Wall clock time and date at job start Tue Mar 31 2020 09:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47660 * 2 1 4 4 C 1.52999 * 109.47251 * 239.99908 * 2 1 3 5 5 C 1.50696 * 109.47672 * 175.99603 * 4 2 1 6 6 H 1.08004 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99855 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46995 * 60.00033 * 9 7 5 11 11 H 1.48499 * 109.46841 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47194 * 300.00112 * 9 7 5 13 13 N 1.46900 * 109.47080 * 120.00173 * 2 1 3 14 14 C 1.46856 * 110.99906 * 289.38615 * 13 2 1 15 15 C 1.53038 * 109.52076 * 185.84085 * 14 13 2 16 16 C 1.53125 * 109.28076 * 300.82234 * 15 14 13 17 17 C 1.50699 * 109.52541 * 177.56247 * 16 15 14 18 18 C 1.41257 * 126.69881 * 275.40785 * 17 16 15 19 19 C 1.36887 * 103.83846 * 180.13580 * 18 17 16 20 20 C 1.47376 * 126.95263 * 179.86986 * 19 18 17 21 21 O 1.21500 * 119.99574 * 359.71621 * 20 19 18 22 22 O 1.34779 * 120.00120 * 179.71050 * 20 19 18 23 23 O 1.34668 * 106.09437 * 359.61459 * 19 18 17 24 24 N 1.20877 * 111.46587 * 0.25540 * 23 19 18 25 25 C 1.53117 * 109.21080 * 57.62186 * 16 15 14 26 26 C 1.46842 * 111.00171 * 53.59745 * 13 2 1 27 27 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46810 * 300.00030 * 1 2 3 29 29 H 1.08998 * 109.46814 * 59.99590 * 1 2 3 30 30 H 1.09000 * 109.47270 * 296.00405 * 4 2 1 31 31 H 1.09004 * 109.46690 * 55.99398 * 4 2 1 32 32 H 0.97008 * 119.99965 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.45806 * 65.82785 * 14 13 2 34 34 H 1.08998 * 109.46319 * 305.85410 * 14 13 2 35 35 H 1.08998 * 109.50093 * 180.88215 * 15 14 13 36 36 H 1.09003 * 109.53584 * 60.78142 * 15 14 13 37 37 H 1.09000 * 109.52017 * 297.69236 * 16 15 14 38 38 H 1.08001 * 128.07999 * 0.02562 * 18 17 16 39 39 H 0.96694 * 116.99583 * 180.02562 * 22 20 19 40 40 H 1.09000 * 109.50202 * 62.32132 * 25 16 15 41 41 H 1.08999 * 109.50141 * 182.43551 * 25 16 15 42 42 H 1.08998 * 109.46468 * 294.17906 * 26 13 2 43 43 H 1.09003 * 109.46433 * 54.15473 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5437 -0.6360 -1.2999 6 1 4.0819 -0.1194 -0.5189 7 6 4.2324 -1.2174 -2.3432 8 7 3.5770 -1.8461 -3.2944 9 14 6.0965 -1.1123 -2.4056 10 1 6.6693 -1.7546 -1.1953 11 1 6.5914 -1.8123 -3.6182 12 1 6.5106 0.3130 -2.4525 13 7 2.0196 -0.6925 1.1994 14 6 1.7660 0.1035 2.4071 15 6 2.4156 -0.5772 3.6141 16 6 1.8328 -1.9839 3.7756 17 6 2.5116 -2.6813 4.9262 18 6 3.7327 -3.3900 4.8818 19 6 3.9045 -3.8271 6.1676 20 6 5.0265 -4.6281 6.6886 21 8 5.9237 -4.9724 5.9453 22 8 5.0573 -4.9785 7.9897 23 8 2.8437 -3.3722 6.8614 24 7 2.0901 -2.7435 6.1557 25 6 2.0662 -2.7770 2.4868 26 6 1.4280 -2.0318 1.3122 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.7363 -1.7675 -1.2141 31 1 1.6192 -0.2505 -2.1377 32 1 4.0616 -2.2555 -4.0283 33 1 0.6913 0.1835 2.5702 34 1 2.1892 1.1000 2.2808 35 1 2.2139 0.0057 4.5127 36 1 3.4924 -0.6451 3.4584 37 1 0.7628 -1.9145 3.9717 38 1 4.3789 -3.5510 4.0316 39 1 5.8136 -5.5037 8.2850 40 1 3.1372 -2.8805 2.3122 41 1 1.6151 -3.7648 2.5807 42 1 0.3549 -1.9418 1.4805 43 1 1.6059 -2.5862 0.3908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592470037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:50 Heat of formation + Delta-G solvation = -31.221935 kcal Electronic energy + Delta-G solvation = -25646.302059 eV Core-core repulsion = 21887.684110 eV Total energy + Delta-G solvation = -3758.617948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.31815 -40.47967 -39.20203 -36.70826 -36.02726 -33.58401 -32.51828 -32.16491 -30.67251 -29.55261 -27.30742 -25.54126 -25.02656 -23.37679 -23.17437 -22.40882 -20.96485 -20.03707 -18.75963 -18.53624 -18.12567 -18.05041 -16.31173 -16.15649 -15.92781 -15.62357 -14.69222 -14.52923 -14.35297 -14.08181 -14.01957 -13.69191 -13.63198 -13.19997 -12.74017 -12.21597 -12.13694 -12.02283 -11.94087 -11.72954 -11.52106 -11.32175 -11.21177 -11.01561 -10.87548 -10.72397 -10.59848 -10.38929 -10.23516 -10.16538 -10.01992 -9.78570 -9.17490 -8.98176 -8.25586 -7.49639 -5.88882 -3.86655 0.29111 1.76604 1.98211 2.30175 2.96601 3.40897 3.45044 3.48379 3.72599 4.34327 4.47069 4.56735 4.64253 4.80087 4.91423 4.97244 5.13240 5.34251 5.44412 5.48219 5.59894 5.65005 5.70585 5.76502 5.81069 5.84053 5.91489 5.95209 6.00672 6.02754 6.20256 6.27910 6.38437 6.51215 6.58543 6.70642 6.97301 7.24598 7.52571 7.66626 7.81546 7.89676 8.00657 8.12322 8.58004 9.19189 9.75178 11.23065 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.003703 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.058963 B = 7558.912086 C = 9110.281063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.510 5.510 14 C 0.055 3.945 15 C -0.104 4.104 16 C -0.011 4.011 17 C 0.030 3.970 18 C -0.119 4.119 19 C -0.084 4.084 20 C 0.579 3.421 21 O -0.482 6.482 22 O -0.501 6.501 23 O 0.132 5.868 24 N -0.337 5.337 25 C -0.108 4.108 26 C 0.058 3.942 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.258 0.742 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.191 0.809 39 H 0.423 0.577 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -3.535 20.149 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.074 4.074 15 C -0.143 4.143 16 C -0.031 4.031 17 C -0.127 4.127 18 C -0.140 4.140 19 C -0.148 4.148 20 C 0.419 3.581 21 O -0.369 6.369 22 O -0.313 6.313 23 O 0.056 5.944 24 N -0.035 5.035 25 C -0.147 4.147 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.208 0.792 39 H 0.283 0.717 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.918 -3.068 20.214 20.652 hybrid contribution 1.236 -0.485 -0.317 1.365 sum -1.682 -3.553 19.896 20.281 Atomic orbital electron populations 1.22528 0.99785 1.01345 1.00670 1.21912 0.90014 0.98335 0.91794 0.91237 1.19193 0.96379 0.95292 0.89799 1.21126 0.91626 1.33423 1.06696 0.92168 1.24992 0.97923 0.95922 0.95956 1.69949 1.35260 1.37264 1.12051 0.86718 0.86483 0.77988 0.77105 1.20360 1.21687 1.20529 1.62048 1.58429 1.01687 1.01187 1.22045 0.97437 0.97409 0.90463 1.21620 1.01675 0.93239 0.97755 1.19781 0.99047 0.94918 0.89340 1.23776 0.94635 1.00675 0.93653 1.23033 0.97428 0.96788 0.96785 1.22658 0.93078 1.06598 0.92483 1.18734 0.82586 0.76382 0.80373 1.91036 1.35703 1.51505 1.58612 1.84611 1.51968 1.68452 1.26232 1.85076 1.24685 1.49999 1.34674 1.73767 1.14133 1.10756 1.04852 1.21688 1.03131 0.97599 0.92266 1.22057 0.94971 0.91198 0.98801 0.92820 0.94204 0.92540 0.96307 0.96395 0.93272 0.95555 0.90797 0.91943 0.90450 0.89540 0.79184 0.71694 0.90132 0.91667 0.95613 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.44 37.16 0.31 -2.72 16 2 C 0.09 1.69 2.26 -67.72 -0.15 1.54 16 3 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 4 C 0.03 0.74 4.37 -27.89 -0.12 0.62 16 5 C -0.49 -13.36 8.81 -34.44 -0.30 -13.66 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -8.98 4.29 -226.69 -0.97 -9.95 16 14 C 0.05 0.79 5.14 -3.83 -0.02 0.77 16 15 C -0.10 -1.34 5.36 -26.65 -0.14 -1.48 16 16 C -0.01 -0.14 2.72 -91.65 -0.25 -0.39 16 17 C 0.03 0.36 6.20 -82.17 -0.51 -0.15 16 18 C -0.12 -1.37 10.12 -38.92 -0.39 -1.76 16 19 C -0.08 -0.92 7.37 -36.35 -0.27 -1.19 16 20 C 0.58 5.63 8.33 34.45 0.29 5.92 16 21 O -0.48 -5.90 17.70 -19.26 -0.34 -6.24 16 22 O -0.50 -3.27 13.44 -41.44 -0.56 -3.83 16 23 O 0.13 1.56 11.23 15.48 0.17 1.73 16 24 N -0.34 -4.32 12.04 33.52 0.40 -3.92 16 25 C -0.11 -1.47 5.05 -26.65 -0.13 -1.61 16 26 C 0.06 0.93 4.53 -3.83 -0.02 0.92 16 27 H 0.05 0.87 6.45 -51.93 -0.34 0.54 16 28 H 0.04 0.58 6.84 -51.93 -0.35 0.22 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.49 6.28 -51.93 -0.33 0.16 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.03 0.36 6.89 -51.93 -0.36 0.00 16 34 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.19 2.04 7.60 -52.49 -0.40 1.64 16 39 H 0.42 0.59 9.11 45.56 0.42 1.00 16 40 H 0.08 1.16 7.37 -51.93 -0.38 0.78 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.39 6.57 -51.93 -0.34 0.05 16 43 H 0.09 1.77 6.17 -51.93 -0.32 1.45 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -31.95 351.18 -7.41 -39.36 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.31 Total: -1.26 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.81 Total: -11.84 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.17 Total: -39.99 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.72 Total: -8.34 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.95 -7.41 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.138 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds