Wall clock time and date at job start Tue Mar 31 2020 09:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00072 * 2 1 4 4 C 1.38797 * 120.02645 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05322 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11049 * 359.97438 * 5 4 3 7 7 C 1.38750 * 120.05532 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.02845 * 180.02562 * 7 6 5 9 9 C 1.42890 * 116.99738 * 359.97389 * 8 7 6 10 10 C 1.50702 * 109.47026 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00091 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00464 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00582 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.46695 * 35.00037 * 13 12 10 15 15 C 1.52998 * 109.47421 * 275.00484 * 13 12 10 16 16 C 1.52994 * 109.47083 * 154.99767 * 13 12 10 17 17 N 1.46497 * 109.47641 * 305.00336 * 16 13 12 18 18 C 1.36941 * 120.00115 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99713 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99893 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46800 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46921 * 120.00069 * 22 20 18 25 25 H 1.48502 * 109.47069 * 239.99985 * 22 20 18 26 26 C 1.38615 * 120.02764 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46850 * 60.00726 * 1 2 3 28 28 H 1.09002 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47251 * 300.00322 * 1 2 3 30 30 H 1.07992 * 119.97014 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.94482 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.96932 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.47635 * 299.99955 * 9 8 7 34 34 H 1.08998 * 109.47326 * 60.00520 * 9 8 7 35 35 H 0.97002 * 119.99465 * 0.02562 * 12 10 9 36 36 H 1.09007 * 109.46601 * 299.99967 * 15 13 12 37 37 H 1.09000 * 109.46987 * 59.99306 * 15 13 12 38 38 H 1.08997 * 109.47118 * 180.02562 * 15 13 12 39 39 H 1.09002 * 109.47181 * 65.00915 * 16 13 12 40 40 H 1.09004 * 109.47446 * 185.00097 * 16 13 12 41 41 H 0.96997 * 120.00044 * 0.02562 * 17 16 13 42 42 H 0.97002 * 120.00181 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.05142 * 359.74932 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 4.0567 2.5210 0.0011 8 8 5.4137 2.5960 0.0021 9 6 5.9911 3.9030 0.0032 10 6 7.4937 3.7884 0.0036 11 8 8.0185 2.6949 0.0036 12 7 8.2545 4.9008 0.0051 13 6 9.7153 4.7894 0.0061 14 1 10.0139 3.9229 -0.5839 15 6 10.2132 4.6239 1.4433 16 6 10.3237 6.0546 -0.6020 17 7 9.7558 6.2782 -1.9338 18 6 10.1528 7.3592 -2.6748 19 1 10.8848 8.0468 -2.2775 20 6 9.6143 7.5714 -3.9365 21 7 8.7218 6.7337 -4.4204 22 14 10.1563 9.0456 -4.9475 23 1 11.1621 9.8267 -4.1837 24 1 10.7576 8.5775 -6.2221 25 1 8.9805 9.9040 -5.2407 26 6 3.4302 1.2840 0.0005 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2121 2.3187 0.0014 31 1 1.3277 4.5114 0.0019 32 1 3.7846 4.6458 0.0024 33 1 5.6686 4.4435 -0.8868 34 1 5.6673 4.4426 0.8932 35 1 7.8348 5.7754 0.0063 36 1 9.9145 5.4904 2.0333 37 1 9.7797 3.7225 1.8765 38 1 11.3001 4.5415 1.4440 39 1 10.0993 6.9089 0.0368 40 1 11.4041 5.9355 -0.6831 41 1 9.0981 5.6610 -2.2904 42 1 8.3457 6.8817 -5.3022 43 1 4.0196 0.3791 0.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497917103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:32 Heat of formation + Delta-G solvation = -71.012681 kcal Electronic energy + Delta-G solvation = -24517.128253 eV Core-core repulsion = 20756.784849 eV Total energy + Delta-G solvation = -3760.343405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67406 -39.76966 -38.80825 -36.62565 -36.00389 -33.68666 -31.74057 -31.16027 -30.16581 -29.65090 -28.17843 -27.22803 -25.69837 -23.04639 -22.76124 -22.13513 -20.92483 -20.16844 -18.95092 -17.53888 -17.00027 -16.80798 -16.39305 -16.35391 -15.94857 -15.80993 -15.68776 -14.83791 -14.64811 -14.24241 -13.80177 -13.67470 -13.55279 -13.33866 -12.96111 -12.76842 -12.41122 -12.36147 -12.25318 -12.15355 -11.87849 -11.68682 -11.56012 -11.02222 -10.95846 -10.89756 -10.86751 -10.49685 -10.06365 -9.79302 -9.60965 -8.97055 -8.78870 -8.67179 -8.30928 -7.00977 -5.82549 -3.12699 1.19772 1.24033 2.44639 2.78762 3.11955 3.39243 3.45185 3.47465 3.57411 3.85493 4.52204 4.53796 4.68284 4.81009 4.83834 4.84548 4.89108 4.98513 5.04403 5.11650 5.16069 5.25209 5.34577 5.45775 5.50082 5.61841 5.74531 5.97706 6.00162 6.04628 6.06220 6.14574 6.24431 6.30233 6.36228 6.42204 6.64739 6.86506 7.08530 7.25129 7.64547 7.74822 8.35137 8.42656 9.47156 10.02545 10.37835 11.39759 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002699 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.109358 B =10370.099985 C =11678.110579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.163 3.837 4 C -0.248 4.248 5 C -0.040 4.040 6 C -0.245 4.245 7 C 0.173 3.827 8 O -0.284 6.284 9 C 0.040 3.960 10 C 0.518 3.482 11 O -0.525 6.525 12 N -0.707 5.707 13 C 0.135 3.865 14 H 0.088 0.912 15 C -0.158 4.158 16 C 0.144 3.856 17 N -0.732 5.732 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.186 4.186 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.405 0.595 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.714 -7.434 13.153 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.118 3.882 4 C -0.267 4.267 5 C -0.058 4.058 6 C -0.264 4.264 7 C 0.127 3.873 8 O -0.196 6.196 9 C -0.038 4.038 10 C 0.302 3.698 11 O -0.401 6.401 12 N -0.360 5.360 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.217 4.217 16 C 0.016 3.984 17 N -0.378 5.378 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.205 4.205 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.240 0.760 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.996 -8.432 13.098 21.623 hybrid contribution -0.513 1.502 -0.855 1.803 sum -15.510 -6.930 12.242 20.939 Atomic orbital electron populations 1.23073 0.78164 1.03963 1.01480 1.86066 1.21505 1.26802 1.88450 1.18540 0.91277 0.84207 0.94207 1.21113 1.00004 0.92227 1.13334 1.20700 0.93702 0.97131 0.94263 1.21241 0.94986 0.97684 1.12452 1.18604 0.82230 0.93341 0.93167 1.86144 1.16768 1.28857 1.87841 1.22563 0.92561 0.84499 1.04215 1.19866 0.87839 0.85062 0.77022 1.90727 1.74250 1.26600 1.48523 1.45814 1.07183 1.08453 1.74500 1.21279 0.78400 1.00743 0.96471 0.89356 1.22110 1.01478 1.01834 0.96271 1.20994 0.96439 0.92857 0.88103 1.42374 1.50677 1.30915 1.13786 1.19263 1.19291 1.01782 0.97088 0.91036 1.24764 0.99430 0.98988 0.97677 1.69674 1.32109 1.37735 1.18358 0.86112 0.77687 0.82054 0.80268 1.20545 1.21833 1.21861 1.19416 0.91412 0.96984 1.12672 0.92487 0.88192 0.92566 0.85431 0.85358 0.84958 0.88235 0.88989 0.75996 0.92509 0.92362 0.91503 0.95678 0.94709 0.78018 0.93485 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.39 10.49 -19.42 -0.20 -3.59 16 3 C 0.16 1.91 6.68 -39.24 -0.26 1.65 16 4 C -0.25 -2.45 9.04 -39.41 -0.36 -2.81 16 5 C -0.04 -0.39 10.04 -39.63 -0.40 -0.79 16 6 C -0.24 -2.76 9.04 -39.41 -0.36 -3.11 16 7 C 0.17 2.34 6.68 -39.24 -0.26 2.08 16 8 O -0.28 -4.37 9.67 -39.34 -0.38 -4.75 16 9 C 0.04 0.53 5.22 36.01 0.19 0.71 16 10 C 0.52 8.49 7.87 -10.98 -0.09 8.41 16 11 O -0.53 -10.70 16.16 -14.36 -0.23 -10.93 16 12 N -0.71 -10.85 4.52 -53.81 -0.24 -11.09 16 13 C 0.14 2.22 2.73 -67.94 -0.19 2.04 16 14 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 15 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 16 C 0.14 2.71 5.82 -4.05 -0.02 2.69 16 17 N -0.73 -17.74 5.43 -59.91 -0.33 -18.07 16 18 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 22 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.19 -2.46 9.93 -39.29 -0.39 -2.85 16 27 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 0.93 6.29 -52.49 -0.33 0.60 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 33 H 0.10 1.20 7.66 -51.93 -0.40 0.81 16 34 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 35 H 0.41 5.60 8.60 -40.82 -0.35 5.25 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 10.00 7.33 -40.82 -0.30 9.70 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -34.21 365.88 -7.43 -41.64 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.22 Total: 10.99 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.03 Total: 0.25 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.16 Total: -56.05 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.82 Total: -19.27 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.21 -7.43 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497917103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.371 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds