Wall clock time and date at job start Tue Mar 31 2020 10:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21280 * 119.99776 * 2 1 4 4 N 1.34772 * 119.99945 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99997 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47168 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47074 * 59.99947 * 6 5 4 8 8 O 1.42907 * 109.46903 * 300.00200 * 6 5 4 9 9 C 1.52996 * 109.47320 * 180.02562 * 6 5 4 10 10 N 1.46896 * 109.47333 * 184.99838 * 9 6 5 11 11 C 1.46905 * 111.00155 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47044 * 180.02562 * 11 10 9 13 13 C 1.38297 * 119.93202 * 90.00061 * 12 11 10 14 14 C 1.38101 * 120.07230 * 180.02562 * 13 12 11 15 15 C 1.38886 * 119.92536 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38110 * 119.92772 * 359.48927 * 25 15 14 27 27 H 1.08999 * 109.46788 * 240.00363 * 1 2 3 28 28 H 1.08999 * 109.47018 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46797 * 119.99950 * 1 2 3 30 30 H 0.97003 * 119.99844 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.46742 * 60.00309 * 5 4 2 32 32 H 1.08994 * 109.47461 * 300.00069 * 5 4 2 33 33 H 0.96702 * 113.99920 * 299.99551 * 8 6 5 34 34 H 1.09008 * 109.47042 * 64.99795 * 9 6 5 35 35 H 1.09002 * 109.47027 * 304.99995 * 9 6 5 36 36 H 1.00900 * 111.00180 * 303.95828 * 10 9 6 37 37 H 1.09003 * 109.46647 * 59.99968 * 11 10 9 38 38 H 1.09004 * 109.46926 * 300.00194 * 11 10 9 39 39 H 1.07999 * 119.96698 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 179.97438 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07996 * 119.96227 * 180.23396 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0001 7 1 3.7922 -3.1238 -0.8897 8 8 3.6800 -3.2831 1.1672 9 6 5.6859 -2.6098 0.0001 10 7 6.1756 -3.9895 -0.1204 11 6 7.6441 -4.0285 -0.1244 12 6 8.1083 -5.4567 -0.2498 13 6 8.3204 -6.0060 -1.5011 14 6 8.7453 -7.3147 -1.6194 15 6 8.9600 -8.0791 -0.4800 16 8 9.3782 -9.3657 -0.5929 17 6 9.6766 -9.8057 -1.8320 18 1 9.5011 -9.1706 -2.6875 19 6 10.2089 -11.0740 -2.0077 20 7 10.4231 -11.8477 -0.9655 21 14 10.6229 -11.6835 -3.7242 22 1 11.6307 -10.7830 -4.3396 23 1 11.1746 -13.0597 -3.6412 24 1 9.3931 -11.6921 -4.5565 25 6 8.7411 -7.5263 0.7751 26 6 8.3208 -6.2155 0.8868 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6959 -2.0072 0.0005 31 1 4.0095 -0.6528 0.8895 32 1 4.0090 -0.6540 -0.8904 33 1 3.9657 -2.8794 1.9982 34 1 6.0492 -2.1753 0.9315 35 1 6.0493 -2.0204 -0.8417 36 1 5.8000 -4.5719 0.6130 37 1 8.0213 -3.6037 0.8059 38 1 8.0206 -3.4490 -0.9674 39 1 8.1536 -5.4109 -2.3868 40 1 8.9103 -7.7432 -2.5969 41 1 10.7951 -12.7350 -1.0885 42 1 8.9029 -8.1196 1.6628 43 1 8.1540 -5.7839 1.8626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496923439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:29 Heat of formation + Delta-G solvation = -97.322757 kcal Electronic energy + Delta-G solvation = -23767.662803 eV Core-core repulsion = 20006.178508 eV Total energy + Delta-G solvation = -3761.484295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06760 -39.11300 -38.39864 -36.90999 -35.05129 -34.61053 -32.33400 -31.40491 -30.28006 -30.13189 -28.58810 -25.88932 -25.02508 -23.28365 -22.13867 -21.95877 -20.86317 -20.40232 -17.98703 -17.63703 -17.16468 -16.91163 -16.74222 -16.01561 -15.65807 -15.16409 -14.77547 -14.67953 -14.48309 -14.22691 -13.78691 -13.71157 -13.54910 -13.45212 -13.17325 -12.95829 -12.82516 -12.67597 -12.42053 -12.20678 -11.84181 -11.57140 -11.33455 -11.26796 -10.88822 -10.76009 -10.65218 -10.48346 -10.44665 -10.18010 -9.52255 -9.33856 -8.83920 -8.46154 -8.17382 -7.19395 -6.45495 -4.04311 2.21467 2.25190 2.27170 2.76725 3.13100 3.13959 3.16846 3.89967 3.96488 4.03947 4.39238 4.52626 4.60160 4.70505 4.77907 4.87110 4.92814 5.05084 5.09896 5.22480 5.24811 5.31438 5.39715 5.41473 5.44240 5.69080 5.73256 5.81187 5.87322 5.96776 6.20705 6.42232 6.69095 6.88802 6.94011 7.07773 7.08365 7.18473 7.20786 7.37525 7.42342 7.45927 7.82117 7.82435 7.99549 9.00048 9.70028 10.72390 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.029933 B = 0.001901 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.190933 B =14724.334703 C =14998.322160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.551 6.551 4 N -0.725 5.725 5 C 0.087 3.913 6 C 0.097 3.903 7 H 0.116 0.884 8 O -0.555 6.555 9 C 0.030 3.970 10 N -0.680 5.680 11 C 0.119 3.881 12 C -0.187 4.187 13 C -0.049 4.049 14 C -0.236 4.236 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.194 4.194 26 C -0.068 4.068 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.407 0.593 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.374 0.626 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.349 0.651 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 19.333 2.413 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.429 6.429 4 N -0.378 5.378 5 C -0.038 4.038 6 C 0.037 3.963 7 H 0.134 0.866 8 O -0.360 6.360 9 C -0.101 4.101 10 N -0.313 5.313 11 C -0.009 4.009 12 C -0.188 4.188 13 C -0.067 4.067 14 C -0.255 4.255 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.213 4.213 26 C -0.087 4.087 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.242 0.758 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.221 0.779 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.657 19.266 1.494 24.254 hybrid contribution 0.498 -0.160 0.380 0.647 sum -14.158 19.106 1.873 23.854 Atomic orbital electron populations 1.21916 0.91488 1.05560 1.04428 1.20869 0.90754 0.83369 0.75464 1.90733 1.70966 1.31514 1.49649 1.45935 1.07085 1.09155 1.75616 1.22037 0.80746 0.97801 1.03236 1.22264 0.93210 0.90749 0.90034 0.86603 1.86644 1.76748 1.56830 1.15800 1.22529 0.94301 0.92192 1.01054 1.60491 1.08561 1.08131 1.54100 1.20623 0.86303 0.94370 0.99636 1.19075 1.10713 0.95554 0.93458 1.20566 0.95948 0.94224 0.95998 1.21168 1.10013 0.95348 0.98975 1.19404 0.91852 0.85216 0.93312 1.83974 1.71916 1.20369 1.31819 1.21286 1.43130 1.00181 0.82240 0.89087 1.25293 0.96293 0.95264 0.99662 1.70027 1.40873 1.09166 1.29680 0.85780 0.79117 0.78229 0.80298 1.19513 1.20281 1.19480 1.20165 1.10047 0.95669 0.95438 1.20471 0.98141 0.93195 0.96852 0.89285 0.88974 0.89284 0.75771 0.91227 0.90379 0.77888 0.94971 0.89967 0.83177 0.95435 0.91186 0.87506 0.85589 0.91967 0.86609 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.32 36.01 0.37 -0.40 16 2 C 0.51 4.26 7.94 -10.98 -0.09 4.18 16 3 O -0.55 -7.19 17.09 5.56 0.09 -7.09 16 4 N -0.72 -4.80 5.45 -60.29 -0.33 -5.13 16 5 C 0.09 0.61 5.34 -4.04 -0.02 0.58 16 6 C 0.10 0.68 3.29 -26.73 -0.09 0.60 16 7 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 8 O -0.56 -4.11 12.60 -35.23 -0.44 -4.55 16 9 C 0.03 0.24 5.36 -3.83 -0.02 0.22 16 10 N -0.68 -7.75 6.49 -115.05 -0.75 -8.50 16 11 C 0.12 1.51 5.81 -4.97 -0.03 1.48 16 12 C -0.19 -3.09 5.40 -104.58 -0.56 -3.66 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 14 C -0.24 -5.12 9.17 -39.39 -0.36 -5.48 16 15 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 16 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 17 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 21 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.19 -4.06 9.99 -39.39 -0.39 -4.46 16 26 C -0.07 -1.18 9.69 -39.60 -0.38 -1.56 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.41 2.00 8.35 -40.82 -0.34 1.65 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.37 1.74 9.05 45.56 0.41 2.15 16 34 H 0.03 0.24 8.14 -51.92 -0.42 -0.18 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.35 4.16 8.28 -39.29 -0.33 3.83 16 37 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -33.99 369.84 -7.59 -41.58 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.45 Total: 8.18 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.02 Total: -15.94 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.32 Total: -38.12 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.35 Total: -16.72 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.99 -7.59 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496923439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.744 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds