Wall clock time and date at job start Tue Mar 31 2020 10:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99643 * 2 1 4 4 C 1.50692 * 109.46952 * 293.94844 * 3 2 1 5 5 C 1.28885 * 121.24924 * 95.02934 * 4 3 2 6 6 C 1.51426 * 117.49755 * 180.02562 * 5 4 3 7 7 S 1.83835 * 102.54395 * 16.28374 * 6 5 4 8 8 C 1.51426 * 121.25394 * 274.74425 * 4 3 2 9 9 C 1.38590 * 110.99891 * 123.94718 * 2 1 3 10 10 N 1.31215 * 126.47359 * 236.02004 * 9 2 1 11 11 N 1.28523 * 109.85659 * 180.02562 * 10 9 2 12 12 C 1.30297 * 110.05766 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.34825 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47466 * 90.02401 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 N 1.36452 * 126.46813 * 56.34569 * 9 2 1 24 24 C 1.46493 * 127.13918 * 359.97438 * 23 9 2 25 25 H 1.08994 * 109.47533 * 296.04776 * 1 2 3 26 26 H 1.08998 * 109.47163 * 56.05208 * 1 2 3 27 27 H 1.09001 * 109.46761 * 176.04716 * 1 2 3 28 28 H 1.08999 * 109.47069 * 53.95231 * 3 2 1 29 29 H 1.09003 * 109.46625 * 173.95060 * 3 2 1 30 30 H 1.07999 * 121.25115 * 359.97438 * 5 4 3 31 31 H 1.09003 * 110.79199 * 134.54553 * 6 5 4 32 32 H 1.08995 * 110.79506 * 257.82927 * 6 5 4 33 33 H 1.08998 * 110.79918 * 281.97440 * 8 4 3 34 34 H 1.08998 * 110.79166 * 45.45230 * 8 4 3 35 35 H 1.09002 * 109.47120 * 330.02154 * 13 12 11 36 36 H 1.08998 * 109.46862 * 210.02956 * 13 12 11 37 37 H 1.09002 * 109.47153 * 59.99773 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99964 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47713 * 270.20344 * 24 23 9 41 41 H 1.09001 * 109.47301 * 30.20832 * 24 23 9 42 42 H 1.09001 * 109.47160 * 150.20404 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.5862 2.7866 -1.3996 6 6 0.3067 3.4239 -2.7444 7 16 1.3802 2.4527 -3.8775 8 6 2.5011 1.8878 -2.5317 9 6 1.9657 -0.7225 1.0733 10 7 2.7957 -0.2853 1.9907 11 7 3.0457 -1.2215 2.8351 12 6 2.3958 -2.3027 2.5089 13 6 2.4222 -3.6171 3.2455 14 6 1.3134 -3.6335 4.2996 15 6 1.3395 -4.9483 5.0357 16 1 2.0738 -5.6971 4.7778 17 6 0.4266 -5.1947 6.0392 18 7 -0.4671 -4.2827 6.3536 19 14 0.4594 -6.8241 6.9521 20 1 1.7769 -6.9930 7.6163 21 1 -0.6168 -6.8401 7.9751 22 1 0.2440 -7.9349 5.9903 23 7 1.6886 -2.0248 1.3721 24 6 0.8129 -2.9354 0.6305 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5610 1.9274 0.8309 29 1 3.0797 1.3444 0.1083 30 1 -0.0706 2.9450 -0.5571 31 1 -0.7432 3.3116 -3.0151 32 1 0.5935 4.4754 -2.7414 33 1 3.3854 2.5219 -2.4692 34 1 2.7812 0.8443 -2.6757 35 1 3.3891 -3.7409 3.7332 36 1 2.2645 -4.4324 2.5395 37 1 0.3465 -3.5097 3.8119 38 1 1.4713 -2.8182 5.0056 39 1 -1.1096 -4.4562 7.0593 40 1 -0.2034 -2.8574 1.0168 41 1 0.8215 -2.6677 -0.4261 42 1 1.1690 -3.9588 0.7489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338560708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:55 Heat of formation + Delta-G solvation = 104.532006 kcal Electronic energy + Delta-G solvation = -22832.070076 eV Core-core repulsion = 19554.384482 eV Total energy + Delta-G solvation = -3277.685594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.65565 -38.90511 -36.23096 -34.90809 -33.80190 -31.74676 -30.13851 -28.96983 -27.91324 -27.54745 -26.19402 -25.08772 -23.78981 -21.89852 -20.73503 -20.01328 -18.71884 -17.25156 -16.96417 -16.56070 -16.26263 -15.93931 -15.40355 -15.14721 -14.70756 -14.55149 -14.34967 -13.68188 -13.52735 -13.34786 -13.16343 -13.09168 -12.82887 -12.36718 -12.32818 -12.14082 -11.86830 -11.74189 -11.34632 -11.16909 -10.99746 -10.80609 -10.74066 -10.39070 -10.12689 -9.92708 -9.85890 -9.61628 -9.34400 -9.25106 -8.44050 -8.09311 -7.98152 -6.08639 -4.12906 1.35189 1.43824 1.91197 2.09266 2.54962 3.21390 3.28677 3.33779 3.36045 3.70646 4.07160 4.23656 4.38452 4.65415 4.73331 4.81958 4.90862 4.92914 5.01545 5.03803 5.09000 5.19282 5.20579 5.25112 5.27461 5.37595 5.43100 5.46145 5.58775 5.68114 5.77445 6.01981 6.21387 6.31858 6.42050 6.55422 6.63796 6.87202 7.34885 7.51451 7.65403 7.88583 8.26173 8.93041 9.15525 9.51865 11.02467 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.002500 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.151542 B =11198.368089 C =11338.911165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.446 5.446 3 C 0.117 3.883 4 C -0.112 4.112 5 C -0.155 4.155 6 C -0.040 4.040 7 S -0.292 6.292 8 C -0.029 4.029 9 C 0.332 3.668 10 N -0.324 5.324 11 N -0.294 5.294 12 C 0.214 3.786 13 C -0.031 4.031 14 C 0.033 3.967 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.481 5.481 24 C 0.077 3.923 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.013 0.987 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 12.339 -19.415 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.169 5.169 3 C -0.011 4.011 4 C -0.114 4.114 5 C -0.176 4.176 6 C -0.188 4.188 7 S -0.065 6.065 8 C -0.176 4.176 9 C -0.024 4.024 10 N -0.169 5.169 11 N -0.132 5.132 12 C -0.054 4.054 13 C -0.071 4.071 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.176 5.176 24 C -0.067 4.067 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.791 12.890 -20.245 24.014 hybrid contribution -1.308 -1.167 1.582 2.361 sum -0.517 11.723 -18.664 22.046 Atomic orbital electron populations 1.22733 0.84594 1.03918 1.02283 1.58577 1.09005 1.14143 1.35141 1.20812 1.02594 0.84901 0.92780 1.21325 0.95666 0.98382 0.96017 1.22628 0.98127 0.98396 0.98410 1.23096 1.02253 1.01197 0.92217 1.88149 1.35728 1.65085 1.17576 1.23089 0.98621 1.05760 0.90165 1.22386 1.01219 0.84159 0.94672 1.74486 1.17613 1.23251 1.01547 1.73988 1.22151 0.97122 1.19986 1.25559 0.93147 1.00290 0.86358 1.20448 1.03961 0.85502 0.97172 1.19056 0.91347 0.97969 0.92172 1.21107 1.16087 1.00781 1.18348 0.92313 1.25011 0.95359 0.96951 0.96926 1.69959 1.18464 1.33970 1.30770 0.86610 0.77801 0.83786 0.79533 1.20041 1.21280 1.20194 1.46036 1.38176 1.10080 1.23290 1.22099 0.94067 0.94095 0.96398 0.93992 0.89353 0.90387 0.91710 0.87865 0.84442 0.87310 0.87906 0.87802 0.86802 0.89244 0.91206 0.96844 0.95670 0.92797 0.90175 0.89370 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.09 60.07 0.55 0.67 16 2 N -0.45 -5.40 4.80 -183.76 -0.88 -6.28 16 3 C 0.12 1.24 4.70 -4.98 -0.02 1.22 16 4 C -0.11 -0.94 4.84 -100.15 -0.49 -1.42 16 5 C -0.16 -1.10 8.43 -35.10 -0.30 -1.39 16 6 C -0.04 -0.26 7.46 36.36 0.27 0.01 16 7 S -0.29 -2.66 23.55 -107.50 -2.53 -5.20 16 8 C -0.03 -0.24 7.32 36.36 0.27 0.03 16 9 C 0.33 5.36 7.20 -318.86 -2.30 3.07 16 10 N -0.32 -6.24 11.16 30.32 0.34 -5.91 16 11 N -0.29 -6.30 12.18 32.99 0.40 -5.90 16 12 C 0.21 4.19 7.32 -154.02 -1.13 3.06 16 13 C -0.03 -0.62 5.53 -27.89 -0.15 -0.77 16 14 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 15 C -0.53 -14.17 9.11 -34.44 -0.31 -14.49 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 N -0.48 -7.84 3.21 -121.46 -0.39 -8.23 16 24 C 0.08 0.91 9.34 59.84 0.56 1.47 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.73 6.21 -51.93 -0.32 0.41 16 27 H 0.08 0.75 5.44 -51.93 -0.28 0.47 16 28 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 29 H 0.10 1.20 7.75 -51.93 -0.40 0.80 16 30 H 0.14 0.83 8.05 -52.49 -0.42 0.41 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.07 1.24 7.26 -51.93 -0.38 0.86 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 41 H 0.09 0.84 7.60 -51.93 -0.39 0.45 16 42 H 0.09 1.07 7.25 -51.93 -0.38 0.69 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -32.85 356.41 -11.59 -44.45 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.33 Total: -2.42 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.29 Total: -6.32 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.21 Total: -51.84 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.53 Total: -5.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.85 -11.59 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338560708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.977 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds