Wall clock time and date at job start Tue Mar 31 2020 09:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47396 * 2 1 4 4 C 1.53000 * 109.47641 * 239.99806 * 2 1 3 5 5 N 1.46496 * 109.47134 * 65.00038 * 4 2 1 6 6 C 1.36932 * 120.00107 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00026 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00216 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00109 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47340 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47311 * 120.00335 * 10 8 6 13 13 H 1.48504 * 109.47261 * 240.00233 * 10 8 6 14 14 C 1.53001 * 109.46760 * 119.99679 * 2 1 3 15 15 N 1.46499 * 109.47501 * 295.00038 * 14 2 1 16 16 C 1.34777 * 120.00289 * 180.02562 * 15 14 2 17 17 O 1.21689 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.46654 * 119.99653 * 180.02562 * 16 15 14 19 19 O 1.35387 * 126.12387 * 0.03041 * 18 16 15 20 20 C 1.34402 * 109.48247 * 179.97438 * 19 18 16 21 21 C 1.33905 * 108.55522 * 359.95940 * 20 19 18 22 22 C 1.35197 * 126.11512 * 179.97438 * 18 16 15 23 23 C 1.50483 * 130.61115 * 0.32032 * 22 18 16 24 24 C 1.53679 * 107.56022 * 164.08891 * 23 22 18 25 25 O 1.42904 * 109.89275 * 48.26773 * 24 23 22 26 26 C 1.43515 * 114.76350 * 287.67711 * 25 24 23 27 27 H 1.09001 * 109.46745 * 60.00615 * 1 2 3 28 28 H 1.09007 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47575 * 300.00007 * 1 2 3 30 30 H 1.09003 * 109.46986 * 185.00274 * 4 2 1 31 31 H 1.09002 * 109.46728 * 305.00198 * 4 2 1 32 32 H 0.97001 * 120.00135 * 0.02562 * 5 4 2 33 33 H 0.96994 * 120.00184 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47204 * 175.00444 * 14 2 1 35 35 H 1.08999 * 109.47247 * 55.00251 * 14 2 1 36 36 H 0.97002 * 119.99764 * 0.02562 * 15 14 2 37 37 H 1.08001 * 125.72437 * 179.91461 * 20 19 18 38 38 H 1.08999 * 109.74598 * 44.60396 * 23 22 18 39 39 H 1.09003 * 109.86203 * 283.64418 * 23 22 18 40 40 H 1.09002 * 109.38705 * 288.16262 * 24 23 22 41 41 H 1.08996 * 109.38325 * 168.36949 * 24 23 22 42 42 H 1.09000 * 109.82084 * 171.04271 * 26 25 24 43 43 H 1.09008 * 109.82098 * 291.90152 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 2.0013 -0.4209 -3.6855 7 1 2.5616 -1.3386 -3.7863 8 6 1.6337 0.2957 -4.8161 9 7 0.9504 1.4139 -4.6932 10 14 2.1100 -0.3262 -6.5119 11 1 2.8711 -1.5944 -6.3783 12 1 0.8834 -0.5665 -7.3136 13 1 2.9549 0.6882 -7.1919 14 6 2.0399 -0.7212 1.2493 15 7 1.6523 0.0354 2.4424 16 6 1.9962 -0.4130 3.6660 17 8 2.6291 -1.4461 3.7797 18 6 1.6077 0.3443 4.8603 19 8 0.9062 1.5021 4.8781 20 6 0.7371 1.9042 6.1493 21 6 1.3238 1.0140 6.9595 22 6 1.8850 0.0104 6.1407 23 6 2.6370 -1.1642 6.7059 24 6 2.9877 -0.8318 8.1647 25 8 1.8297 -0.3419 8.8437 26 6 1.4245 0.9812 8.4632 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.1264 -0.7995 -1.2054 31 1 1.6054 -1.7198 -1.2950 32 1 1.1490 0.8593 -2.3518 33 1 0.6938 1.9148 -5.4832 34 1 3.1262 -0.7994 1.2058 35 1 1.6053 -1.7197 1.2953 36 1 1.1481 0.8591 2.3518 37 1 0.2160 2.7962 6.4646 38 1 3.5501 -1.3269 6.1333 39 1 2.0119 -2.0565 6.6693 40 1 3.7680 -0.0710 8.1849 41 1 3.3467 -1.7315 8.6645 42 1 0.4551 1.2122 8.9048 43 1 2.1659 1.7060 8.7996 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698762730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:15 Heat of formation + Delta-G solvation = -62.794530 kcal Electronic energy + Delta-G solvation = -24726.154189 eV Core-core repulsion = 20966.167150 eV Total energy + Delta-G solvation = -3759.987039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.17018 -39.62944 -38.92560 -36.90703 -34.55972 -33.86938 -32.64317 -32.32591 -30.26307 -29.49251 -26.72652 -26.56082 -25.51084 -23.97795 -23.15119 -22.11367 -20.53057 -20.05056 -19.78929 -18.33321 -17.09898 -16.89461 -16.61705 -16.38844 -16.01210 -15.62224 -15.38854 -15.18674 -14.68140 -14.25110 -14.23520 -13.80289 -13.64395 -13.49903 -13.06061 -13.01624 -12.67008 -12.58705 -12.34462 -12.07763 -11.94799 -11.29432 -11.08300 -10.94219 -10.75919 -10.64002 -10.54222 -10.36869 -10.13312 -9.98394 -9.80652 -9.69695 -9.27223 -8.89695 -8.87849 -6.93534 -5.78185 -3.06628 0.77915 1.85974 2.37078 2.97478 3.06558 3.38257 3.42888 3.48840 3.50924 4.06080 4.26070 4.50020 4.57431 4.58500 4.81152 4.86421 4.91821 4.98747 5.10700 5.17737 5.28183 5.35539 5.43524 5.50042 5.56592 5.61353 5.70611 5.77326 5.91932 5.92775 5.96047 6.06874 6.19805 6.31677 6.38768 6.47382 6.63559 6.70954 6.75006 6.84301 7.33619 7.70060 7.93381 8.40888 9.52255 10.09377 10.44091 11.44894 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.040928 B = 0.002166 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.961618 B =12921.864043 C =13424.849593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.712 5.712 16 C 0.599 3.401 17 O -0.519 6.519 18 C -0.063 4.063 19 O -0.166 6.166 20 C 0.015 3.985 21 C -0.240 4.240 22 C -0.086 4.086 23 C -0.088 4.088 24 C 0.062 3.938 25 O -0.379 6.379 26 C 0.136 3.864 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.212 0.788 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 1.143 28.602 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.362 5.362 16 C 0.385 3.615 17 O -0.398 6.398 18 C -0.114 4.114 19 O -0.062 6.062 20 C -0.054 4.054 21 C -0.242 4.242 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.014 4.014 25 O -0.298 6.298 26 C 0.059 3.941 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.241 0.759 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.512 0.302 28.376 28.382 hybrid contribution -0.139 0.703 -1.175 1.376 sum 0.372 1.004 27.201 27.222 Atomic orbital electron populations 1.21802 0.94579 1.02021 1.01585 1.21564 0.96818 1.00573 0.94055 0.90423 1.20572 0.96639 0.94217 0.85306 1.42345 1.66959 1.27666 1.00589 1.19283 1.28591 1.05411 0.83616 0.91074 1.24746 1.01043 0.97433 0.97899 1.69664 1.43638 1.16615 1.28387 0.86102 0.77589 0.77835 0.84588 1.20530 1.21876 1.21887 1.21526 1.00433 0.95322 0.82488 1.45989 1.56696 1.27958 1.05575 1.16497 0.79836 0.83952 0.81224 1.90872 1.40323 1.22940 1.85622 1.21491 1.04777 0.89561 0.95604 1.84329 1.58455 1.34113 1.29340 1.23634 1.01436 1.00258 0.80093 1.21025 1.06366 0.98006 0.98793 1.20146 0.99773 0.97977 0.90962 1.20852 1.00852 0.95007 0.95754 1.22718 0.87204 0.99706 0.91803 1.87988 1.46962 1.31284 1.63536 1.21033 1.00924 0.84938 0.87180 0.91042 0.92736 0.93893 0.96063 0.95915 0.78197 0.93574 0.90888 0.90878 0.75890 0.77110 0.88356 0.89042 0.92736 0.87974 0.87571 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.94 37.15 0.33 -1.79 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.16 3.17 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.26 5.33 -59.91 -0.32 -18.58 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 15 N -0.71 -8.87 5.28 -61.63 -0.33 -9.19 16 16 C 0.60 8.18 7.78 -12.86 -0.10 8.08 16 17 O -0.52 -8.33 15.63 5.20 0.08 -8.25 16 18 C -0.06 -0.76 7.11 -37.27 -0.27 -1.03 16 19 O -0.17 -1.72 10.44 2.35 0.02 -1.69 16 20 C 0.02 0.11 12.06 29.21 0.35 0.47 16 21 C -0.24 -2.13 6.04 -105.02 -0.63 -2.77 16 22 C -0.09 -0.96 6.02 -104.70 -0.63 -1.59 16 23 C -0.09 -0.87 5.69 -27.64 -0.16 -1.03 16 24 C 0.06 0.49 6.76 37.51 0.25 0.75 16 25 O -0.38 -3.50 10.70 -35.23 -0.38 -3.88 16 26 C 0.14 0.94 7.27 36.02 0.26 1.21 16 27 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.53 7.18 -51.93 -0.37 0.16 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.38 9.98 6.85 -40.82 -0.28 9.70 16 33 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 4.43 7.42 -40.82 -0.30 4.13 16 37 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.10 1.02 7.63 -51.93 -0.40 0.62 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -33.63 357.63 -7.27 -40.89 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.34 Total: 7.41 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.10 Total: -2.13 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.08 Total: -55.17 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.27 Total: -13.82 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.63 -7.27 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698762730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.900 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds