Wall clock time and date at job start Tue Mar 31 2020 10:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47035 * 2 1 4 4 C 1.36940 * 119.99800 * 85.62633 * 3 2 1 5 5 H 1.07994 * 120.00293 * 209.65006 * 4 3 2 6 6 C 1.38819 * 119.99865 * 29.64376 * 4 3 2 7 7 N 1.31608 * 119.99980 * 39.45532 * 6 4 3 8 8 Si 1.86804 * 119.99738 * 219.72757 * 6 4 3 9 9 H 1.48496 * 109.47008 * 179.72748 * 8 6 4 10 10 H 1.48500 * 109.47159 * 299.72653 * 8 6 4 11 11 H 1.48502 * 109.47125 * 59.72859 * 8 6 4 12 12 C 1.46500 * 120.00275 * 265.62381 * 3 2 1 13 13 H 1.09003 * 109.46930 * 179.97438 * 12 3 2 14 14 C 1.52999 * 109.46864 * 60.00067 * 12 3 2 15 15 C 1.50696 * 109.46790 * 299.99901 * 12 3 2 16 16 O 1.21413 * 120.00629 * 20.00304 * 15 12 3 17 17 C 1.41550 * 119.99791 * 199.99804 * 15 12 3 18 18 N 1.38008 * 125.97933 * 0.02894 * 17 15 12 19 19 H 0.97001 * 125.36633 * 0.02562 * 18 17 15 20 20 C 1.34112 * 109.27066 * 179.97438 * 18 17 15 21 21 C 1.50695 * 125.66132 * 179.97438 * 20 18 17 22 22 C 1.38418 * 108.68028 * 359.97438 * 20 18 17 23 23 C 1.47280 * 126.40208 * 179.97438 * 22 20 18 24 24 O 1.21528 * 119.99708 * 90.02918 * 23 22 20 25 25 O 1.34759 * 120.00091 * 270.02005 * 23 22 20 26 26 C 1.37820 * 125.97864 * 179.71941 * 17 15 12 27 27 C 1.50697 * 126.59092 * 0.02562 * 26 17 15 28 28 H 1.09006 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47424 * 299.99227 * 1 2 3 30 30 H 1.08997 * 109.47512 * 59.99850 * 1 2 3 31 31 H 1.08999 * 109.47291 * 240.00234 * 2 1 3 32 32 H 1.09004 * 109.47268 * 120.00485 * 2 1 3 33 33 H 0.97000 * 120.00440 * 6.09081 * 7 6 4 34 34 H 1.09004 * 109.46697 * 180.02562 * 14 12 3 35 35 H 1.09003 * 109.47205 * 299.99658 * 14 12 3 36 36 H 1.08997 * 109.47351 * 60.00457 * 14 12 3 37 37 H 1.09001 * 109.47271 * 90.02336 * 21 20 18 38 38 H 1.09000 * 109.47480 * 210.02751 * 21 20 18 39 39 H 1.09007 * 109.47292 * 330.02459 * 21 20 18 40 40 H 0.96701 * 116.99952 * 179.97438 * 25 23 22 41 41 H 1.09005 * 109.46710 * 90.00557 * 27 26 17 42 42 H 1.08998 * 109.47139 * 210.00193 * 27 26 17 43 43 H 1.09003 * 109.47192 * 330.00257 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1612 2.0569 1.1825 5 1 2.0465 3.1304 1.2084 6 6 2.4535 1.3618 2.3481 7 7 3.3009 0.3553 2.3191 8 14 1.6380 1.8503 3.9562 9 1 2.1101 0.9548 5.0426 10 1 1.9915 3.2549 4.2838 11 1 0.1641 1.7295 3.8205 12 6 2.3537 2.0396 -1.2650 13 1 2.6961 3.0552 -1.0663 14 6 1.1138 2.0859 -2.1602 15 6 3.4459 1.2673 -1.9590 16 8 3.6514 0.1078 -1.6636 17 6 4.2323 1.8939 -2.9553 18 7 4.1066 3.1991 -3.3856 19 1 3.4604 3.8407 -3.0515 20 6 5.0194 3.4411 -4.3379 21 6 5.2076 4.7489 -5.0625 22 6 5.7601 2.2902 -4.5447 23 6 6.8648 2.1223 -5.5042 24 8 8.0066 2.3619 -5.1642 25 8 6.6093 1.7028 -6.7591 26 6 5.2613 1.3089 -3.6613 27 6 5.7569 -0.1071 -3.5192 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7880 0.1546 1.5046 34 1 1.3636 2.5754 -3.1016 35 1 0.7710 1.0705 -2.3589 36 1 0.3239 2.6445 -1.6583 37 1 5.9229 5.3659 -4.5188 38 1 5.5835 4.5567 -6.0675 39 1 4.2523 5.2701 -5.1256 40 1 7.3665 1.6079 -7.3530 41 1 5.2092 -0.7542 -4.2044 42 1 6.8203 -0.1453 -3.7553 43 1 5.5997 -0.4461 -2.4953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:01 Heat of formation + Delta-G solvation = -91.015385 kcal Electronic energy + Delta-G solvation = -26383.701183 eV Core-core repulsion = 22622.490396 eV Total energy + Delta-G solvation = -3761.210787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.90965 -40.92106 -40.15266 -37.69171 -37.03162 -34.48978 -33.99138 -33.13147 -32.08355 -30.09243 -29.28521 -28.10857 -26.08475 -25.60727 -24.14426 -22.84744 -21.64417 -20.87018 -20.24897 -19.32310 -18.97703 -18.38783 -17.15348 -16.91901 -16.48667 -16.34090 -16.12895 -15.58527 -15.45873 -15.30433 -15.06295 -14.56628 -14.32795 -14.16441 -14.14111 -13.86391 -13.83398 -13.49779 -13.32717 -13.26643 -13.19639 -12.82480 -12.71497 -12.56458 -12.54810 -12.52368 -12.10111 -11.94766 -11.90724 -11.65101 -11.48931 -10.52900 -10.27326 -10.06661 -9.27519 -8.87853 -8.26664 -5.35807 0.01613 0.99628 1.02580 1.57045 1.64048 1.82816 1.83419 2.03007 2.32741 2.63886 3.08762 3.27018 3.53406 3.59582 3.83127 3.92808 4.21384 4.33394 4.36201 4.41233 4.45593 4.49879 4.59720 4.63778 4.65808 4.72466 4.82422 4.85961 4.90809 4.92853 5.03401 5.09065 5.11318 5.30033 5.37556 5.39843 5.50023 5.61428 5.64348 5.94437 6.27783 6.33194 6.71679 6.97510 7.07389 7.80353 8.25390 8.88670 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.003770 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.694447 B = 7424.702978 C = 7455.231531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 N -0.583 5.583 4 C -0.375 4.375 5 H 0.052 0.948 6 C -0.058 4.058 7 N -0.908 5.908 8 Si 1.097 2.903 9 H -0.297 1.297 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.120 3.880 13 H 0.086 0.914 14 C -0.141 4.141 15 C 0.395 3.605 16 O -0.480 6.480 17 C -0.101 4.101 18 N -0.495 5.495 19 H 0.439 0.561 20 C 0.141 3.859 21 C -0.099 4.099 22 C -0.252 4.252 23 C 0.580 3.420 24 O -0.540 6.540 25 O -0.500 6.500 26 C -0.040 4.040 27 C -0.093 4.093 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.027 0.973 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.431 0.569 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 9.029 -20.084 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.011 3.989 3 N -0.304 5.304 4 C -0.504 4.504 5 H 0.070 0.930 6 C -0.259 4.259 7 N -0.546 5.546 8 Si 0.922 3.078 9 H -0.224 1.224 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.011 3.989 13 H 0.104 0.896 14 C -0.199 4.199 15 C 0.274 3.726 16 O -0.357 6.357 17 C -0.210 4.210 18 N -0.091 5.091 19 H 0.281 0.719 20 C 0.015 3.985 21 C -0.156 4.156 22 C -0.259 4.259 23 C 0.423 3.577 24 O -0.430 6.430 25 O -0.313 6.313 26 C -0.048 4.048 27 C -0.150 4.150 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.293 0.707 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.090 8.185 -17.852 19.639 hybrid contribution 0.837 0.178 -1.382 1.625 sum 0.928 8.363 -19.233 20.994 Atomic orbital electron populations 1.22200 0.97587 1.00166 1.01125 1.20845 0.92852 0.85719 0.99471 1.44042 1.73222 1.12169 1.00933 1.19932 1.49727 0.93276 0.87484 0.93018 1.26962 0.96289 0.98248 1.04364 1.70870 1.20151 1.34746 1.28850 0.83138 0.76175 0.75877 0.72656 1.22385 1.19802 1.20567 1.21169 0.93536 0.96257 0.87917 0.89643 1.22097 0.96916 1.02226 0.98699 1.21841 0.83633 0.88135 0.78992 1.90478 1.66066 1.19214 1.59974 1.19754 1.06503 0.87188 1.07580 1.41564 1.27911 1.10366 1.29284 0.71881 1.21229 0.88962 0.97026 0.91241 1.20808 1.05725 0.89031 0.99996 1.18389 1.05364 0.96559 1.05617 1.19794 0.86420 0.70859 0.80617 1.90899 1.24417 1.48437 1.79232 1.84668 1.45563 1.78540 1.22549 1.20257 0.93827 0.96148 0.94526 1.20393 1.00517 0.90947 1.03160 0.92898 0.94609 0.91951 0.93340 0.95531 0.93862 0.90190 0.93217 0.91108 0.88464 0.88581 0.87179 0.70737 0.89681 0.91323 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.22 10.00 71.98 0.72 -5.50 16 2 C 0.14 6.73 4.68 86.38 0.40 7.13 16 3 N -0.58 -28.53 2.17 -682.21 -1.48 -30.01 16 4 C -0.38 -20.50 9.18 84.03 0.77 -19.73 16 5 H 0.05 2.79 8.05 -2.91 -0.02 2.77 16 6 C -0.06 -3.30 4.55 84.87 0.39 -2.91 16 7 N -0.91 -56.90 12.18 21.65 0.26 -56.64 16 8 Si 1.10 50.90 30.05 68.60 2.06 52.96 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.12 4.61 2.65 44.24 0.12 4.73 16 13 H 0.09 3.12 7.47 -2.39 -0.02 3.10 16 14 C -0.14 -4.17 8.20 71.98 0.59 -3.58 16 15 C 0.39 15.68 6.12 26.50 0.16 15.84 16 16 O -0.48 -22.73 12.19 -3.44 -0.04 -22.77 16 17 C -0.10 -3.29 6.76 38.89 0.26 -3.02 16 18 N -0.49 -11.18 5.86 -174.81 -1.02 -12.20 16 19 H 0.44 7.22 8.30 -92.71 -0.77 6.45 16 20 C 0.14 2.91 7.19 42.25 0.30 3.22 16 21 C -0.10 -1.05 10.23 71.23 0.73 -0.32 16 22 C -0.25 -6.79 6.00 -20.15 -0.12 -6.91 16 23 C 0.58 14.28 7.49 70.20 0.53 14.81 16 24 O -0.54 -16.38 17.90 19.75 0.35 -16.02 16 25 O -0.50 -8.44 13.44 -56.69 -0.76 -9.20 16 26 C -0.04 -1.31 6.25 -19.25 -0.12 -1.43 16 27 C -0.09 -3.01 9.61 71.23 0.68 -2.32 16 28 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.25 5.93 -2.39 -0.01 2.23 16 31 H 0.05 2.38 5.78 -2.39 -0.01 2.36 16 32 H 0.03 1.53 5.62 -2.39 -0.01 1.52 16 33 H 0.25 16.69 8.01 -92.71 -0.74 15.95 16 34 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.05 1.58 6.50 -2.39 -0.02 1.56 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.88 7.92 -2.39 -0.02 0.87 16 39 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.43 2.84 9.11 -74.06 -0.67 2.17 16 41 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.07 2.02 8.05 -2.39 -0.02 2.00 16 43 H 0.06 2.39 6.41 -2.39 -0.02 2.37 16 Total: -1.00 -79.90 358.19 4.43 -75.47 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.35 Total: 18.42 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.42 Total: -0.01 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -2.24 Total: -98.85 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.45 Total: -48.00 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.96 kcal Total: -79.90 4.43 -75.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.546 kcal (2) G-P(sol) polarization free energy of solvation -79.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds