Wall clock time and date at job start Tue Mar 31 2020 10:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47035 * 2 1 4 4 C 1.36940 * 119.99800 * 85.62633 * 3 2 1 5 5 H 1.07994 * 120.00293 * 209.65006 * 4 3 2 6 6 C 1.38819 * 119.99865 * 29.64376 * 4 3 2 7 7 N 1.31608 * 119.99980 * 39.45532 * 6 4 3 8 8 Si 1.86804 * 119.99738 * 219.72757 * 6 4 3 9 9 H 1.48496 * 109.47008 * 179.72748 * 8 6 4 10 10 H 1.48500 * 109.47159 * 299.72653 * 8 6 4 11 11 H 1.48502 * 109.47125 * 59.72859 * 8 6 4 12 12 C 1.46500 * 120.00275 * 265.62381 * 3 2 1 13 13 H 1.09003 * 109.46930 * 179.97438 * 12 3 2 14 14 C 1.52999 * 109.46864 * 60.00067 * 12 3 2 15 15 C 1.50696 * 109.46790 * 299.99901 * 12 3 2 16 16 O 1.21413 * 120.00629 * 20.00304 * 15 12 3 17 17 C 1.41550 * 119.99791 * 199.99804 * 15 12 3 18 18 N 1.38008 * 125.97933 * 0.02894 * 17 15 12 19 19 H 0.97001 * 125.36633 * 0.02562 * 18 17 15 20 20 C 1.34112 * 109.27066 * 179.97438 * 18 17 15 21 21 C 1.50695 * 125.66132 * 179.97438 * 20 18 17 22 22 C 1.38418 * 108.68028 * 359.97438 * 20 18 17 23 23 C 1.47280 * 126.40208 * 179.97438 * 22 20 18 24 24 O 1.21528 * 119.99708 * 90.02918 * 23 22 20 25 25 O 1.34759 * 120.00091 * 270.02005 * 23 22 20 26 26 C 1.37820 * 125.97864 * 179.71941 * 17 15 12 27 27 C 1.50697 * 126.59092 * 0.02562 * 26 17 15 28 28 H 1.09006 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47424 * 299.99227 * 1 2 3 30 30 H 1.08997 * 109.47512 * 59.99850 * 1 2 3 31 31 H 1.08999 * 109.47291 * 240.00234 * 2 1 3 32 32 H 1.09004 * 109.47268 * 120.00485 * 2 1 3 33 33 H 0.97000 * 120.00440 * 6.09081 * 7 6 4 34 34 H 1.09004 * 109.46697 * 180.02562 * 14 12 3 35 35 H 1.09003 * 109.47205 * 299.99658 * 14 12 3 36 36 H 1.08997 * 109.47351 * 60.00457 * 14 12 3 37 37 H 1.09001 * 109.47271 * 90.02336 * 21 20 18 38 38 H 1.09000 * 109.47480 * 210.02751 * 21 20 18 39 39 H 1.09007 * 109.47292 * 330.02459 * 21 20 18 40 40 H 0.96701 * 116.99952 * 179.97438 * 25 23 22 41 41 H 1.09005 * 109.46710 * 90.00557 * 27 26 17 42 42 H 1.08998 * 109.47139 * 210.00193 * 27 26 17 43 43 H 1.09003 * 109.47192 * 330.00257 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1612 2.0569 1.1825 5 1 2.0465 3.1304 1.2084 6 6 2.4535 1.3618 2.3481 7 7 3.3009 0.3553 2.3191 8 14 1.6380 1.8503 3.9562 9 1 2.1101 0.9548 5.0426 10 1 1.9915 3.2549 4.2838 11 1 0.1641 1.7295 3.8205 12 6 2.3537 2.0396 -1.2650 13 1 2.6961 3.0552 -1.0663 14 6 1.1138 2.0859 -2.1602 15 6 3.4459 1.2673 -1.9590 16 8 3.6514 0.1078 -1.6636 17 6 4.2323 1.8939 -2.9553 18 7 4.1066 3.1991 -3.3856 19 1 3.4604 3.8407 -3.0515 20 6 5.0194 3.4411 -4.3379 21 6 5.2076 4.7489 -5.0625 22 6 5.7601 2.2902 -4.5447 23 6 6.8648 2.1223 -5.5042 24 8 8.0066 2.3619 -5.1642 25 8 6.6093 1.7028 -6.7591 26 6 5.2613 1.3089 -3.6613 27 6 5.7569 -0.1071 -3.5192 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7880 0.1546 1.5046 34 1 1.3636 2.5754 -3.1016 35 1 0.7710 1.0705 -2.3589 36 1 0.3239 2.6445 -1.6583 37 1 5.9229 5.3659 -4.5188 38 1 5.5835 4.5567 -6.0675 39 1 4.2523 5.2701 -5.1256 40 1 7.3665 1.6079 -7.3530 41 1 5.2092 -0.7542 -4.2044 42 1 6.8203 -0.1453 -3.7553 43 1 5.5997 -0.4461 -2.4953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:02 Heat of formation + Delta-G solvation = -67.660365 kcal Electronic energy + Delta-G solvation = -26382.688433 eV Core-core repulsion = 22622.490396 eV Total energy + Delta-G solvation = -3760.198037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77764 -39.84879 -38.69014 -36.08872 -35.91501 -33.11163 -32.57517 -31.74696 -30.52170 -28.37983 -28.20349 -26.88676 -24.63572 -23.99459 -22.77478 -21.24328 -20.35917 -19.64807 -19.00763 -18.00690 -17.38589 -17.03064 -16.13153 -15.57611 -15.27762 -14.85897 -14.70840 -14.12457 -13.88853 -13.62222 -13.57318 -13.36688 -13.29125 -13.04597 -12.95998 -12.44869 -12.33732 -12.26403 -12.14216 -11.97383 -11.82390 -11.66827 -11.49249 -11.25427 -10.85653 -10.74208 -10.68693 -10.30459 -10.07024 -9.83413 -9.67599 -8.96373 -8.82837 -8.24348 -8.11541 -6.89154 -6.15644 -3.25245 1.28447 2.02974 2.06775 2.82484 3.28479 3.42674 3.47816 3.54076 3.70990 4.44973 4.51088 4.70756 4.75220 5.04926 5.08574 5.17999 5.21292 5.36444 5.42692 5.52293 5.62440 5.68128 5.77998 5.87735 5.89435 6.00724 6.07999 6.24667 6.27136 6.32833 6.36470 6.52976 6.54773 6.57574 6.69900 6.82270 6.88102 7.21142 7.23620 7.50465 7.80741 8.02894 8.20906 8.54214 9.07679 9.80532 10.25874 11.06313 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.003770 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.694447 B = 7424.702978 C = 7455.231531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.566 5.566 4 C -0.380 4.380 5 H 0.053 0.947 6 C -0.004 4.004 7 N -0.875 5.875 8 Si 1.048 2.952 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.292 1.292 12 C 0.127 3.873 13 H 0.078 0.922 14 C -0.154 4.154 15 C 0.393 3.607 16 O -0.436 6.436 17 C -0.069 4.069 18 N -0.508 5.508 19 H 0.425 0.575 20 C 0.107 3.893 21 C -0.097 4.097 22 C -0.222 4.222 23 C 0.569 3.431 24 O -0.508 6.508 25 O -0.510 6.510 26 C -0.032 4.032 27 C -0.097 4.097 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.276 0.724 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.407 0.593 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 6.351 -17.639 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.286 5.286 4 C -0.508 4.508 5 H 0.071 0.929 6 C -0.212 4.212 7 N -0.510 5.510 8 Si 0.877 3.123 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.219 1.219 12 C 0.017 3.983 13 H 0.096 0.904 14 C -0.213 4.213 15 C 0.268 3.732 16 O -0.309 6.309 17 C -0.179 4.179 18 N -0.103 5.103 19 H 0.265 0.735 20 C -0.017 4.017 21 C -0.154 4.154 22 C -0.230 4.230 23 C 0.411 3.589 24 O -0.395 6.395 25 O -0.321 6.321 26 C -0.039 4.039 27 C -0.153 4.153 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.138 5.466 -15.348 16.332 hybrid contribution 0.449 0.941 -1.900 2.167 sum 1.587 6.407 -17.248 18.468 Atomic orbital electron populations 1.22347 1.00202 0.98818 1.00959 1.21008 0.90907 0.85834 1.01644 1.43924 1.72399 1.12263 1.00058 1.19714 1.51751 0.93183 0.86146 0.92912 1.25718 0.96161 0.98173 1.01120 1.70724 1.17841 1.32334 1.30140 0.83807 0.76598 0.75511 0.76400 1.21184 1.21918 1.21890 1.20921 0.91729 0.96605 0.89014 0.90357 1.22255 0.98967 1.02243 0.97850 1.21886 0.83988 0.88624 0.78665 1.90482 1.64923 1.17442 1.58093 1.20324 1.05521 0.85293 1.06756 1.41623 1.27513 1.11581 1.29556 0.73525 1.20497 0.91527 0.96289 0.93354 1.20547 1.03526 0.91333 1.00017 1.18148 1.04094 0.96064 1.04687 1.20044 0.87407 0.71492 0.79975 1.90904 1.23417 1.46785 1.78443 1.84730 1.44236 1.79606 1.23577 1.20053 0.93790 0.95755 0.94256 1.20463 0.99801 0.90376 1.04702 0.94749 0.92965 0.94175 0.93053 0.91375 0.91370 0.94058 0.92252 0.91491 0.89651 0.89790 0.90342 0.73475 0.90841 0.92153 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.00 37.15 0.37 -3.02 16 2 C 0.13 3.13 4.68 -4.04 -0.02 3.12 16 3 N -0.57 -13.64 2.17 -166.98 -0.36 -14.01 16 4 C -0.38 -10.24 9.18 -15.06 -0.14 -10.38 16 5 H 0.05 1.43 8.05 -52.49 -0.42 1.00 16 6 C 0.00 -0.13 4.55 -17.43 -0.08 -0.20 16 7 N -0.88 -26.13 12.18 55.49 0.68 -25.46 16 8 Si 1.05 24.82 30.05 -169.99 -5.11 19.71 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.13 2.48 2.65 -69.08 -0.18 2.30 16 13 H 0.08 1.47 7.47 -51.93 -0.39 1.08 16 14 C -0.15 -2.45 8.20 37.16 0.30 -2.15 16 15 C 0.39 7.68 6.12 -33.05 -0.20 7.48 16 16 O -0.44 -9.78 12.19 5.44 0.07 -9.72 16 17 C -0.07 -1.14 6.76 -83.97 -0.57 -1.71 16 18 N -0.51 -6.39 5.86 -6.61 -0.04 -6.43 16 19 H 0.43 4.22 8.30 -40.82 -0.34 3.88 16 20 C 0.11 1.28 7.19 -81.53 -0.59 0.69 16 21 C -0.10 -0.74 10.23 36.00 0.37 -0.38 16 22 C -0.22 -3.20 6.00 -105.06 -0.63 -3.83 16 23 C 0.57 7.59 7.49 34.41 0.26 7.85 16 24 O -0.51 -8.07 17.90 -19.29 -0.35 -8.42 16 25 O -0.51 -5.04 13.44 -40.65 -0.55 -5.59 16 26 C -0.03 -0.52 6.25 -103.68 -0.65 -1.17 16 27 C -0.10 -1.51 9.61 36.00 0.35 -1.16 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.75 5.93 -51.93 -0.31 0.44 16 31 H 0.05 1.20 5.78 -51.93 -0.30 0.90 16 32 H 0.07 1.86 5.62 -51.93 -0.29 1.57 16 33 H 0.28 8.55 8.01 -40.82 -0.33 8.22 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.00 6.50 -51.93 -0.34 0.66 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 39 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.41 1.97 9.11 45.56 0.42 2.38 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 43 H 0.09 1.63 6.41 -51.93 -0.33 1.29 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -34.69 358.19 -6.88 -41.57 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.22 Total: 5.52 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.41 Total: -2.58 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.27 Total: -45.89 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.83 Total: -23.72 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.11 Total: 19.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.69 -6.88 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.086 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds