Wall clock time and date at job start Tue Mar 31 2020 09:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47065 * 2 1 4 4 N 1.46899 * 109.47537 * 120.00214 * 2 1 3 5 5 C 1.46898 * 110.99933 * 275.00119 * 4 2 1 6 6 C 1.53037 * 109.46049 * 275.06581 * 5 4 2 7 7 C 1.53188 * 109.31801 * 178.61299 * 6 5 4 8 8 N 1.46937 * 108.77199 * 54.63213 * 7 6 5 9 9 C 1.36935 * 120.62579 * 126.37390 * 8 7 6 10 10 H 1.08000 * 120.00006 * 331.85726 * 9 8 7 11 11 C 1.38809 * 120.00050 * 151.86498 * 9 8 7 12 12 N 1.31625 * 119.99717 * 343.06201 * 11 9 8 13 13 Si 1.86801 * 120.00256 * 163.05714 * 11 9 8 14 14 H 1.48494 * 109.47227 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46784 * 120.00302 * 13 11 9 16 16 H 1.48501 * 109.47113 * 240.00058 * 13 11 9 17 17 C 1.46924 * 118.73827 * 306.39397 * 8 7 6 18 18 C 1.53037 * 109.46404 * 154.99635 * 5 4 2 19 19 C 1.50705 * 109.46750 * 240.00236 * 2 1 3 20 20 C 1.34157 * 125.42801 * 100.00035 * 19 2 1 21 21 C 1.47057 * 105.94720 * 179.97438 * 20 19 2 22 22 C 1.47235 * 127.19878 * 179.97438 * 21 20 19 23 23 O 1.21540 * 120.00059 * 0.02562 * 22 21 20 24 24 O 1.34776 * 119.99980 * 180.02562 * 22 21 20 25 25 C 1.36494 * 105.60035 * 0.02562 * 21 20 19 26 26 O 1.33628 * 108.38175 * 359.75647 * 25 21 20 27 27 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46683 * 299.99904 * 1 2 3 29 29 H 1.09001 * 109.47313 * 59.99855 * 1 2 3 30 30 H 1.00903 * 111.00072 * 38.94950 * 4 2 1 31 31 H 1.09001 * 109.46114 * 35.02453 * 5 4 2 32 32 H 1.09008 * 109.49854 * 298.56654 * 6 5 4 33 33 H 1.09006 * 109.49950 * 58.66077 * 6 5 4 34 34 H 1.08998 * 109.58702 * 294.85401 * 7 6 5 35 35 H 1.08994 * 109.70748 * 174.49160 * 7 6 5 36 36 H 0.97001 * 119.99866 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.58500 * 293.81848 * 17 8 7 38 38 H 1.09004 * 109.69692 * 173.46327 * 17 8 7 39 39 H 1.09005 * 109.50065 * 301.34268 * 18 5 4 40 40 H 1.09009 * 109.49633 * 61.39936 * 18 5 4 41 41 H 1.07995 * 127.02735 * 0.02562 * 20 19 2 42 42 H 0.96696 * 116.99858 * 180.02562 * 24 22 21 43 43 H 1.08005 * 125.81267 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 3.4108 0.9821 2.3211 7 6 3.4582 1.9602 3.4992 8 7 3.2127 1.2157 4.7420 9 6 4.0902 1.2988 5.7899 10 1 5.1344 1.5035 5.6049 11 6 3.6377 1.1200 7.0899 12 7 2.3514 1.2034 7.3564 13 14 4.8542 0.7608 8.4613 14 1 6.2301 0.7190 7.9042 15 1 4.7695 1.8282 9.4903 16 1 4.5301 -0.5499 9.0798 17 6 2.0081 0.3801 4.8387 18 6 1.9771 -0.5802 3.6455 19 6 2.0322 -0.7104 -1.2306 20 6 2.4704 -0.1130 -2.3490 21 6 2.8527 -1.1990 -3.2639 22 6 3.3949 -1.0657 -4.6263 23 8 3.5698 0.0374 -5.1056 24 8 3.6973 -2.1670 -5.3420 25 6 2.5987 -2.3563 -2.5863 26 8 2.1171 -2.0415 -1.3803 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.4496 -1.4980 1.4100 31 1 1.2573 0.9325 2.2908 32 1 4.2362 0.2747 2.4022 33 1 3.4957 1.5351 1.3856 34 1 2.6897 2.7226 3.3722 35 1 4.4389 2.4337 3.5446 36 1 2.0352 1.0788 8.2649 37 1 1.1215 1.0138 4.8209 38 1 2.0306 -0.1910 5.7669 39 1 1.0414 -1.1393 3.6527 40 1 2.8156 -1.2734 3.7139 41 1 2.5309 0.9485 -2.5384 42 1 4.0509 -2.0292 -6.2313 43 1 2.7634 -3.3563 -2.9596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609775527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:43 Heat of formation + Delta-G solvation = -57.157191 kcal Electronic energy + Delta-G solvation = -25220.945789 eV Core-core repulsion = 21461.203204 eV Total energy + Delta-G solvation = -3759.742585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.82782 -40.10545 -38.39557 -36.33177 -35.98824 -33.28502 -32.86191 -31.11915 -29.87714 -29.25798 -28.05309 -24.99445 -24.67114 -23.39864 -22.16985 -21.41314 -21.24195 -20.23139 -19.14148 -18.01865 -17.77688 -16.74989 -16.51732 -16.10126 -15.63779 -15.48084 -14.99905 -14.79469 -14.27501 -13.87071 -13.65458 -13.50049 -13.32277 -13.19559 -12.93613 -12.73877 -12.42537 -12.30327 -11.91646 -11.78937 -11.61374 -11.38161 -11.02415 -10.99347 -10.80149 -10.71933 -10.33707 -10.21397 -10.09750 -9.93862 -9.62185 -9.49154 -8.86598 -8.47488 -8.31165 -6.66939 -5.78972 -3.20819 0.91184 1.78270 2.51649 2.78995 2.83389 3.37559 3.45676 3.48256 4.05796 4.41118 4.45466 4.50500 4.76030 4.94032 5.05031 5.33404 5.35053 5.38667 5.41214 5.45814 5.49107 5.58516 5.66799 5.74550 5.85450 5.97286 6.03561 6.13159 6.14149 6.32331 6.42876 6.50292 6.60901 6.64058 6.81385 6.81499 7.02605 7.23304 7.35726 7.49117 7.61112 7.64546 7.80925 8.45707 9.21939 9.85371 10.42012 11.29873 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028097 B = 0.002581 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.310965 B =10845.442855 C =11134.019429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.161 3.839 3 H 0.111 0.889 4 N -0.681 5.681 5 C 0.096 3.904 6 C -0.119 4.119 7 C 0.145 3.855 8 N -0.592 5.592 9 C -0.249 4.249 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.904 5.904 13 Si 0.902 3.098 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.289 1.289 17 C 0.174 3.826 18 C -0.140 4.140 19 C 0.028 3.972 20 C -0.167 4.167 21 C -0.235 4.235 22 C 0.557 3.443 23 O -0.514 6.514 24 O -0.517 6.517 25 C 0.053 3.947 26 O -0.156 6.156 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.343 0.657 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.055 0.945 36 H 0.253 0.747 37 H 0.016 0.984 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.160 0.840 42 H 0.415 0.585 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -7.489 -21.337 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.050 3.950 3 H 0.128 0.872 4 N -0.312 5.312 5 C -0.012 4.012 6 C -0.158 4.158 7 C 0.018 3.982 8 N -0.314 5.314 9 C -0.379 4.379 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.549 5.549 13 Si 0.732 3.268 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.047 3.953 18 C -0.180 4.180 19 C -0.022 4.022 20 C -0.186 4.186 21 C -0.237 4.237 22 C 0.401 3.599 23 O -0.404 6.404 24 O -0.329 6.329 25 C -0.018 4.018 26 O -0.050 6.050 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.178 0.822 42 H 0.274 0.726 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.025 -7.361 -20.805 22.276 hybrid contribution -0.048 0.045 0.041 0.077 sum -3.073 -7.316 -20.764 22.229 Atomic orbital electron populations 1.22545 0.95423 1.02933 1.03193 1.20166 0.92911 0.96551 0.85391 0.87162 1.60657 1.56756 1.10072 1.03693 1.21525 0.97501 0.93378 0.88814 1.22043 0.96884 0.98791 0.98130 1.20924 0.98637 0.92225 0.86445 1.44058 1.25336 1.50124 1.11929 1.19239 0.89525 1.44231 0.84890 0.91649 1.25045 0.95903 1.01497 0.97320 1.70039 1.12663 1.53070 1.19156 0.86230 0.80803 0.77659 0.82149 1.20234 1.21772 1.21575 1.20733 0.88118 0.91168 0.95258 1.22403 1.00270 0.99445 0.95895 1.22433 1.02826 0.79595 0.97332 1.22336 1.04615 0.99666 0.92002 1.20379 1.14476 0.94697 0.94165 1.19749 0.73891 0.81500 0.84711 1.90909 1.50824 1.27520 1.71139 1.84545 1.77590 1.37681 1.33124 1.24672 0.95005 0.99675 0.82440 1.83811 1.63761 1.25272 1.32156 0.91920 0.91051 0.91616 0.83776 0.94133 0.91660 0.93551 0.96739 0.92670 0.93728 0.96565 0.89290 0.93541 0.91756 0.82212 0.72616 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.13 37.16 0.34 -1.40 16 2 C 0.16 1.81 2.84 -68.86 -0.20 1.61 16 3 H 0.11 1.25 7.09 -51.93 -0.37 0.88 16 4 N -0.68 -9.06 6.03 -100.91 -0.61 -9.67 16 5 C 0.10 1.53 2.27 -67.68 -0.15 1.37 16 6 C -0.12 -2.06 5.57 -26.61 -0.15 -2.21 16 7 C 0.14 3.00 6.52 -3.71 -0.02 2.98 16 8 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 9 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 10 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 11 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 12 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 13 Si 0.90 21.65 29.59 -169.99 -5.03 16.63 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 18 C -0.14 -2.56 5.36 -26.62 -0.14 -2.70 16 19 C 0.03 0.32 6.13 -35.74 -0.22 0.10 16 20 C -0.17 -1.93 10.89 -37.44 -0.41 -2.33 16 21 C -0.23 -2.56 6.31 -103.30 -0.65 -3.21 16 22 C 0.56 6.02 8.33 34.39 0.29 6.30 16 23 O -0.51 -7.17 17.77 -19.30 -0.34 -7.52 16 24 O -0.52 -3.64 13.28 -40.70 -0.54 -4.19 16 25 C 0.05 0.48 11.94 30.10 0.36 0.84 16 26 O -0.16 -1.72 10.50 7.71 0.08 -1.64 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.07 0.71 7.42 -51.93 -0.39 0.33 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.34 4.29 8.07 -39.29 -0.32 3.98 16 31 H 0.04 0.65 7.11 -51.93 -0.37 0.28 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 33 H 0.05 0.71 7.41 -51.93 -0.38 0.33 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 39 H 0.05 0.75 8.10 -51.93 -0.42 0.32 16 40 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 41 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.42 1.09 9.11 45.56 0.42 1.51 16 43 H 0.22 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -32.79 357.22 -7.65 -40.44 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.49 Total: 2.86 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.21 Total: -1.68 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.50 Total: -50.29 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.80 Total: -13.34 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.79 -7.65 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609775527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.720 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds