02614 -4.07244 1.50051 1.57215 3.11272 3.27949 3.31296 3.38227 3.39359 3.43621 3.75141 4.11836 4.38872 4.52448 4.64727 4.79209 4.93082 5.00064 5.06964 5.13845 5.25725 5.31304 5.38508 5.43835 5.51265 5.58328 5.67698 5.81728 5.95961 6.06947 6.15107 6.20008 6.37537 6.44795 6.54149 6.55759 6.77699 6.89022 7.15594 7.38121 7.46368 7.53683 7.70371 7.95768 8.25000 8.61954 8.93832 9.27719 9.58290 11.05220 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.002943 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.006818 B = 9510.550484 C =10316.333076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.607 5.607 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.699 3.301 14 O -0.570 6.570 15 N -0.696 5.696 16 C 0.148 3.852 17 C -0.120 4.120 18 C -0.176 4.176 19 C 0.097 3.903 20 O -0.333 6.333 21 C 0.212 3.788 22 O -0.396 6.396 23 C 0.030 3.970 24 C -0.128 4.128 25 C -0.084 4.084 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.400 0.600 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.129 0.871 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -4.625 22.314 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.342 5.342 4 C 0.141 3.859 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.401 3.599 14 O -0.446 6.446 15 N -0.346 5.346 16 C 0.052 3.948 17 C -0.141 4.141 18 C -0.195 4.195 19 C 0.053 3.947 20 O -0.250 6.250 21 C 0.099 3.901 22 O -0.316 6.316 23 C -0.066 4.066 24 C -0.148 4.148 25 C -0.105 4.105 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.147 0.853 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.452 -3.705 22.006 22.972 hybrid contribution 0.738 -0.591 -0.271 0.984 sum -4.713 -4.296 21.736 22.652 Atomic orbital electron populations 1.22246 0.96700 1.01414 1.02556 1.21361 0.93574 0.84375 1.02383 1.47611 1.67076 1.13271 1.06258 1.19224 0.96182 0.93527 0.76944 1.21459 0.96994 1.31824 1.06199 0.92489 1.24927 0.97823 0.94925 0.96419 1.69930 1.35693 1.33459 1.14336 0.86501 0.84744 0.77625 0.78570 1.20706 1.21109 1.19905 1.15936 0.79144 0.84755 0.80088 1.90880 1.51433 1.16805 1.85510 1.42948 1.74056 1.14023 1.03600 1.17510 0.95471 0.96397 0.85422 1.20622 0.98717 1.01874 0.92874 1.20923 1.00606 0.99195 0.98797 1.18844 0.96459 0.93825 0.85606 1.86216 1.58607 1.59680 1.20473 1.24137 0.92924 0.86475 0.86609 1.88046 1.46638 1.32303 1.64583 1.22808 0.88051 1.02713 0.93056 1.20364 1.00682 1.02563 0.91164 1.21318 0.96861 0.95282 0.97005 0.92136 0.93065 0.91831 0.89546 0.92485 0.94833 0.93722 0.92729 0.76316 0.85809 0.85237 0.88104 0.88143 0.93112 0.93843 0.89543 0.85265 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.61 -12.83 2.46 -180.80 -0.44 -13.27 16 4 C 0.26 6.78 5.16 -5.20 -0.03 6.75 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.70 14.95 8.12 -86.92 -0.71 14.25 16 14 O -0.57 -14.54 13.36 5.28 0.07 -14.47 16 15 N -0.70 -11.52 5.22 -14.19 -0.07 -11.60 16 16 C 0.15 2.39 6.30 -83.61 -0.53 1.86 16 17 C -0.12 -1.59 9.96 -39.41 -0.39 -1.98 16 18 C -0.18 -2.22 8.78 -39.46 -0.35 -2.57 16 19 C 0.10 1.33 6.63 -39.23 -0.26 1.07 16 20 O -0.33 -4.02 10.20 -43.49 -0.44 -4.47 16 21 C 0.21 1.82 6.39 101.05 0.65 2.46 16 22 O -0.40 -3.83 10.20 -59.04 -0.60 -4.43 16 23 C 0.03 0.22 10.89 101.05 1.10 1.32 16 24 C -0.13 -1.94 9.98 -39.46 -0.39 -2.33 16 25 C -0.08 -1.46 8.69 -39.41 -0.34 -1.80 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 30 H 0.06 0.73 6.30 -51.93 -0.33 0.41 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.40 5.31 6.52 -40.82 -0.27 5.05 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.13 1.37 5.85 -52.49 -0.31 1.06 16 37 H 0.10 0.59 8.01 -51.93 -0.42 0.17 16 38 H 0.10 0.74 6.68 -51.93 -0.35 0.39 16 39 H 0.05 0.41 8.03 -51.93 -0.42 -0.01 16 40 H 0.04 0.23 8.11 -51.93 -0.42 -0.19 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.15 3.02 6.22 -52.49 -0.33 2.69 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -34.22 361.59 -7.78 -41.99 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.13 Total: 4.45 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -1.31 Total: 5.29 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.22 Total: -50.71 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.98 Total: -23.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.22 -7.78 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330708281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.544 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds