Wall clock time and date at job start Tue Mar 31 2020 09:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.46998 * 2 1 4 4 O 1.42900 * 109.47609 * 119.99875 * 2 1 3 5 5 C 1.52996 * 109.47513 * 240.00247 * 2 1 3 6 6 N 1.46495 * 109.47715 * 179.97438 * 5 2 1 7 7 C 1.46501 * 119.99905 * 269.99917 * 6 5 2 8 8 C 1.52998 * 109.47021 * 269.99607 * 7 6 5 9 9 O 1.42894 * 109.47161 * 65.00315 * 8 7 6 10 10 C 1.34782 * 120.00078 * 89.99329 * 6 5 2 11 11 O 1.21586 * 119.99932 * 179.97438 * 10 6 5 12 12 N 1.34770 * 119.99548 * 0.28295 * 10 6 5 13 13 C 1.39961 * 119.99464 * 174.55044 * 12 10 6 14 14 C 1.39290 * 119.94329 * 145.78230 * 13 12 10 15 15 C 1.38486 * 120.42940 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32193 * 359.97438 * 15 14 13 17 17 C 1.40744 * 119.88313 * 0.02562 * 16 15 14 18 18 C 1.41406 * 120.21310 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00120 * 205.17779 * 18 17 16 20 20 C 1.39928 * 119.99974 * 25.17397 * 18 17 16 21 21 N 1.30837 * 119.99825 * 16.78691 * 20 18 17 22 22 Si 1.86802 * 120.00386 * 196.78283 * 20 18 17 23 23 H 1.48491 * 109.46880 * 60.00277 * 22 20 18 24 24 H 1.48502 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46800 * 300.00107 * 22 20 18 26 26 C 1.38231 * 119.94857 * 325.50841 * 13 12 10 27 27 H 1.09003 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47218 * 299.99702 * 1 2 3 29 29 H 1.08995 * 109.47821 * 60.00220 * 1 2 3 30 30 H 0.96708 * 113.99566 * 300.00407 * 4 2 1 31 31 H 1.09003 * 109.46879 * 59.99310 * 5 2 1 32 32 H 1.09000 * 109.47007 * 300.00129 * 5 2 1 33 33 H 1.09003 * 109.47061 * 30.00006 * 7 6 5 34 34 H 1.09010 * 109.46816 * 149.99415 * 7 6 5 35 35 H 1.09004 * 109.46975 * 185.00195 * 8 7 6 36 36 H 1.09000 * 109.47120 * 304.99917 * 8 7 6 37 37 H 0.96696 * 114.00496 * 179.97438 * 9 8 7 38 38 H 0.96995 * 120.00803 * 354.55132 * 12 10 6 39 39 H 1.08000 * 119.78812 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.84115 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.06397 * 179.97438 * 16 15 14 42 42 H 0.96993 * 119.99897 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.16063 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 3.5050 -0.7207 -1.2496 7 6 4.2369 0.3783 -1.8842 8 6 4.4917 0.0394 -3.3543 9 8 3.2452 -0.0354 -4.0489 10 6 4.1794 -1.7311 -0.6659 11 8 5.3952 -1.7309 -0.6666 12 7 3.5060 -2.7449 -0.0869 13 6 4.2021 -3.8491 0.4180 14 6 3.7385 -4.5013 1.5581 15 6 4.4190 -5.5952 2.0660 16 6 5.5621 -6.0508 1.4485 17 6 6.0425 -5.4019 0.2956 18 6 7.2161 -5.8635 -0.3440 19 1 7.8086 -5.1853 -0.9401 20 6 7.6098 -7.1990 -0.2044 21 7 6.7550 -8.0915 0.2252 22 14 9.3558 -7.7076 -0.6316 23 1 10.3123 -6.9605 0.2239 24 1 9.5175 -9.1654 -0.3992 25 1 9.6251 -7.4016 -2.0595 26 6 5.3453 -4.2943 -0.2189 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 1.7210 -0.2700 1.9980 31 1 1.6766 -0.2073 -2.1392 32 1 1.6767 -1.7488 -1.2493 33 1 3.6475 1.2929 -1.8190 34 1 5.1894 0.5228 -1.3742 35 1 5.1121 0.8149 -3.8037 36 1 5.0038 -0.9204 -3.4224 37 1 3.3306 -0.2468 -4.9886 38 1 2.5390 -2.7093 -0.0201 39 1 2.8424 -4.1515 2.0493 40 1 4.0513 -6.0934 2.9509 41 1 6.0898 -6.9040 1.8484 42 1 7.0278 -9.0173 0.3216 43 1 5.7028 -3.7923 -1.1057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364130096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:48 Heat of formation + Delta-G solvation = -101.424351 kcal Electronic energy + Delta-G solvation = -26055.114934 eV Core-core repulsion = 22293.452781 eV Total energy + Delta-G solvation = -3761.662154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.14805 -37.90520 -37.25906 -36.73230 -34.73300 -34.24852 -32.85311 -31.53204 -29.67585 -29.56170 -27.61226 -26.07710 -25.14326 -23.11723 -21.82245 -20.93235 -20.61562 -18.99891 -18.27269 -17.53339 -17.25316 -17.10201 -16.07012 -15.54838 -15.25138 -14.74202 -14.56135 -14.42794 -14.14246 -14.05369 -13.58792 -13.15296 -12.94497 -12.83202 -12.69085 -12.40018 -12.28182 -12.06152 -11.90296 -11.50933 -11.37701 -11.23162 -11.05607 -10.99770 -10.75971 -10.38578 -10.16768 -10.11031 -9.96400 -9.54896 -9.27828 -8.96440 -8.81274 -8.42520 -7.29427 -6.70823 -6.55819 -4.20653 2.86687 2.96274 3.13124 3.15023 3.19397 3.33632 3.87316 4.05225 4.08391 4.27092 4.43804 4.73185 4.78877 4.82707 4.97247 5.12480 5.15712 5.24804 5.30940 5.53449 5.61743 5.67795 5.79636 5.85328 5.87552 5.92100 6.40180 6.58811 6.65344 7.03122 7.03708 7.18882 7.24007 7.38846 7.46766 7.52008 7.57196 7.84154 7.98654 8.15685 8.24815 8.41199 8.63335 8.80178 9.05189 9.12494 9.27730 10.34101 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.003911 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.194651 B = 7157.219209 C = 8409.175764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.055 0.945 4 O -0.555 6.555 5 C 0.121 3.879 6 N -0.622 5.622 7 C 0.138 3.862 8 C 0.057 3.943 9 O -0.574 6.574 10 C 0.710 3.290 11 O -0.575 6.575 12 N -0.668 5.668 13 C 0.173 3.827 14 C -0.259 4.259 15 C -0.093 4.093 16 C -0.175 4.175 17 C 0.120 3.880 18 C -0.461 4.461 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.799 5.799 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.211 4.211 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.376 0.624 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.376 0.624 38 H 0.397 0.603 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.278 0.722 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 15.335 -4.077 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.017 3.983 3 H 0.073 0.927 4 O -0.360 6.360 5 C -0.003 4.003 6 N -0.360 5.360 7 C 0.014 3.986 8 C -0.022 4.022 9 O -0.380 6.380 10 C 0.412 3.588 11 O -0.452 6.452 12 N -0.314 5.314 13 C 0.080 3.920 14 C -0.280 4.280 15 C -0.113 4.113 16 C -0.195 4.195 17 C 0.117 3.883 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.140 4.140 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.233 4.233 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.223 0.777 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.223 0.777 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.265 14.850 -3.924 18.474 hybrid contribution 0.050 0.046 -0.302 0.310 sum -10.215 14.896 -4.226 18.550 Atomic orbital electron populations 1.22465 0.96123 1.03131 1.02511 1.22373 0.92657 0.95995 0.87279 0.92746 1.86643 1.76915 1.56891 1.15555 1.21585 0.80789 1.01700 0.96213 1.46882 1.05356 1.23831 1.59884 1.21291 0.98404 0.88517 0.90382 1.22737 0.85591 1.00763 0.93149 1.86409 1.31142 1.94326 1.26087 1.15806 0.85205 0.79483 0.78310 1.90940 1.11362 1.78416 1.64485 1.42602 1.09649 1.18451 1.60744 1.17267 0.94511 0.86590 0.93603 1.20028 1.04715 1.03519 0.99780 1.20439 0.96342 0.96017 0.98460 1.21304 0.98025 1.02936 0.97208 1.17469 0.91226 0.89501 0.90063 1.19521 1.07232 0.94696 1.27603 0.90581 1.25870 0.98580 0.96441 0.93135 1.69834 1.34641 1.02907 1.35080 0.86396 0.82926 0.77584 0.79917 1.18885 1.20469 1.19140 1.20983 0.97922 1.02242 1.02132 0.91490 0.92203 0.91516 0.77731 0.88048 0.90550 0.90588 0.88384 0.93026 0.92658 0.77696 0.76697 0.89375 0.89247 0.86471 0.91079 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.53 37.15 0.35 -0.96 16 2 C 0.08 0.74 3.85 -26.74 -0.10 0.64 16 3 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 4 O -0.55 -6.54 11.25 -35.23 -0.40 -6.94 16 5 C 0.12 1.40 4.82 -4.05 -0.02 1.38 16 6 N -0.62 -9.27 2.39 -179.42 -0.43 -9.70 16 7 C 0.14 1.73 5.81 -4.04 -0.02 1.71 16 8 C 0.06 0.65 7.39 37.16 0.27 0.92 16 9 O -0.57 -5.93 12.48 -35.23 -0.44 -6.37 16 10 C 0.71 14.34 7.50 -86.92 -0.65 13.68 16 11 O -0.58 -14.02 13.68 5.29 0.07 -13.94 16 12 N -0.67 -13.61 4.65 -14.27 -0.07 -13.68 16 13 C 0.17 4.26 6.25 -83.76 -0.52 3.73 16 14 C -0.26 -6.14 9.97 -39.10 -0.39 -6.53 16 15 C -0.09 -2.31 10.02 -39.69 -0.40 -2.71 16 16 C -0.17 -4.81 8.69 -38.84 -0.34 -5.15 16 17 C 0.12 3.47 5.57 -106.85 -0.59 2.88 16 18 C -0.46 -13.18 9.05 -37.74 -0.34 -13.52 16 19 H 0.08 2.15 7.90 -52.49 -0.41 1.73 16 20 C 0.08 2.03 5.16 -17.34 -0.09 1.94 16 21 N -0.80 -21.55 10.94 55.55 0.61 -20.94 16 22 Si 0.91 19.77 29.59 -169.99 -5.03 14.74 16 23 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 C -0.21 -5.82 8.39 -38.69 -0.32 -6.15 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.38 2.99 9.08 45.56 0.41 3.40 16 31 H 0.10 1.02 7.11 -51.93 -0.37 0.65 16 32 H 0.08 0.93 6.44 -51.93 -0.33 0.60 16 33 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.10 1.36 7.42 -51.92 -0.39 0.98 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.38 2.43 9.12 45.56 0.42 2.85 16 38 H 0.40 6.98 5.73 -40.82 -0.23 6.75 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.12 3.29 6.17 -52.49 -0.32 2.96 16 42 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 43 H 0.10 2.98 6.48 -52.49 -0.34 2.64 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -34.87 355.09 -8.01 -42.87 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -4.51 Total: 16.73 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.17 Total: -8.12 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.11 Total: -44.31 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.76 Total: -27.26 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.87 -8.01 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364130096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.551 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds