Wall clock time and date at job start Tue Mar 31 2020 09:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.62722 * 2 1 4 4 C 1.53236 * 109.63127 * 239.40956 * 2 1 3 5 5 N 1.46900 * 109.33980 * 186.45589 * 4 2 1 6 6 C 1.46896 * 111.00238 * 187.25404 * 5 4 2 7 7 C 1.50694 * 109.47619 * 170.00324 * 6 5 4 8 8 C 1.35175 * 125.60969 * 89.99845 * 7 6 5 9 9 C 1.40304 * 107.12791 * 180.02562 * 8 7 6 10 10 C 1.36646 * 106.70511 * 0.02562 * 9 8 7 11 11 C 1.46463 * 125.99914 * 180.02562 * 10 9 8 12 12 O 1.21628 * 120.00123 * 0.02562 * 11 10 9 13 13 O 1.34893 * 120.00168 * 180.02562 * 11 10 9 14 14 O 1.33907 * 125.61026 * 269.69941 * 7 6 5 15 15 C 1.46906 * 111.26583 * 63.10729 * 5 4 2 16 16 C 1.53695 * 109.25637 * 296.75521 * 15 5 4 17 17 H 1.08998 * 109.79545 * 294.41976 * 16 15 5 18 18 C 1.53007 * 109.69801 * 173.68718 * 16 15 5 19 19 N 1.47078 * 108.27730 * 54.08198 * 16 15 5 20 20 C 1.36939 * 120.88149 * 128.75077 * 19 16 15 21 21 H 1.07998 * 120.00006 * 305.88109 * 20 19 16 22 22 C 1.38813 * 119.99748 * 125.87639 * 20 19 16 23 23 N 1.31619 * 120.00092 * 343.45086 * 22 20 19 24 24 Si 1.86802 * 119.99814 * 163.45197 * 22 20 19 25 25 H 1.48496 * 109.46983 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47031 * 300.00101 * 24 22 20 27 27 H 1.48496 * 109.47186 * 60.00074 * 24 22 20 28 28 H 1.08992 * 109.47383 * 299.61798 * 1 2 3 29 29 H 1.08998 * 109.47157 * 59.61942 * 1 2 3 30 30 H 1.09007 * 109.46821 * 179.61754 * 1 2 3 31 31 H 1.09000 * 109.49561 * 306.42196 * 4 2 1 32 32 H 1.09003 * 109.49466 * 66.50459 * 4 2 1 33 33 H 1.09003 * 109.47323 * 290.00892 * 6 5 4 34 34 H 1.09005 * 109.47216 * 50.00316 * 6 5 4 35 35 H 1.07996 * 126.43444 * 359.97438 * 8 7 6 36 36 H 1.08004 * 126.65383 * 179.97438 * 9 8 7 37 37 H 0.96702 * 117.00776 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.49056 * 56.85523 * 15 5 4 39 39 H 1.08999 * 109.49169 * 176.90754 * 15 5 4 40 40 H 1.08994 * 109.46971 * 300.49929 * 18 16 15 41 41 H 1.09000 * 109.47020 * 60.50809 * 18 16 15 42 42 H 1.09002 * 109.46676 * 180.49920 * 18 16 15 43 43 H 0.96997 * 119.99839 * 175.41010 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7345 -1.2424 5 7 3.5055 -0.8663 -1.1592 6 6 4.0570 -1.4104 -2.4073 7 6 5.5599 -1.3032 -2.3813 8 6 6.4078 -2.2426 -1.9061 9 6 7.7094 -1.7449 -2.0694 10 6 7.5889 -0.5106 -2.6431 11 6 8.6920 0.3844 -2.9997 12 8 9.8413 0.0474 -2.7880 13 8 8.4334 1.5825 -3.5630 14 8 6.2754 -0.2642 -2.8304 15 6 3.9017 -1.6870 -0.0069 16 6 3.4638 -0.9861 1.2889 17 1 4.0151 -0.0534 1.4086 18 6 3.7293 -1.9019 2.4856 19 7 2.0241 -0.7006 1.1951 20 6 1.1671 -1.0722 2.1965 21 1 1.1392 -2.0990 2.5300 22 6 0.3344 -0.1291 2.7830 23 7 0.5800 1.1544 2.6254 24 14 -1.1347 -0.6814 3.7959 25 1 -1.8585 0.5096 4.3085 26 1 -2.0477 -1.4868 2.9454 27 1 -0.6663 -1.5063 4.9384 28 1 -0.3634 0.5078 0.8933 29 1 -0.3633 0.5197 -0.8865 30 1 -0.3633 -1.0277 -0.0069 31 1 1.5925 -1.7249 -1.2930 32 1 1.7812 -0.1677 -2.1354 33 1 3.7690 -2.4570 -2.5061 34 1 3.6671 -0.8449 -3.2538 35 1 6.1346 -3.1965 -1.4799 36 1 8.6286 -2.2408 -1.7943 37 1 9.1939 2.1388 -3.7805 38 1 3.4234 -2.6641 -0.0748 39 1 4.9845 -1.8114 -0.0041 40 1 3.1726 -2.8308 2.3628 41 1 4.7952 -2.1221 2.5452 42 1 3.4094 -1.4048 3.4014 43 1 -0.0381 1.8133 2.9785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594536601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:37 Heat of formation + Delta-G solvation = -35.734604 kcal Electronic energy + Delta-G solvation = -26157.471470 eV Core-core repulsion = 22398.657838 eV Total energy + Delta-G solvation = -3758.813632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.85628 -40.10081 -38.52229 -36.39831 -35.24986 -33.23636 -32.76917 -31.80702 -30.39526 -27.88364 -26.90955 -25.93727 -24.69089 -23.54851 -21.91910 -21.42735 -20.55924 -20.22352 -19.13344 -18.61503 -17.74785 -16.78670 -16.24150 -15.78544 -15.50693 -15.03316 -14.55139 -14.51307 -14.30692 -13.88933 -13.79578 -13.49604 -13.29603 -13.11744 -12.85278 -12.43549 -12.03986 -11.87717 -11.75216 -11.56042 -11.37917 -11.19455 -11.09613 -10.85184 -10.65513 -10.51947 -10.38472 -10.18645 -10.15236 -9.85201 -9.78905 -9.48228 -8.77036 -8.12095 -7.95484 -6.35338 -5.70454 -3.56906 0.67940 2.08377 2.27829 2.73176 3.05988 3.32350 3.38990 3.40857 4.26318 4.43231 4.57589 4.72248 4.95113 5.18179 5.24482 5.29439 5.35064 5.42291 5.66796 5.72653 5.77974 5.83980 6.01071 6.09363 6.12366 6.17697 6.19044 6.31086 6.42478 6.45599 6.58698 6.68987 6.78973 6.81162 6.94139 7.13834 7.18739 7.40026 7.49143 7.58831 7.60590 7.73588 7.88745 8.61810 9.21856 9.73488 10.53418 11.18157 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.003288 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.979217 B = 8514.172825 C = 8666.667223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.200 3.800 3 H 0.038 0.962 4 C 0.045 3.955 5 N -0.530 5.530 6 C 0.119 3.881 7 C 0.069 3.931 8 C -0.227 4.227 9 C -0.094 4.094 10 C -0.082 4.082 11 C 0.576 3.424 12 O -0.502 6.502 13 O -0.503 6.503 14 O -0.140 6.140 15 C 0.041 3.959 16 C 0.173 3.827 17 H 0.032 0.968 18 C -0.129 4.129 19 N -0.579 5.579 20 C -0.261 4.261 21 H 0.051 0.949 22 C 0.035 3.965 23 N -0.875 5.875 24 Si 0.884 3.116 25 H -0.289 1.289 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.096 0.904 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.417 0.583 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -4.320 -11.629 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.093 3.907 3 H 0.055 0.945 4 C -0.084 4.084 5 N -0.254 5.254 6 C -0.009 4.009 7 C 0.015 3.985 8 C -0.246 4.246 9 C -0.114 4.114 10 C -0.133 4.133 11 C 0.421 3.579 12 O -0.392 6.392 13 O -0.315 6.315 14 O -0.034 6.034 15 C -0.088 4.088 16 C 0.067 3.933 17 H 0.050 0.950 18 C -0.187 4.187 19 N -0.304 5.304 20 C -0.391 4.391 21 H 0.069 0.931 22 C -0.167 4.167 23 N -0.515 5.515 24 Si 0.712 3.288 25 H -0.215 1.215 26 H -0.205 1.205 27 H -0.204 1.204 28 H 0.115 0.885 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.276 0.724 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.127 -3.728 -11.416 15.709 hybrid contribution -0.521 -0.711 0.283 0.925 sum 9.607 -4.439 -11.133 15.360 Atomic orbital electron populations 1.22044 0.95615 1.00785 1.01895 1.20284 0.92861 0.93920 0.83625 0.94466 1.22920 0.84707 0.99706 1.01030 1.61906 1.12419 1.50347 1.00770 1.20695 0.84213 1.00068 0.95877 1.22972 0.94735 0.84960 0.95833 1.21635 0.91558 1.02770 1.08675 1.21940 0.99442 0.92677 0.97355 1.20499 0.81482 0.97301 1.13984 1.18854 0.85937 0.79409 0.73740 1.90992 1.20641 1.75268 1.52325 1.84699 1.44064 1.28983 1.73712 1.84128 1.16050 1.39941 1.63300 1.22947 0.99121 0.94547 0.92159 1.20617 0.87424 0.95036 0.90249 0.95041 1.21682 0.97985 0.99609 0.99433 1.44042 1.00504 1.68337 1.17483 1.18635 1.16567 0.91694 1.12241 0.93147 1.25563 1.00172 0.95202 0.95780 1.70132 1.34894 0.99616 1.46814 0.86720 0.83492 0.77905 0.80719 1.21500 1.20535 1.20449 0.88531 0.95858 0.94053 0.95079 0.91930 0.91333 0.88828 0.82273 0.81928 0.72386 0.95122 0.91721 0.93255 0.94637 0.91570 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.11 37.16 0.30 -2.89 16 2 C 0.20 4.45 3.12 -67.49 -0.21 4.24 16 3 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.05 0.81 4.91 -3.70 -0.02 0.79 16 5 N -0.53 -9.01 4.62 -235.47 -1.09 -10.10 16 6 C 0.12 1.57 5.50 -4.98 -0.03 1.54 16 7 C 0.07 0.93 6.22 -35.40 -0.22 0.71 16 8 C -0.23 -2.69 9.17 -39.90 -0.37 -3.06 16 9 C -0.09 -1.13 10.62 -39.38 -0.42 -1.55 16 10 C -0.08 -1.11 7.18 -36.85 -0.26 -1.37 16 11 C 0.58 7.17 8.30 34.04 0.28 7.46 16 12 O -0.50 -6.98 17.65 -19.36 -0.34 -7.32 16 13 O -0.50 -5.02 13.44 -42.46 -0.57 -5.59 16 14 O -0.14 -2.05 10.67 4.73 0.05 -2.00 16 15 C 0.04 0.72 4.75 -3.46 -0.02 0.71 16 16 C 0.17 3.67 3.68 -67.25 -0.25 3.42 16 17 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.13 -2.49 8.20 37.16 0.30 -2.19 16 19 N -0.58 -13.82 2.80 -156.73 -0.44 -14.26 16 20 C -0.26 -6.71 6.91 -15.06 -0.10 -6.82 16 21 H 0.05 1.32 7.18 -52.49 -0.38 0.94 16 22 C 0.03 0.91 3.34 -17.43 -0.06 0.85 16 23 N -0.87 -24.22 11.74 55.49 0.65 -23.57 16 24 Si 0.88 20.46 29.59 -169.99 -5.03 15.43 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.10 2.40 4.43 -51.93 -0.23 2.17 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 33 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.09 1.12 7.97 -51.93 -0.41 0.71 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.42 1.85 9.11 45.56 0.42 2.26 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.03 5.90 -51.93 -0.31 0.73 16 40 H 0.05 0.94 7.59 -51.93 -0.39 0.55 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.42 7.68 -51.93 -0.40 1.02 16 43 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -30.74 349.11 -8.04 -38.79 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.48 Total: 1.52 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.06 Total: 1.85 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.88 Total: -47.93 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.86 Total: -14.92 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.74 -8.04 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594536601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.052 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds