Wall clock time and date at job start Tue Mar 31 2020 10:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47375 * 2 1 4 4 C 1.36943 * 119.99706 * 274.04464 * 3 2 1 5 5 H 1.08001 * 119.99900 * 173.95175 * 4 3 2 6 6 C 1.38805 * 119.99967 * 353.96577 * 4 3 2 7 7 N 1.31615 * 120.00381 * 34.09095 * 6 4 3 8 8 Si 1.86803 * 119.99951 * 214.09697 * 6 4 3 9 9 H 1.48497 * 109.47402 * 84.99208 * 8 6 4 10 10 H 1.48495 * 109.47504 * 204.99902 * 8 6 4 11 11 H 1.48509 * 109.46970 * 324.99518 * 8 6 4 12 12 C 1.46501 * 120.00543 * 94.04471 * 3 2 1 13 13 H 1.09004 * 109.47360 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47011 * 300.00265 * 12 3 2 15 15 C 1.50703 * 109.46915 * 59.99929 * 12 3 2 16 16 O 1.21410 * 120.00038 * 345.00413 * 15 12 3 17 17 C 1.41552 * 119.99593 * 165.00214 * 15 12 3 18 18 N 1.38007 * 125.97801 * 0.02562 * 17 15 12 19 19 H 0.96996 * 125.37045 * 0.02562 * 18 17 15 20 20 C 1.34113 * 109.26629 * 179.75332 * 18 17 15 21 21 C 1.50699 * 125.65924 * 180.22224 * 20 18 17 22 22 C 1.38417 * 108.68103 * 0.24553 * 20 18 17 23 23 C 1.47276 * 126.40652 * 179.97438 * 22 20 18 24 24 O 1.21529 * 120.00134 * 90.02366 * 23 22 20 25 25 O 1.34757 * 120.00296 * 270.02638 * 23 22 20 26 26 C 1.37818 * 125.97425 * 180.20265 * 17 15 12 27 27 C 1.50697 * 126.59222 * 359.97438 * 26 17 15 28 28 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46973 * 299.99880 * 1 2 3 30 30 H 1.08997 * 109.47010 * 60.00384 * 1 2 3 31 31 H 1.09002 * 109.47317 * 239.99723 * 2 1 3 32 32 H 1.09005 * 109.47252 * 119.99827 * 2 1 3 33 33 H 0.97010 * 120.00041 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47123 * 300.00004 * 14 12 3 35 35 H 1.09004 * 109.46929 * 59.99894 * 14 12 3 36 36 H 1.08994 * 109.47362 * 179.97438 * 14 12 3 37 37 H 1.08994 * 109.46816 * 90.02976 * 21 20 18 38 38 H 1.09000 * 109.46859 * 210.02604 * 21 20 18 39 39 H 1.09001 * 109.46746 * 330.02455 * 21 20 18 40 40 H 0.96698 * 116.99977 * 179.97438 * 25 23 22 41 41 H 1.08998 * 109.46977 * 270.30528 * 27 26 17 42 42 H 1.09002 * 109.46983 * 30.31032 * 27 26 17 43 43 H 1.09005 * 109.47141 * 150.30704 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4335 3.1014 -1.1787 6 6 1.9774 1.3918 -2.3877 7 7 1.0745 0.4386 -2.4789 8 14 3.0030 1.8526 -3.8795 9 1 4.2917 1.1158 -3.8410 10 1 2.2650 1.4947 -5.1173 11 1 3.2677 3.3138 -3.8660 12 6 2.3470 2.0421 1.2655 13 1 2.6906 3.0573 1.0668 14 6 1.1023 2.0902 2.1540 15 6 3.4354 1.2711 1.9670 16 8 3.7034 0.1410 1.6133 17 6 4.1452 1.8646 3.0383 18 7 3.9434 3.1343 3.5398 19 1 3.2870 3.7693 3.2131 20 6 4.7940 3.3498 4.5541 21 6 4.8868 4.6139 5.3692 22 6 5.5727 2.2187 4.7276 23 6 6.6329 2.0332 5.7329 24 8 6.3616 1.5721 6.8241 25 8 7.9038 2.3748 5.4429 26 6 5.1611 1.2766 3.7606 27 6 5.7205 -0.1083 3.5606 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.9417 -0.0249 -3.3208 34 1 0.3151 2.6477 1.6466 35 1 0.7584 1.0751 2.3527 36 1 1.3468 2.5814 3.0957 37 1 4.2172 4.5435 6.2263 38 1 5.9109 4.7467 5.7182 39 1 4.5997 5.4657 4.7527 40 1 8.5647 2.2350 6.1347 41 1 5.1629 -0.8172 4.1726 42 1 5.6331 -0.3873 2.5105 43 1 6.7702 -0.1220 3.8541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:56 Heat of formation + Delta-G solvation = -75.790873 kcal Electronic energy + Delta-G solvation = -26323.926694 eV Core-core repulsion = 22563.376091 eV Total energy + Delta-G solvation = -3760.550603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.86052 -40.87217 -40.07518 -37.60485 -36.99394 -34.45042 -33.92274 -32.94750 -31.74285 -30.37547 -29.22583 -28.04226 -26.14136 -25.54297 -24.03972 -22.88926 -21.57405 -20.81086 -20.17938 -18.96384 -18.78953 -18.18735 -17.18239 -17.02190 -16.51906 -16.40000 -15.87417 -15.78633 -15.45836 -15.03193 -14.83825 -14.46540 -14.23454 -14.09858 -13.93366 -13.81213 -13.75625 -13.31143 -13.29556 -13.17464 -13.15022 -12.76377 -12.73541 -12.68319 -12.54188 -12.46684 -12.24468 -11.88146 -11.85754 -11.52208 -11.33707 -10.50652 -10.16623 -10.01526 -9.21956 -8.87243 -7.89878 -5.04916 0.07639 1.05179 1.06324 1.44927 1.53397 1.55933 1.88764 2.08122 2.38522 2.51158 3.12240 3.41211 3.59631 3.64970 3.89199 3.98591 4.26027 4.38551 4.42040 4.46883 4.52599 4.64739 4.68714 4.70419 4.71525 4.84734 4.93310 4.97674 5.08461 5.11634 5.17130 5.22227 5.29267 5.39596 5.45561 5.53846 5.63678 5.68623 5.86691 6.19006 6.29366 6.33913 6.79021 7.01223 7.19040 7.91115 8.33640 9.14307 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.003800 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.385157 B = 7365.901666 C = 7543.596770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.176 3.824 3 N -0.594 5.594 4 C -0.272 4.272 5 H 0.083 0.917 6 C -0.033 4.033 7 N -0.897 5.897 8 Si 0.930 3.070 9 H -0.301 1.301 10 H -0.299 1.299 11 H -0.268 1.268 12 C 0.127 3.873 13 H 0.099 0.901 14 C -0.146 4.146 15 C 0.399 3.601 16 O -0.476 6.476 17 C -0.097 4.097 18 N -0.495 5.495 19 H 0.440 0.560 20 C 0.142 3.858 21 C -0.099 4.099 22 C -0.252 4.252 23 C 0.579 3.421 24 O -0.538 6.538 25 O -0.503 6.503 26 C -0.039 4.039 27 C -0.095 4.095 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.247 0.753 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.430 0.570 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 10.037 18.126 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.051 3.949 3 N -0.315 5.315 4 C -0.401 4.401 5 H 0.101 0.899 6 C -0.230 4.230 7 N -0.542 5.542 8 Si 0.759 3.241 9 H -0.229 1.229 10 H -0.226 1.226 11 H -0.193 1.193 12 C 0.018 3.982 13 H 0.117 0.883 14 C -0.205 4.205 15 C 0.278 3.722 16 O -0.353 6.353 17 C -0.206 4.206 18 N -0.091 5.091 19 H 0.282 0.718 20 C 0.016 3.984 21 C -0.156 4.156 22 C -0.259 4.259 23 C 0.422 3.578 24 O -0.428 6.428 25 O -0.317 6.317 26 C -0.046 4.046 27 C -0.152 4.152 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.292 0.708 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.015 9.362 17.630 21.510 hybrid contribution 0.506 -0.200 -0.984 1.124 sum 8.520 9.162 16.646 20.823 Atomic orbital electron populations 1.22242 0.98701 0.98387 1.00441 1.20671 0.92316 0.84488 0.97466 1.44077 1.75165 1.11253 1.00967 1.19476 1.41595 0.94867 0.84145 0.89874 1.25257 0.99317 0.99009 0.99414 1.70440 1.29773 1.28721 1.25234 0.85818 0.79898 0.78103 0.80238 1.22891 1.22585 1.19309 1.20902 0.93807 0.96392 0.87079 0.88292 1.22187 0.97400 1.01981 0.98933 1.21627 0.82892 0.87385 0.80308 1.90493 1.62868 1.20099 1.61828 1.19634 1.06957 0.88757 1.05221 1.41585 1.29592 1.12739 1.25206 0.71757 1.21190 0.90343 0.96627 0.90246 1.20803 1.05373 0.90287 0.99163 1.18385 1.04452 0.98095 1.04998 1.19831 0.81774 0.71849 0.84314 1.90890 1.83873 1.42575 1.25431 1.84685 1.18440 1.78289 1.50241 1.20240 0.94803 0.96356 0.93238 1.20412 1.00368 0.91225 1.03160 0.95674 0.94758 0.92163 0.94171 0.95389 0.94369 0.91631 0.93705 0.90181 0.88028 0.88914 0.87457 0.70794 0.90807 0.91256 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 9.48 71.98 0.68 -5.90 16 2 C 0.18 8.95 4.47 86.38 0.39 9.34 16 3 N -0.59 -28.81 2.32 -682.18 -1.59 -30.40 16 4 C -0.27 -14.43 9.62 84.03 0.81 -13.62 16 5 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 6 C -0.03 -1.83 4.90 84.86 0.42 -1.42 16 7 N -0.90 -51.47 8.56 21.65 0.19 -51.29 16 8 Si 0.93 44.63 29.67 68.60 2.04 46.67 16 9 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 10 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.13 4.71 2.59 44.25 0.11 4.82 16 13 H 0.10 3.24 7.60 -2.39 -0.02 3.22 16 14 C -0.15 -4.45 8.15 71.98 0.59 -3.87 16 15 C 0.40 14.86 6.13 26.50 0.16 15.02 16 16 O -0.48 -21.40 12.29 -3.43 -0.04 -21.44 16 17 C -0.10 -2.88 6.69 38.89 0.26 -2.62 16 18 N -0.49 -9.98 5.68 -174.81 -0.99 -10.98 16 19 H 0.44 6.15 8.04 -92.71 -0.75 5.40 16 20 C 0.14 2.65 7.19 42.25 0.30 2.95 16 21 C -0.10 -0.91 10.23 71.24 0.73 -0.18 16 22 C -0.25 -6.29 6.00 -20.15 -0.12 -6.41 16 23 C 0.58 13.36 7.49 70.20 0.53 13.89 16 24 O -0.54 -15.11 17.90 19.74 0.35 -14.76 16 25 O -0.50 -8.28 13.44 -56.68 -0.76 -9.04 16 26 C -0.04 -1.17 6.25 -19.25 -0.12 -1.29 16 27 C -0.09 -2.83 9.60 71.24 0.68 -2.14 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.03 1.44 5.89 -2.39 -0.01 1.43 16 30 H 0.06 3.23 6.28 -2.39 -0.02 3.21 16 31 H 0.04 2.36 5.89 -2.39 -0.01 2.34 16 32 H 0.03 1.40 5.92 -2.38 -0.01 1.39 16 33 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.52 6.48 -2.39 -0.02 1.51 16 36 H 0.08 1.75 7.50 -2.39 -0.02 1.73 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.79 7.92 -2.39 -0.02 0.77 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.43 2.65 9.11 -74.06 -0.67 1.98 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.07 2.38 6.43 -2.39 -0.02 2.36 16 43 H 0.07 1.92 8.05 -2.38 -0.02 1.90 16 Total: -1.00 -75.35 351.96 4.26 -71.10 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.35 Total: 11.57 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.42 Total: 8.57 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -2.39 Total: -92.66 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.45 Total: -45.24 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.04 Total: 46.67 kcal Total: -75.35 4.26 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.693 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds