Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99869 * 2 1 4 4 N 1.34784 * 119.99939 * 180.26839 * 2 1 3 5 5 C 1.46499 * 119.99931 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47084 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.46987 * 304.99822 * 6 5 4 8 8 O 1.42898 * 109.46999 * 65.00128 * 6 5 4 9 9 C 1.52999 * 109.46954 * 185.00351 * 6 5 4 10 10 N 1.46900 * 109.47162 * 180.02562 * 9 6 5 11 11 C 1.46900 * 111.00438 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 10 9 13 13 C 1.38307 * 119.92604 * 269.72228 * 12 11 10 14 14 C 1.38104 * 120.06516 * 179.72799 * 13 12 11 15 15 C 1.38881 * 119.92908 * 0.56970 * 14 13 12 16 16 O 1.35750 * 120.06743 * 179.68645 * 15 14 13 17 17 C 1.34827 * 116.99824 * 174.48645 * 16 15 14 18 18 H 1.08001 * 120.00329 * 5.05497 * 17 16 15 19 19 C 1.38657 * 120.00007 * 185.05069 * 17 16 15 20 20 N 1.31558 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00389 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47410 * 90.00286 * 21 19 17 23 23 H 1.48500 * 109.47438 * 210.00398 * 21 19 17 24 24 H 1.48502 * 109.46936 * 330.00476 * 21 19 17 25 25 C 1.38882 * 119.86172 * 359.70354 * 15 14 13 26 26 C 1.38097 * 119.93184 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47337 * 239.72843 * 1 2 3 28 28 H 1.09004 * 109.47235 * 359.72774 * 1 2 3 29 29 H 1.09001 * 109.46751 * 119.72758 * 1 2 3 30 30 H 0.96995 * 120.00032 * 0.02562 * 4 2 1 31 31 H 1.08995 * 109.47548 * 300.00643 * 5 4 2 32 32 H 1.09001 * 109.46706 * 60.00449 * 5 4 2 33 33 H 0.96693 * 113.99905 * 60.00652 * 8 6 5 34 34 H 1.08997 * 109.47036 * 299.99857 * 9 6 5 35 35 H 1.09000 * 109.47321 * 60.00016 * 9 6 5 36 36 H 1.00902 * 110.99647 * 303.95702 * 10 9 6 37 37 H 1.09006 * 109.46666 * 299.99521 * 11 10 9 38 38 H 1.09001 * 109.47353 * 59.99706 * 11 10 9 39 39 H 1.07998 * 119.96650 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.03552 * 180.27489 * 14 13 12 41 41 H 0.97004 * 120.00560 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.02941 * 179.97438 * 25 15 14 43 43 H 1.08000 * 119.96364 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0055 5 6 3.6459 -1.1673 -0.0060 6 6 4.1559 -2.6097 -0.0133 7 1 3.7216 -3.1529 0.8261 8 8 3.7774 -3.2425 -1.2373 9 6 5.6807 -2.6121 0.1119 10 7 6.1705 -3.9970 0.1043 11 6 7.6340 -4.0386 0.2237 12 6 8.0985 -5.4722 0.2117 13 6 8.2180 -6.1688 1.4006 14 6 8.6380 -7.4844 1.3924 15 6 8.9518 -8.1042 0.1899 16 8 9.3710 -9.3953 0.1792 17 6 9.5490 -9.9710 -1.0269 18 1 9.4385 -9.3844 -1.9270 19 6 9.8741 -11.3163 -1.1118 20 7 10.0083 -12.0309 -0.0154 21 14 10.1200 -12.1142 -2.7827 22 1 11.5460 -11.9997 -3.1809 23 1 9.7408 -13.5480 -2.7072 24 1 9.2688 -11.4293 -3.7884 25 6 8.8361 -7.4002 -1.0017 26 6 8.4102 -6.0866 -0.9874 27 1 -0.3634 -0.5180 0.8875 28 1 -0.3634 1.0277 0.0049 29 1 -0.3633 -0.5096 -0.8924 30 1 1.6959 -2.0072 -0.0098 31 1 4.0089 -0.6494 -0.8937 32 1 4.0095 -0.6574 0.8862 33 1 4.1293 -2.8116 -2.0281 34 1 6.1150 -2.0690 -0.7274 35 1 5.9694 -2.1294 1.0456 36 1 5.7329 -4.5393 0.8341 37 1 8.0822 -3.5049 -0.6144 38 1 7.9359 -3.5663 1.1586 39 1 7.9789 -5.6846 2.3359 40 1 8.7269 -8.0292 2.3207 41 1 10.2354 -12.9722 -0.0747 42 1 9.0798 -7.8794 -1.9385 43 1 8.3197 -5.5388 -1.9138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496923444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = -95.407975 kcal Electronic energy + Delta-G solvation = -23785.796729 eV Core-core repulsion = 20024.395465 eV Total energy + Delta-G solvation = -3761.401264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05014 -39.10645 -38.29867 -36.90354 -35.06065 -34.58109 -32.33005 -31.36369 -30.27984 -30.12829 -28.55353 -25.88648 -25.02470 -23.27613 -22.17373 -21.95093 -20.86529 -20.39174 -17.98647 -17.59942 -17.14383 -16.89425 -16.73677 -15.87095 -15.54115 -15.19984 -14.83629 -14.64632 -14.46428 -14.26217 -13.83027 -13.76028 -13.52962 -13.33645 -13.14425 -12.95810 -12.80686 -12.67550 -12.41142 -12.23471 -11.82896 -11.54630 -11.32677 -11.26950 -10.84773 -10.77111 -10.59220 -10.46275 -10.43118 -10.12160 -9.52354 -9.33163 -8.84094 -8.42053 -8.17183 -7.19177 -6.45432 -4.04154 2.21461 2.25053 2.27420 2.77206 3.12622 3.13961 3.18772 3.90740 3.96828 4.14739 4.40169 4.47626 4.57491 4.73660 4.77765 4.86713 4.93003 5.05584 5.10081 5.22654 5.25896 5.32054 5.35236 5.42566 5.43659 5.66847 5.73385 5.80020 5.87509 5.97162 6.20854 6.42339 6.69263 6.88921 6.94134 7.08169 7.08399 7.18883 7.31414 7.40167 7.43311 7.46265 7.81937 7.82586 7.99769 9.00316 9.70232 10.72542 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027690 B = 0.001947 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.960249 B =14376.345955 C =14819.114296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.551 6.551 4 N -0.725 5.725 5 C 0.086 3.914 6 C 0.100 3.900 7 H 0.103 0.897 8 O -0.543 6.543 9 C 0.028 3.972 10 N -0.674 5.674 11 C 0.119 3.881 12 C -0.186 4.186 13 C -0.069 4.069 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.235 4.235 26 C -0.047 4.047 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.406 0.594 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.376 0.624 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.343 0.657 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.385 19.653 -0.093 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.428 6.428 4 N -0.378 5.378 5 C -0.039 4.039 6 C 0.040 3.960 7 H 0.121 0.879 8 O -0.348 6.348 9 C -0.103 4.103 10 N -0.305 5.305 11 C -0.009 4.009 12 C -0.187 4.187 13 C -0.088 4.088 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.255 4.255 26 C -0.066 4.066 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.223 0.777 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.161 0.839 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.130 19.555 -0.130 24.126 hybrid contribution 0.376 -0.208 -0.244 0.494 sum -13.753 19.347 -0.374 23.740 Atomic orbital electron populations 1.21917 0.91492 1.05564 1.04428 1.20871 0.90753 0.83373 0.75454 1.90733 1.70969 1.31508 1.49638 1.45950 1.07104 1.09122 1.75633 1.22068 0.80707 0.97905 1.03193 1.22109 0.93835 0.91024 0.89037 0.87921 1.86620 1.76114 1.57076 1.15011 1.22560 0.94603 0.91861 1.01237 1.60469 1.06162 1.09734 1.54184 1.20631 0.86681 0.94191 0.99431 1.19072 1.10559 0.95600 0.93502 1.20472 0.98399 0.93407 0.96484 1.20165 1.09443 0.95395 0.96332 1.19402 0.91153 0.85907 0.93331 1.83974 1.72224 1.19589 1.32336 1.21336 1.49259 0.93353 0.82819 0.89026 1.25295 0.96642 0.95237 0.99370 1.70039 1.44131 1.08152 1.27447 0.85708 0.78926 0.78589 0.80196 1.19897 1.20255 1.19154 1.21172 1.10178 0.95540 0.98577 1.20561 0.95785 0.93857 0.96422 0.89329 0.88972 0.89237 0.75847 0.91006 0.90645 0.77657 0.90508 0.94426 0.83859 0.91214 0.95462 0.87542 0.86628 0.92027 0.85587 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.32 36.01 0.37 -0.40 16 2 C 0.51 4.27 7.94 -10.98 -0.09 4.18 16 3 O -0.55 -7.19 17.09 5.56 0.09 -7.10 16 4 N -0.73 -4.82 5.50 -60.30 -0.33 -5.15 16 5 C 0.09 0.60 5.31 -4.04 -0.02 0.58 16 6 C 0.10 0.71 3.21 -26.73 -0.09 0.62 16 7 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 8 O -0.54 -4.69 13.15 -35.23 -0.46 -5.15 16 9 C 0.03 0.23 5.35 -3.82 -0.02 0.21 16 10 N -0.67 -7.63 6.36 -115.06 -0.73 -8.36 16 11 C 0.12 1.50 5.81 -4.98 -0.03 1.47 16 12 C -0.19 -3.07 5.40 -104.58 -0.56 -3.63 16 13 C -0.07 -1.19 9.69 -39.60 -0.38 -1.57 16 14 C -0.19 -4.06 9.99 -39.39 -0.39 -4.45 16 15 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 16 O -0.18 -5.09 9.76 0.06 0.00 -5.09 16 17 C -0.39 -10.95 9.49 30.89 0.29 -10.65 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 21 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 25 C -0.24 -5.12 9.17 -39.39 -0.36 -5.48 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.41 1.97 8.47 -40.82 -0.35 1.63 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.38 2.38 9.04 45.56 0.41 2.79 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.34 3.96 8.72 -39.29 -0.34 3.61 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -34.31 370.75 -7.60 -41.91 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.47 Total: 8.28 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.02 Total: -15.91 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.30 Total: -38.03 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.37 Total: -17.33 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.31 -7.60 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496923444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.497 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds