Wall clock time and date at job start Tue Mar 31 2020 10:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99643 * 2 1 4 4 C 1.50692 * 109.46952 * 293.94844 * 3 2 1 5 5 C 1.28885 * 121.24924 * 95.02934 * 4 3 2 6 6 C 1.51426 * 117.49755 * 180.02562 * 5 4 3 7 7 S 1.83835 * 102.54395 * 16.28374 * 6 5 4 8 8 C 1.51426 * 121.25394 * 274.74425 * 4 3 2 9 9 C 1.38590 * 110.99891 * 123.94718 * 2 1 3 10 10 N 1.31215 * 126.47359 * 236.02004 * 9 2 1 11 11 N 1.28523 * 109.85659 * 180.02562 * 10 9 2 12 12 C 1.30297 * 110.05766 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.34825 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47466 * 90.02401 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 N 1.36452 * 126.46813 * 56.34569 * 9 2 1 24 24 C 1.46493 * 127.13918 * 359.97438 * 23 9 2 25 25 H 1.08994 * 109.47533 * 296.04776 * 1 2 3 26 26 H 1.08998 * 109.47163 * 56.05208 * 1 2 3 27 27 H 1.09001 * 109.46761 * 176.04716 * 1 2 3 28 28 H 1.08999 * 109.47069 * 53.95231 * 3 2 1 29 29 H 1.09003 * 109.46625 * 173.95060 * 3 2 1 30 30 H 1.07999 * 121.25115 * 359.97438 * 5 4 3 31 31 H 1.09003 * 110.79199 * 134.54553 * 6 5 4 32 32 H 1.08995 * 110.79506 * 257.82927 * 6 5 4 33 33 H 1.08998 * 110.79918 * 281.97440 * 8 4 3 34 34 H 1.08998 * 110.79166 * 45.45230 * 8 4 3 35 35 H 1.09002 * 109.47120 * 330.02154 * 13 12 11 36 36 H 1.08998 * 109.46862 * 210.02956 * 13 12 11 37 37 H 1.09002 * 109.47153 * 59.99773 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99964 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47713 * 270.20344 * 24 23 9 41 41 H 1.09001 * 109.47301 * 30.20832 * 24 23 9 42 42 H 1.09001 * 109.47160 * 150.20404 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.5862 2.7866 -1.3996 6 6 0.3067 3.4239 -2.7444 7 16 1.3802 2.4527 -3.8775 8 6 2.5011 1.8878 -2.5317 9 6 1.9657 -0.7225 1.0733 10 7 2.7957 -0.2853 1.9907 11 7 3.0457 -1.2215 2.8351 12 6 2.3958 -2.3027 2.5089 13 6 2.4222 -3.6171 3.2455 14 6 1.3134 -3.6335 4.2996 15 6 1.3395 -4.9483 5.0357 16 1 2.0738 -5.6971 4.7778 17 6 0.4266 -5.1947 6.0392 18 7 -0.4671 -4.2827 6.3536 19 14 0.4594 -6.8241 6.9521 20 1 1.7769 -6.9930 7.6163 21 1 -0.6168 -6.8401 7.9751 22 1 0.2440 -7.9349 5.9903 23 7 1.6886 -2.0248 1.3721 24 6 0.8129 -2.9354 0.6305 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5610 1.9274 0.8309 29 1 3.0797 1.3444 0.1083 30 1 -0.0706 2.9450 -0.5571 31 1 -0.7432 3.3116 -3.0151 32 1 0.5935 4.4754 -2.7414 33 1 3.3854 2.5219 -2.4692 34 1 2.7812 0.8443 -2.6757 35 1 3.3891 -3.7409 3.7332 36 1 2.2645 -4.4324 2.5395 37 1 0.3465 -3.5097 3.8119 38 1 1.4713 -2.8182 5.0056 39 1 -1.1096 -4.4562 7.0593 40 1 -0.2034 -2.8574 1.0168 41 1 0.8215 -2.6677 -0.4261 42 1 1.1690 -3.9588 0.7489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338560708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:54 Heat of formation + Delta-G solvation = 87.203953 kcal Electronic energy + Delta-G solvation = -22832.821477 eV Core-core repulsion = 19554.384482 eV Total energy + Delta-G solvation = -3278.436994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.01978 -39.76450 -37.09537 -36.40054 -35.49150 -33.56647 -30.85609 -30.42025 -28.85410 -28.56552 -27.43338 -26.54531 -24.67537 -23.72536 -21.91659 -21.50730 -19.39280 -18.67129 -18.17755 -17.73306 -17.53056 -17.16385 -16.53375 -16.24956 -15.91236 -15.62846 -15.21919 -14.97569 -14.84249 -14.40577 -14.22662 -14.17795 -14.00961 -13.79958 -13.30512 -12.99332 -12.89619 -12.82425 -12.72111 -12.63997 -12.50820 -12.41346 -12.01869 -11.82740 -11.56744 -11.41984 -11.33474 -11.17764 -10.80616 -10.55995 -10.16054 -9.29774 -8.77845 -8.20154 -6.32270 0.63089 0.78982 0.83554 1.27707 1.41579 1.44165 1.46885 1.54337 1.77821 2.42512 2.65695 3.14302 3.42586 3.46184 3.55857 3.73616 3.87954 3.97663 4.16868 4.20119 4.26008 4.34681 4.40018 4.42341 4.46904 4.53147 4.56120 4.59173 4.65733 4.67940 4.75977 4.80653 4.91164 5.01205 5.15637 5.37467 5.44639 5.51368 5.60062 5.64526 5.78820 6.11652 6.17881 6.83623 7.37812 7.73582 8.91690 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.002500 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.151542 B =11198.368089 C =11338.911165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.439 5.439 3 C 0.122 3.878 4 C -0.124 4.124 5 C -0.137 4.137 6 C -0.029 4.029 7 S -0.336 6.336 8 C -0.020 4.020 9 C 0.350 3.650 10 N -0.358 5.358 11 N -0.331 5.331 12 C 0.197 3.803 13 C -0.015 4.015 14 C 0.044 3.956 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.261 1.261 23 N -0.479 5.479 24 C 0.068 3.932 25 H 0.033 0.967 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.098 0.902 37 H -0.004 1.004 38 H -0.019 1.019 39 H 0.263 0.737 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 11.833 -20.961 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.162 5.162 3 C -0.006 4.006 4 C -0.126 4.126 5 C -0.157 4.157 6 C -0.176 4.176 7 S -0.110 6.110 8 C -0.168 4.168 9 C -0.008 4.008 10 N -0.202 5.202 11 N -0.170 5.170 12 C -0.072 4.072 13 C -0.054 4.054 14 C 0.006 3.994 15 C -0.577 4.577 16 H 0.091 0.909 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.185 1.185 23 N -0.174 5.174 24 C -0.073 4.073 25 H 0.052 0.948 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.014 0.986 38 H 0.000 1.000 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.078 12.381 -21.826 25.093 hybrid contribution -1.097 -0.886 1.964 2.418 sum -1.175 11.495 -19.862 22.979 Atomic orbital electron populations 1.22837 0.82812 1.04892 1.02902 1.58759 1.10271 1.14718 1.32487 1.20754 1.01703 0.84082 0.94052 1.21087 0.96738 0.99781 0.94975 1.22827 0.97216 0.96633 0.99045 1.23218 1.02484 1.01369 0.90536 1.88327 1.37171 1.66052 1.19457 1.23021 0.98665 1.05441 0.89623 1.22802 0.99494 0.84317 0.94176 1.74386 1.19818 1.23375 1.02667 1.73876 1.23580 0.98121 1.21412 1.25281 0.94396 0.99726 0.87799 1.20141 1.01777 0.87030 0.96490 1.18817 0.92296 0.95852 0.92427 1.21579 1.16102 1.01600 1.18466 0.90942 1.25979 0.94931 1.00784 0.97973 1.70109 1.19463 1.36314 1.31592 0.85472 0.77845 0.79332 0.78238 1.19323 1.21353 1.18511 1.46188 1.37966 1.10608 1.22588 1.22454 0.93486 0.93899 0.97499 0.94808 0.86925 0.89634 0.92070 0.89334 0.82890 0.85544 0.86314 0.87164 0.87563 0.89459 0.88418 0.98576 1.00021 0.92807 0.89661 0.86509 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.09 127.69 1.16 1.38 16 2 N -0.44 -10.05 4.80 -735.29 -3.53 -13.58 16 3 C 0.12 2.47 4.70 85.55 0.40 2.88 16 4 C -0.12 -1.85 4.84 -14.15 -0.07 -1.92 16 5 C -0.14 -1.55 8.43 27.99 0.24 -1.31 16 6 C -0.03 -0.29 7.46 71.47 0.53 0.24 16 7 S -0.34 -5.60 23.55 -56.49 -1.33 -6.93 16 8 C -0.02 -0.31 7.32 71.47 0.52 0.22 16 9 C 0.35 11.15 7.20 260.11 1.87 13.02 16 10 N -0.36 -14.07 11.16 -58.00 -0.65 -14.72 16 11 N -0.33 -14.62 12.18 -49.54 -0.60 -15.23 16 12 C 0.20 7.81 7.32 137.64 1.01 8.82 16 13 C -0.01 -0.59 5.53 29.85 0.16 -0.43 16 14 C 0.04 2.28 4.95 29.85 0.15 2.43 16 15 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 17 C 0.00 0.07 5.46 84.66 0.46 0.54 16 18 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 19 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 N -0.48 -15.31 3.21 -538.19 -1.73 -17.03 16 24 C 0.07 1.48 9.34 127.77 1.19 2.68 16 25 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 1.49 6.21 -2.39 -0.01 1.48 16 27 H 0.09 1.42 5.44 -2.39 -0.01 1.41 16 28 H 0.06 1.30 8.03 -2.39 -0.02 1.28 16 29 H 0.09 2.07 7.75 -2.39 -0.02 2.05 16 30 H 0.15 1.31 8.05 -2.91 -0.02 1.29 16 31 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.10 3.33 7.26 -2.39 -0.02 3.31 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.08 1.81 7.84 -2.38 -0.02 1.79 16 41 H 0.12 1.88 7.60 -2.39 -0.02 1.86 16 42 H 0.10 2.12 7.25 -2.39 -0.02 2.10 16 Total: -1.00 -72.97 356.41 3.36 -69.61 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.01 Total: 9.27 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 7.87 Total: -0.41 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -6.22 Total: -116.28 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.33 Total: -6.93 kcal Total: -72.97 3.36 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338560708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.817 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds