Wall clock time and date at job start Tue Mar 31 2020 09:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35802 * 116.99697 * 2 1 4 4 C 1.38831 * 119.93038 * 0.02562 * 3 2 1 5 5 C 1.37790 * 120.14820 * 179.71948 * 4 3 2 6 6 C 1.39702 * 120.00574 * 0.52287 * 5 4 3 7 7 C 1.47603 * 120.06969 * 179.76356 * 6 5 4 8 8 O 1.21593 * 119.99735 * 179.72067 * 7 6 5 9 9 N 1.34777 * 120.00254 * 359.44599 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27885 * 9 7 6 11 11 H 1.09001 * 109.47451 * 34.99522 * 10 9 7 12 12 C 1.52997 * 109.46930 * 274.99613 * 10 9 7 13 13 C 1.53001 * 109.47114 * 154.99905 * 10 9 7 14 14 N 1.46507 * 109.46831 * 304.99415 * 13 10 9 15 15 C 1.36930 * 119.99753 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00041 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00141 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99583 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00341 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47358 * 59.99259 * 19 17 15 21 21 H 1.48497 * 109.47252 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46753 * 299.99487 * 19 17 15 23 23 C 1.39730 * 119.85422 * 359.48390 * 6 5 4 24 24 C 1.38143 * 119.85271 * 0.25443 * 23 6 5 25 25 O 1.35997 * 120.00130 * 179.97438 * 24 23 6 26 26 C 1.42898 * 117.00110 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46990 * 60.00244 * 1 2 3 28 28 H 1.09000 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47190 * 300.00193 * 1 2 3 30 30 H 1.08002 * 119.92509 * 359.97438 * 4 3 2 31 31 H 1.08009 * 119.99642 * 180.25541 * 5 4 3 32 32 H 0.96990 * 119.99728 * 0.27163 * 9 7 6 33 33 H 1.09001 * 109.46979 * 300.00198 * 12 10 9 34 34 H 1.09000 * 109.47470 * 59.99994 * 12 10 9 35 35 H 1.08998 * 109.47338 * 180.02562 * 12 10 9 36 36 H 1.08998 * 109.47177 * 64.99608 * 13 10 9 37 37 H 1.09000 * 109.47058 * 185.00257 * 13 10 9 38 38 H 0.97002 * 120.00137 * 0.02562 * 14 13 10 39 39 H 0.97001 * 119.99346 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.07316 * 180.23814 * 23 6 5 41 41 H 1.09001 * 109.46922 * 60.00458 * 26 25 24 42 42 H 1.09006 * 109.47135 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47818 * 300.00320 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3734 0.0005 5 6 1.9087 3.6035 0.0064 6 6 3.3035 3.6822 0.0007 7 6 3.9700 4.9992 0.0017 8 8 5.1841 5.0661 0.0019 9 7 3.2329 6.1275 -0.0033 10 6 3.8945 7.4347 -0.0085 11 1 4.8099 7.3763 -0.5973 12 6 4.2364 7.8389 1.4270 13 6 2.9586 8.4775 -0.6228 14 7 2.5362 8.0314 -1.9528 15 6 1.6898 8.8076 -2.6985 16 1 1.3340 9.7490 -2.3064 17 6 1.2891 8.3847 -3.9585 18 7 1.7232 7.2377 -4.4365 19 14 0.1351 9.4440 -4.9762 20 1 0.7658 10.7651 -5.2249 21 1 -0.1384 8.7734 -6.2726 22 1 -1.1401 9.6351 -4.2396 23 6 4.0662 2.5114 0.0001 24 6 3.4377 1.2813 -0.0003 25 8 4.1771 0.1399 -0.0015 26 6 5.5984 0.2876 -0.0028 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2095 2.3141 0.0005 31 1 1.3169 4.5070 0.0109 32 1 2.2644 6.0741 -0.0035 33 1 3.3209 7.8973 2.0158 34 1 4.9031 7.0959 1.8647 35 1 4.7282 8.8116 1.4232 36 1 2.0828 8.6001 0.0145 37 1 3.4819 9.4298 -0.7083 38 1 2.8554 7.1857 -2.3048 39 1 1.4435 6.9424 -5.3171 40 1 5.1447 2.5681 -0.0004 41 1 5.9075 0.8358 0.8871 42 1 6.0660 -0.6971 -0.0041 43 1 5.9059 0.8366 -0.8928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699387666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:28 Heat of formation + Delta-G solvation = -69.853520 kcal Electronic energy + Delta-G solvation = -25371.939074 eV Core-core repulsion = 21611.645934 eV Total energy + Delta-G solvation = -3760.293140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77909 -39.43377 -38.57862 -36.75217 -36.00153 -33.65857 -31.66942 -30.52122 -30.41974 -29.66822 -27.43498 -27.31236 -25.68625 -23.69350 -22.63352 -22.18577 -20.92511 -20.11345 -18.84928 -17.69621 -17.14028 -16.82884 -16.27140 -16.21726 -15.69887 -15.37301 -14.89964 -14.80307 -14.60101 -14.56487 -13.91934 -13.67900 -13.32396 -13.17558 -12.82792 -12.71165 -12.36324 -12.26551 -12.21315 -12.12125 -11.61323 -11.50365 -11.32386 -11.25083 -11.05102 -10.90399 -10.82828 -10.47479 -10.09134 -9.75428 -9.65907 -8.93277 -8.88058 -8.69770 -7.93522 -6.97926 -5.79096 -3.09408 0.87694 1.25876 3.00346 3.06834 3.14574 3.41244 3.45858 3.47189 3.48296 3.89899 4.55603 4.63660 4.79649 4.83188 4.98671 5.00776 5.02547 5.10937 5.19378 5.22081 5.28754 5.32054 5.42619 5.49252 5.52853 5.54775 5.65687 5.90827 6.00809 6.09747 6.12242 6.19434 6.26794 6.40067 6.43813 6.48689 6.69078 6.87906 6.94664 7.41110 7.65926 7.86696 8.38407 8.52677 9.50153 10.06120 10.41628 11.42939 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003745 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.248617 B = 7474.584584 C = 8770.116350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.121 3.879 4 C -0.180 4.180 5 C -0.072 4.072 6 C -0.127 4.127 7 C 0.563 3.437 8 O -0.549 6.549 9 N -0.704 5.704 10 C 0.133 3.867 11 H 0.088 0.912 12 C -0.157 4.157 13 C 0.144 3.856 14 N -0.732 5.732 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.114 4.114 24 C 0.087 3.913 25 O -0.307 6.307 26 C 0.024 3.976 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.403 0.597 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.034 0.966 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.148 0.852 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -13.234 13.141 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.075 3.925 4 C -0.199 4.199 5 C -0.091 4.091 6 C -0.130 4.130 7 C 0.350 3.650 8 O -0.428 6.428 9 N -0.355 5.355 10 C 0.028 3.972 11 H 0.106 0.894 12 C -0.216 4.216 13 C 0.016 3.984 14 N -0.377 5.377 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.134 4.134 24 C 0.041 3.959 25 O -0.221 6.221 26 C -0.071 4.071 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.239 0.761 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.166 0.834 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.402 -13.418 13.071 18.784 hybrid contribution -1.119 0.645 -0.874 1.560 sum 0.282 -12.773 12.196 17.663 Atomic orbital electron populations 1.23121 0.78333 1.04042 1.01618 1.86126 1.21246 1.25955 1.88455 1.18458 0.89104 0.85248 0.99668 1.20993 1.00258 0.91096 1.07555 1.21096 0.93322 0.97776 0.96871 1.19671 0.93406 0.93303 1.06638 1.18044 0.86823 0.83958 0.76185 1.90731 1.13557 1.87589 1.50920 1.45896 1.10521 1.05369 1.73732 1.21274 0.97421 0.82087 0.96378 0.89393 1.22101 1.01549 1.01590 0.96360 1.20991 0.94816 0.94490 0.88116 1.42363 1.56772 1.24700 1.13869 1.19171 1.20003 1.01276 0.97174 0.91188 1.24752 1.00910 0.97370 0.97659 1.69667 1.48382 1.21115 1.18639 0.86271 0.80704 0.79553 0.79641 1.21249 1.21695 1.21275 1.21123 1.01105 0.89641 1.01493 1.18035 0.88202 0.86013 1.03619 1.86148 1.18838 1.27794 1.89327 1.23100 0.78466 1.03793 1.01735 0.92282 0.88186 0.92521 0.84093 0.84687 0.76089 0.92569 0.92395 0.91601 0.95789 0.94795 0.77950 0.93410 0.83431 0.92548 0.88210 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.83 10.27 -33.78 -0.35 -4.17 16 3 C 0.12 1.64 6.71 -38.93 -0.26 1.38 16 4 C -0.18 -2.21 9.01 -39.53 -0.36 -2.56 16 5 C -0.07 -0.97 9.53 -39.20 -0.37 -1.34 16 6 C -0.13 -1.96 5.87 -104.97 -0.62 -2.57 16 7 C 0.56 9.83 7.73 -12.44 -0.10 9.73 16 8 O -0.55 -10.97 16.00 5.28 0.08 -10.88 16 9 N -0.70 -11.63 4.47 -54.82 -0.24 -11.88 16 10 C 0.13 2.26 2.73 -67.93 -0.19 2.07 16 11 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 12 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 13 C 0.14 2.78 5.82 -4.04 -0.02 2.76 16 14 N -0.73 -18.07 5.43 -59.90 -0.33 -18.39 16 15 C -0.25 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 19 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.11 -1.67 8.58 -39.06 -0.33 -2.00 16 24 C 0.09 1.23 6.69 -39.18 -0.26 0.97 16 25 O -0.31 -4.12 10.28 -34.39 -0.35 -4.47 16 26 C 0.02 0.23 9.81 101.05 0.99 1.22 16 27 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 30 H 0.14 1.33 6.27 -52.49 -0.33 1.00 16 31 H 0.14 1.64 6.39 -52.48 -0.34 1.31 16 32 H 0.40 6.23 6.62 -40.82 -0.27 5.96 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 10.25 7.33 -40.82 -0.30 9.95 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.15 2.07 5.87 -52.49 -0.31 1.76 16 41 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -33.94 361.46 -6.49 -40.43 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.03 Total: 12.25 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.42 Total: 1.77 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.15 Total: -57.43 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.62 Total: -19.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.94 -6.49 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699387666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.421 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds