Wall clock time and date at job start Tue Mar 31 2020 09:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.78252 * 2 1 4 4 C 1.53242 * 109.62703 * 120.48446 * 2 1 3 5 5 N 1.46893 * 109.36276 * 65.89461 * 4 2 1 6 6 C 1.46904 * 111.00131 * 187.24028 * 5 4 2 7 7 C 1.50695 * 109.47056 * 169.99447 * 6 5 4 8 8 C 1.35178 * 125.60559 * 89.72363 * 7 6 5 9 9 C 1.40305 * 107.12542 * 179.85056 * 8 7 6 10 10 C 1.36645 * 106.70285 * 0.40173 * 9 8 7 11 11 C 1.46467 * 125.99556 * 179.73548 * 10 9 8 12 12 O 1.21625 * 119.99984 * 359.97438 * 11 10 9 13 13 O 1.34892 * 120.00034 * 180.02562 * 11 10 9 14 14 O 1.33907 * 125.61648 * 270.02599 * 7 6 5 15 15 C 1.46901 * 111.27275 * 63.08780 * 5 4 2 16 16 C 1.53236 * 109.33751 * 296.89699 * 15 5 4 17 17 H 1.08998 * 109.63076 * 293.92088 * 16 15 5 18 18 C 1.52999 * 109.62577 * 173.53294 * 16 15 5 19 19 N 1.47084 * 108.52226 * 53.83146 * 16 15 5 20 20 C 1.36936 * 120.88574 * 128.85510 * 19 16 15 21 21 H 1.08004 * 119.99309 * 333.40160 * 20 19 16 22 22 C 1.38806 * 120.00505 * 153.41170 * 20 19 16 23 23 N 1.31624 * 119.99788 * 342.96697 * 22 20 19 24 24 Si 1.86796 * 120.00163 * 162.96528 * 22 20 19 25 25 H 1.48499 * 109.47003 * 89.99946 * 24 22 20 26 26 H 1.48504 * 109.47091 * 209.99768 * 24 22 20 27 27 H 1.48498 * 109.47353 * 329.99907 * 24 22 20 28 28 H 1.09004 * 109.46915 * 299.51788 * 1 2 3 29 29 H 1.09000 * 109.46712 * 59.51609 * 1 2 3 30 30 H 1.08992 * 109.47121 * 179.51596 * 1 2 3 31 31 H 1.09000 * 109.48986 * 305.91764 * 4 2 1 32 32 H 1.09003 * 109.48881 * 185.86918 * 4 2 1 33 33 H 1.08996 * 109.47108 * 290.00028 * 6 5 4 34 34 H 1.09001 * 109.46786 * 50.00189 * 6 5 4 35 35 H 1.07998 * 126.43443 * 359.95248 * 8 7 6 36 36 H 1.08001 * 126.64794 * 180.14193 * 9 8 7 37 37 H 0.96703 * 117.00126 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.48697 * 56.85496 * 15 5 4 39 39 H 1.08991 * 109.49207 * 176.90681 * 15 5 4 40 40 H 1.09001 * 109.47002 * 60.00149 * 18 16 15 41 41 H 1.08996 * 109.47234 * 179.97438 * 18 16 15 42 42 H 1.09001 * 109.47507 * 300.00686 * 18 16 15 43 43 H 0.96999 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7322 1.2439 5 7 1.6752 -2.1515 1.1613 6 6 1.9989 -2.8534 2.4106 7 6 1.3898 -4.2315 2.3848 8 6 1.9859 -5.3466 1.9065 9 6 1.0795 -6.4042 2.0750 10 6 -0.0421 -5.8729 2.6467 11 6 -1.2582 -6.6081 3.0017 12 8 -1.3299 -7.8035 2.7893 13 8 -2.2990 -5.9592 3.5631 14 8 0.1670 -4.5521 2.8265 15 6 2.3153 -2.8028 0.0105 16 6 1.8110 -2.1559 -1.2838 17 1 0.7489 -2.3664 -1.4088 18 6 2.5898 -2.7163 -2.4756 19 7 2.0237 -0.7033 -1.1938 20 6 2.6638 -0.0232 -2.1952 21 1 3.3765 -0.5346 -2.8253 22 6 2.3969 1.3235 -2.4003 23 7 1.3158 1.8666 -1.8819 24 14 3.5721 2.3650 -3.4121 25 1 3.1672 2.3223 -4.8402 26 1 3.5320 3.7683 -2.9280 27 1 4.9512 1.8324 -3.2724 28 1 -0.3633 0.5063 0.8943 29 1 -0.3633 0.5213 -0.8856 30 1 -0.3633 -1.0276 -0.0087 31 1 1.5992 -0.2916 2.1357 32 1 3.1297 -0.6413 1.2965 33 1 3.0810 -2.9361 2.5110 34 1 1.5972 -2.2945 3.2558 35 1 2.9747 -5.4114 1.4771 36 1 1.2361 -7.4372 1.8015 37 1 -3.0801 -6.4867 3.7796 38 1 3.3965 -2.6830 0.0799 39 1 2.0663 -3.8639 0.0083 40 1 2.4444 -3.7952 -2.5298 41 1 2.2289 -2.2549 -3.3948 42 1 3.6506 -2.4985 -2.3514 43 1 1.1292 2.8075 -2.0256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594536605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:41 Heat of formation + Delta-G solvation = -54.782360 kcal Electronic energy + Delta-G solvation = -26286.536387 eV Core-core repulsion = 22526.896782 eV Total energy + Delta-G solvation = -3759.639605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.81248 -41.01207 -40.10380 -37.27073 -36.64532 -34.29477 -34.17128 -33.37486 -31.57884 -29.69715 -28.13508 -27.54839 -25.96904 -24.88186 -23.31490 -22.68296 -22.26317 -21.45881 -20.32628 -19.51714 -18.66818 -18.10858 -17.64311 -17.22021 -16.57063 -16.47099 -15.95975 -15.85727 -15.66051 -15.15910 -14.87285 -14.73678 -14.63185 -14.19068 -13.99311 -13.84703 -13.50982 -13.34875 -13.09974 -12.81296 -12.74562 -12.72318 -12.41699 -12.28928 -12.19709 -12.18401 -12.13559 -11.88096 -11.62135 -11.23684 -11.07647 -10.99447 -10.42971 -9.74945 -9.23101 -8.51306 -7.74681 -5.16840 -0.27034 1.15197 1.39769 1.49332 1.52185 1.59587 1.80625 2.21636 2.57499 3.06188 3.39598 3.59699 3.64538 3.85076 4.07423 4.22284 4.27064 4.33425 4.43834 4.52895 4.62181 4.63403 4.64610 4.76721 4.80643 4.85864 4.88998 4.89586 5.00709 5.11328 5.25959 5.28386 5.34301 5.36219 5.44540 5.55518 5.74130 5.79059 5.88088 6.01252 6.18874 6.22871 6.51656 6.83204 7.28539 7.99059 8.52142 9.30386 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.003378 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.866051 B = 8286.668902 C = 8560.209318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.194 3.806 3 H 0.062 0.938 4 C 0.057 3.943 5 N -0.540 5.540 6 C 0.122 3.878 7 C 0.053 3.947 8 C -0.217 4.217 9 C -0.091 4.091 10 C -0.104 4.104 11 C 0.580 3.420 12 O -0.522 6.522 13 O -0.503 6.503 14 O -0.159 6.159 15 C 0.056 3.944 16 C 0.163 3.837 17 H 0.008 0.992 18 C -0.129 4.129 19 N -0.599 5.599 20 C -0.250 4.250 21 H 0.073 0.927 22 C -0.049 4.049 23 N -0.924 5.924 24 Si 0.955 3.045 25 H -0.292 1.292 26 H -0.297 1.297 27 H -0.273 1.273 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.183 0.817 36 H 0.181 0.819 37 H 0.439 0.561 38 H 0.036 0.964 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -14.623 11.575 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.080 0.920 4 C -0.071 4.071 5 N -0.265 5.265 6 C -0.005 4.005 7 C -0.001 4.001 8 C -0.236 4.236 9 C -0.110 4.110 10 C -0.154 4.154 11 C 0.425 3.575 12 O -0.415 6.415 13 O -0.318 6.318 14 O -0.054 6.054 15 C -0.073 4.073 16 C 0.057 3.943 17 H 0.025 0.975 18 C -0.187 4.187 19 N -0.323 5.323 20 C -0.380 4.380 21 H 0.090 0.910 22 C -0.245 4.245 23 N -0.570 5.570 24 Si 0.785 3.215 25 H -0.220 1.220 26 H -0.224 1.224 27 H -0.199 1.199 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.200 0.800 36 H 0.199 0.801 37 H 0.302 0.698 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.158 -14.371 11.477 18.392 hybrid contribution 0.467 0.639 -0.608 0.999 sum 0.625 -13.731 10.869 17.524 Atomic orbital electron populations 1.21755 0.98241 0.98490 0.99306 1.20327 0.92304 0.94840 0.83777 0.91952 1.22599 0.97700 0.87199 0.99645 1.61787 1.59959 1.02500 1.02228 1.20747 0.98714 0.86844 0.94151 1.23115 0.82328 0.97805 0.96828 1.21935 1.03612 0.90703 1.07372 1.22261 0.90506 1.02032 0.96231 1.20853 0.97206 0.82354 1.14954 1.18800 0.81525 0.83724 0.73416 1.90979 1.81872 1.15261 1.53359 1.84662 1.27476 1.46494 1.73122 1.84099 1.32627 1.24362 1.64339 1.22602 0.95987 0.98247 0.90464 1.20623 0.95635 0.84382 0.93629 0.97473 1.21706 0.99837 0.99840 0.97283 1.44545 1.66897 1.02449 1.18395 1.19468 1.15620 0.92653 1.10294 0.90973 1.25627 0.97880 0.99806 1.01137 1.70180 1.25127 1.11677 1.50030 0.85461 0.79649 0.78122 0.78250 1.21967 1.22396 1.19853 0.94514 0.94606 0.95018 0.89885 0.95271 0.88913 0.87761 0.79960 0.80137 0.69807 0.94614 0.89596 0.90867 0.94108 0.92865 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.97 71.98 0.65 -4.76 16 2 C 0.19 8.78 2.35 44.96 0.11 8.88 16 3 H 0.06 3.26 6.12 -2.39 -0.01 3.25 16 4 C 0.06 1.99 5.01 86.39 0.43 2.42 16 5 N -0.54 -16.72 4.12 -899.84 -3.71 -20.43 16 6 C 0.12 2.80 5.50 85.55 0.47 3.27 16 7 C 0.05 1.25 6.23 24.98 0.16 1.40 16 8 C -0.22 -4.29 9.15 22.07 0.20 -4.09 16 9 C -0.09 -1.89 10.62 22.40 0.24 -1.65 16 10 C -0.10 -2.56 7.18 24.04 0.17 -2.39 16 11 C 0.58 13.47 8.30 69.97 0.58 14.05 16 12 O -0.52 -13.70 17.65 19.43 0.34 -13.35 16 13 O -0.50 -9.17 13.44 -56.69 -0.76 -9.93 16 14 O -0.16 -4.31 10.67 -4.77 -0.05 -4.36 16 15 C 0.06 1.76 4.72 86.38 0.41 2.17 16 16 C 0.16 6.50 3.25 44.96 0.15 6.65 16 17 H 0.01 0.34 7.62 -2.39 -0.02 0.32 16 18 C -0.13 -4.52 7.93 71.98 0.57 -3.95 16 19 N -0.60 -28.38 2.73 -650.62 -1.78 -30.15 16 20 C -0.25 -13.02 8.72 84.03 0.73 -12.29 16 21 H 0.07 3.65 6.16 -2.91 -0.02 3.64 16 22 C -0.05 -2.64 4.93 84.86 0.42 -2.23 16 23 N -0.92 -52.38 9.76 21.65 0.21 -52.16 16 24 Si 0.96 43.97 29.59 68.60 2.03 46.00 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.88 6.87 -2.39 -0.02 1.86 16 30 H 0.03 1.41 7.07 -2.39 -0.02 1.39 16 31 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 34 H 0.10 2.17 7.97 -2.39 -0.02 2.15 16 35 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.44 3.05 9.11 -74.06 -0.67 2.38 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 2.35 5.89 -2.39 -0.01 2.33 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 42 H 0.05 1.85 7.54 -2.39 -0.02 1.83 16 43 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -67.11 347.21 1.92 -65.19 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.36 Total: 11.73 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 5.28 Total: 7.47 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -5.28 Total: -102.74 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.47 Total: -27.65 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.11 1.92 -65.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594536605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.407 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds