Wall clock time and date at job start Tue Mar 31 2020 10:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47375 * 2 1 4 4 C 1.36943 * 119.99706 * 274.04464 * 3 2 1 5 5 H 1.08001 * 119.99900 * 173.95175 * 4 3 2 6 6 C 1.38805 * 119.99967 * 353.96577 * 4 3 2 7 7 N 1.31615 * 120.00381 * 34.09095 * 6 4 3 8 8 Si 1.86803 * 119.99951 * 214.09697 * 6 4 3 9 9 H 1.48497 * 109.47402 * 84.99208 * 8 6 4 10 10 H 1.48495 * 109.47504 * 204.99902 * 8 6 4 11 11 H 1.48509 * 109.46970 * 324.99518 * 8 6 4 12 12 C 1.46501 * 120.00543 * 94.04471 * 3 2 1 13 13 H 1.09004 * 109.47360 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47011 * 300.00265 * 12 3 2 15 15 C 1.50703 * 109.46915 * 59.99929 * 12 3 2 16 16 O 1.21410 * 120.00038 * 345.00413 * 15 12 3 17 17 C 1.41552 * 119.99593 * 165.00214 * 15 12 3 18 18 N 1.38007 * 125.97801 * 0.02562 * 17 15 12 19 19 H 0.96996 * 125.37045 * 0.02562 * 18 17 15 20 20 C 1.34113 * 109.26629 * 179.75332 * 18 17 15 21 21 C 1.50699 * 125.65924 * 180.22224 * 20 18 17 22 22 C 1.38417 * 108.68103 * 0.24553 * 20 18 17 23 23 C 1.47276 * 126.40652 * 179.97438 * 22 20 18 24 24 O 1.21529 * 120.00134 * 90.02366 * 23 22 20 25 25 O 1.34757 * 120.00296 * 270.02638 * 23 22 20 26 26 C 1.37818 * 125.97425 * 180.20265 * 17 15 12 27 27 C 1.50697 * 126.59222 * 359.97438 * 26 17 15 28 28 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46973 * 299.99880 * 1 2 3 30 30 H 1.08997 * 109.47010 * 60.00384 * 1 2 3 31 31 H 1.09002 * 109.47317 * 239.99723 * 2 1 3 32 32 H 1.09005 * 109.47252 * 119.99827 * 2 1 3 33 33 H 0.97010 * 120.00041 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47123 * 300.00004 * 14 12 3 35 35 H 1.09004 * 109.46929 * 59.99894 * 14 12 3 36 36 H 1.08994 * 109.47362 * 179.97438 * 14 12 3 37 37 H 1.08994 * 109.46816 * 90.02976 * 21 20 18 38 38 H 1.09000 * 109.46859 * 210.02604 * 21 20 18 39 39 H 1.09001 * 109.46746 * 330.02455 * 21 20 18 40 40 H 0.96698 * 116.99977 * 179.97438 * 25 23 22 41 41 H 1.08998 * 109.46977 * 270.30528 * 27 26 17 42 42 H 1.09002 * 109.46983 * 30.31032 * 27 26 17 43 43 H 1.09005 * 109.47141 * 150.30704 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4335 3.1014 -1.1787 6 6 1.9774 1.3918 -2.3877 7 7 1.0745 0.4386 -2.4789 8 14 3.0030 1.8526 -3.8795 9 1 4.2917 1.1158 -3.8410 10 1 2.2650 1.4947 -5.1173 11 1 3.2677 3.3138 -3.8660 12 6 2.3470 2.0421 1.2655 13 1 2.6906 3.0573 1.0668 14 6 1.1023 2.0902 2.1540 15 6 3.4354 1.2711 1.9670 16 8 3.7034 0.1410 1.6133 17 6 4.1452 1.8646 3.0383 18 7 3.9434 3.1343 3.5398 19 1 3.2870 3.7693 3.2131 20 6 4.7940 3.3498 4.5541 21 6 4.8868 4.6139 5.3692 22 6 5.5727 2.2187 4.7276 23 6 6.6329 2.0332 5.7329 24 8 6.3616 1.5721 6.8241 25 8 7.9038 2.3748 5.4429 26 6 5.1611 1.2766 3.7606 27 6 5.7205 -0.1083 3.5606 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.9417 -0.0249 -3.3208 34 1 0.3151 2.6477 1.6466 35 1 0.7584 1.0751 2.3527 36 1 1.3468 2.5814 3.0957 37 1 4.2172 4.5435 6.2263 38 1 5.9109 4.7467 5.7182 39 1 4.5997 5.4657 4.7527 40 1 8.5647 2.2350 6.1347 41 1 5.1629 -0.8172 4.1726 42 1 5.6331 -0.3873 2.5105 43 1 6.7702 -0.1220 3.8541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:57 Heat of formation + Delta-G solvation = -53.953594 kcal Electronic energy + Delta-G solvation = -26322.979758 eV Core-core repulsion = 22563.376091 eV Total energy + Delta-G solvation = -3759.603667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.80178 -39.86262 -38.66906 -36.10111 -35.84999 -33.13749 -32.59278 -31.69140 -30.02676 -28.58867 -28.26104 -26.88221 -24.64433 -24.11179 -22.63978 -21.24144 -20.37159 -19.65558 -19.01311 -18.01984 -17.13566 -16.71055 -16.13828 -15.56822 -15.31147 -15.06827 -14.55600 -14.25259 -14.02021 -13.64334 -13.41129 -13.27215 -13.20581 -13.02071 -12.88653 -12.41624 -12.26812 -12.14786 -11.97381 -11.84749 -11.71817 -11.53972 -11.45147 -11.09330 -10.87766 -10.84675 -10.65162 -10.33964 -9.97481 -9.67876 -9.51725 -8.97540 -8.81031 -8.17974 -8.13521 -6.96977 -5.87282 -3.03010 1.26932 2.01414 2.04509 2.80969 3.27020 3.40373 3.42918 3.49588 3.52673 4.41282 4.45105 4.67287 4.74094 5.02867 5.16561 5.19280 5.25731 5.32756 5.42113 5.50914 5.60939 5.69960 5.82643 5.85826 5.90627 6.04126 6.10101 6.22930 6.32950 6.35756 6.56355 6.65219 6.77996 6.79573 7.01960 7.14951 7.21683 7.26156 7.68530 7.79348 7.89040 8.15038 8.18913 8.33704 9.20348 9.83805 10.29267 11.17619 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.003800 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.385157 B = 7365.901666 C = 7543.596770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 N -0.577 5.577 4 C -0.271 4.271 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.872 5.872 8 Si 0.875 3.125 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.136 3.864 13 H 0.081 0.919 14 C -0.158 4.158 15 C 0.394 3.606 16 O -0.431 6.431 17 C -0.068 4.068 18 N -0.508 5.508 19 H 0.426 0.574 20 C 0.108 3.892 21 C -0.097 4.097 22 C -0.222 4.222 23 C 0.569 3.431 24 O -0.510 6.510 25 O -0.510 6.510 26 C -0.032 4.032 27 C -0.096 4.096 28 H 0.018 0.982 29 H 0.014 0.986 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.408 0.592 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 7.212 15.897 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 N -0.297 5.297 4 C -0.398 4.398 5 H 0.094 0.906 6 C -0.182 4.182 7 N -0.515 5.515 8 Si 0.704 3.296 9 H -0.215 1.215 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.025 3.975 13 H 0.099 0.901 14 C -0.218 4.218 15 C 0.269 3.731 16 O -0.304 6.304 17 C -0.178 4.178 18 N -0.103 5.103 19 H 0.266 0.734 20 C -0.016 4.016 21 C -0.155 4.155 22 C -0.230 4.230 23 C 0.411 3.589 24 O -0.397 6.397 25 O -0.321 6.321 26 C -0.039 4.039 27 C -0.153 4.153 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.168 6.478 15.379 18.162 hybrid contribution 0.642 0.588 -0.451 0.981 sum 7.810 7.066 14.928 18.269 Atomic orbital electron populations 1.22441 0.99657 0.98099 1.01019 1.20965 0.91677 0.83882 0.99426 1.43973 1.74569 1.11558 0.99619 1.19145 1.43072 0.94442 0.83185 0.90646 1.24676 0.98269 0.98089 0.97140 1.70318 1.28579 1.27332 1.25275 0.86704 0.82087 0.77969 0.82822 1.21484 1.22043 1.20756 1.20556 0.92494 0.95967 0.88488 0.90125 1.22362 0.99160 1.02526 0.97707 1.21752 0.83470 0.88021 0.79889 1.90499 1.61513 1.18317 1.60041 1.20242 1.05885 0.86851 1.04787 1.41649 1.29342 1.13882 1.25424 0.73442 1.20500 0.93027 0.96174 0.91900 1.20551 1.04233 0.91795 0.98888 1.18155 1.02840 0.97489 1.04517 1.20050 0.81171 0.72517 0.85138 1.90896 1.83276 1.41176 1.24361 1.84742 1.19025 1.79072 1.49240 1.20046 0.94916 0.96090 0.92801 1.20461 0.99353 0.90889 1.04609 0.96342 0.96724 0.89363 0.90247 0.95527 0.93602 0.91339 0.92037 0.94358 0.89701 0.89780 0.90269 0.73459 0.90820 0.89031 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.48 37.16 0.35 -3.23 16 2 C 0.16 4.08 4.47 -4.04 -0.02 4.07 16 3 N -0.58 -13.91 2.32 -166.97 -0.39 -14.30 16 4 C -0.27 -7.15 9.62 -15.06 -0.14 -7.30 16 5 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 6 C 0.02 0.47 4.90 -17.43 -0.09 0.39 16 7 N -0.87 -24.22 8.56 55.49 0.48 -23.75 16 8 Si 0.88 21.28 29.67 -169.99 -5.04 16.23 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.14 2.59 2.59 -69.08 -0.18 2.41 16 13 H 0.08 1.41 7.60 -51.93 -0.39 1.01 16 14 C -0.16 -2.58 8.15 37.16 0.30 -2.27 16 15 C 0.39 7.38 6.13 -33.04 -0.20 7.18 16 16 O -0.43 -9.38 12.29 5.44 0.07 -9.31 16 17 C -0.07 -1.06 6.69 -83.98 -0.56 -1.62 16 18 N -0.51 -5.96 5.68 -6.60 -0.04 -6.00 16 19 H 0.43 3.86 8.04 -40.82 -0.33 3.53 16 20 C 0.11 1.21 7.19 -81.53 -0.59 0.62 16 21 C -0.10 -0.69 10.23 36.01 0.37 -0.32 16 22 C -0.22 -3.03 6.00 -105.06 -0.63 -3.66 16 23 C 0.57 7.25 7.49 34.40 0.26 7.51 16 24 O -0.51 -7.66 17.90 -19.29 -0.35 -8.00 16 25 O -0.51 -4.93 13.44 -40.65 -0.55 -5.48 16 26 C -0.03 -0.49 6.25 -103.68 -0.65 -1.14 16 27 C -0.10 -1.42 9.60 36.00 0.35 -1.08 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.30 5.89 -51.93 -0.31 -0.01 16 30 H 0.09 2.32 6.28 -51.93 -0.33 1.99 16 31 H 0.08 2.23 5.89 -51.93 -0.31 1.92 16 32 H 0.03 0.64 5.92 -51.93 -0.31 0.34 16 33 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.09 6.48 -51.93 -0.34 0.75 16 36 H 0.04 0.48 7.50 -51.93 -0.39 0.09 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.41 1.88 9.11 45.56 0.42 2.29 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.50 6.43 -51.93 -0.33 1.17 16 43 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -33.52 351.96 -7.05 -40.57 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.10 Total: 3.18 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.43 Total: 1.54 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.05 Total: -44.05 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.82 Total: -22.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.52 -7.05 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.382 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds