Wall clock time and date at job start Tue Mar 31 2020 09:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 117.00225 * 2 1 4 4 C 1.38701 * 119.99934 * 180.02562 * 3 2 1 5 5 C 1.38130 * 119.99962 * 180.28437 * 4 3 2 6 6 C 1.38698 * 119.99507 * 359.48187 * 5 4 3 7 7 O 1.35995 * 119.99843 * 180.24049 * 6 5 4 8 8 C 1.42901 * 116.99510 * 0.27494 * 7 6 5 9 9 C 1.50702 * 109.46551 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00096 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99590 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99378 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47545 * 35.00913 * 12 11 9 14 14 C 1.52997 * 109.47328 * 275.00064 * 12 11 9 15 15 C 1.53007 * 109.46766 * 155.00369 * 12 11 9 16 16 N 1.46505 * 109.46850 * 305.00298 * 15 12 11 17 17 C 1.36937 * 119.99696 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99887 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00168 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99928 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47238 * 89.99842 * 21 19 17 23 23 H 1.48495 * 109.47401 * 209.99610 * 21 19 17 24 24 H 1.48497 * 109.47362 * 329.99755 * 21 19 17 25 25 C 1.38692 * 120.00539 * 0.51821 * 6 5 4 26 26 C 1.38135 * 119.99780 * 359.74040 * 25 6 5 27 27 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46663 * 299.99591 * 1 2 3 29 29 H 1.08995 * 109.47194 * 59.99069 * 1 2 3 30 30 H 1.08002 * 119.99807 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.00378 * 179.72321 * 5 4 3 32 32 H 1.08998 * 109.47223 * 299.99870 * 8 7 6 33 33 H 1.08999 * 109.46872 * 60.00367 * 8 7 6 34 34 H 0.96993 * 120.00068 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.47157 * 300.00204 * 14 12 11 36 36 H 1.08994 * 109.47131 * 60.00514 * 14 12 11 37 37 H 1.09004 * 109.46929 * 180.02562 * 14 12 11 38 38 H 1.09004 * 109.46899 * 64.99511 * 15 12 11 39 39 H 1.08994 * 109.47093 * 185.00103 * 15 12 11 40 40 H 0.96997 * 120.00138 * 359.97438 * 16 15 12 41 41 H 0.96992 * 120.00663 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.00584 * 179.72361 * 25 6 5 43 43 H 1.08005 * 120.00105 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0587 2.5148 0.0054 6 6 3.3033 3.6780 0.0010 7 8 3.9207 4.8897 0.0019 8 6 5.3497 4.8896 0.0014 9 6 5.8520 6.3104 0.0032 10 8 5.0639 7.2323 0.0052 11 7 7.1772 6.5566 0.0035 12 6 7.6655 7.9379 0.0047 13 1 6.9929 8.5606 0.5947 14 6 7.7171 8.4618 -1.4319 15 6 9.0681 7.9824 0.6144 16 7 9.0415 7.3709 1.9455 17 6 10.1896 7.2972 2.6881 18 1 11.1146 7.6902 2.2928 19 6 10.1643 6.7183 3.9496 20 7 11.2679 6.6470 4.6632 21 14 8.5643 6.0393 4.6337 22 1 8.4274 4.6118 4.2482 23 1 8.5708 6.1537 6.1142 24 1 7.4226 6.8125 4.0826 25 6 1.9183 3.6056 0.0016 26 6 1.2911 2.3748 0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 4.0197 0.3783 -0.0005 31 1 5.1372 2.5713 0.0095 32 1 5.7134 4.3749 0.8907 33 1 5.7126 4.3766 -0.8893 34 1 7.8074 5.8194 0.0022 35 1 8.3897 7.8391 -2.0218 36 1 6.7179 8.4301 -1.8663 37 1 8.0808 9.4894 -1.4310 38 1 9.7595 7.4325 -0.0242 39 1 9.3956 9.0186 0.6971 40 1 8.2104 7.0190 2.3010 41 1 11.2504 6.2422 5.5445 42 1 1.3300 4.5113 0.0027 43 1 0.2125 2.3183 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699390410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:41 Heat of formation + Delta-G solvation = -66.476197 kcal Electronic energy + Delta-G solvation = -24626.031772 eV Core-core repulsion = 20865.885085 eV Total energy + Delta-G solvation = -3760.146688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75269 -39.88589 -38.90422 -36.69492 -36.13659 -33.81670 -31.86422 -31.49782 -30.61855 -29.70851 -28.36053 -27.05203 -26.01067 -23.24483 -22.52869 -22.06612 -21.07051 -20.34674 -18.79299 -17.99781 -17.91199 -17.15304 -16.49750 -16.31649 -16.01060 -15.92488 -15.07980 -14.82482 -14.73606 -14.30555 -14.08011 -13.91699 -13.54446 -13.28525 -13.03239 -12.80657 -12.72194 -12.62923 -12.43785 -12.32161 -12.13208 -11.92285 -11.79006 -11.15645 -11.01946 -10.93674 -10.69790 -10.56418 -10.20646 -9.77253 -9.66871 -9.38412 -9.02587 -8.94268 -7.99904 -7.33143 -5.83825 -3.20531 0.95864 1.19978 2.49465 2.60911 2.98410 3.30625 3.37118 3.41179 3.45395 3.64124 4.45069 4.51217 4.52654 4.57135 4.72720 4.78815 4.79404 4.87463 4.92318 5.01463 5.05608 5.10078 5.27887 5.33389 5.43238 5.51084 5.58287 5.69133 5.76374 5.85764 5.98143 6.00823 6.05283 6.24339 6.26080 6.29837 6.51875 6.71503 6.96196 7.20194 7.56963 7.90996 8.24445 8.34826 9.12980 9.85160 10.04235 11.34266 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.003009 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.809662 B = 9301.896204 C =10668.676852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.086 3.914 4 C -0.109 4.109 5 C -0.170 4.170 6 C 0.097 3.903 7 O -0.288 6.288 8 C 0.038 3.962 9 C 0.515 3.485 10 O -0.523 6.523 11 N -0.712 5.712 12 C 0.131 3.869 13 H 0.089 0.911 14 C -0.158 4.158 15 C 0.149 3.851 16 N -0.756 5.756 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.880 3.120 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.277 1.277 25 C -0.109 4.109 26 C -0.167 4.167 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.406 0.594 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.136 0.864 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.190 -10.933 -13.900 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.042 3.958 4 C -0.128 4.128 5 C -0.189 4.189 6 C 0.052 3.948 7 O -0.201 6.201 8 C -0.040 4.040 9 C 0.300 3.700 10 O -0.398 6.398 11 N -0.365 5.365 12 C 0.027 3.973 13 H 0.107 0.893 14 C -0.217 4.217 15 C 0.021 3.979 16 N -0.402 5.402 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.579 5.579 21 Si 0.710 3.290 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.203 1.203 25 C -0.128 4.128 26 C -0.186 4.186 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.241 0.759 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.154 0.846 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.517 -10.214 -13.819 26.004 hybrid contribution -0.766 -0.923 0.722 1.400 sum -20.283 -11.137 -13.097 26.589 Atomic orbital electron populations 1.23038 0.78553 1.03873 1.01305 1.86074 1.21205 1.26704 1.89342 1.18903 0.92289 0.84249 1.00375 1.20215 0.91395 0.98068 1.03119 1.21145 1.00400 0.91392 1.05938 1.18957 0.92359 0.84123 0.99354 1.86170 1.18959 1.26090 1.88896 1.22526 0.80828 0.96701 1.03990 1.19939 0.83034 0.89982 0.77089 1.90729 1.55159 1.45653 1.48277 1.45914 1.05973 1.09925 1.74731 1.21357 0.97146 0.81846 0.96916 0.89323 1.22095 1.02095 1.01505 0.95958 1.20981 0.91998 0.97836 0.87070 1.42716 1.09064 1.72857 1.15561 1.19043 0.88296 1.33241 0.97166 0.89073 1.24667 0.96467 1.00943 0.96807 1.69689 1.25888 1.49909 1.12405 0.86612 0.84428 0.79124 0.78786 1.21009 1.21542 1.20322 1.20226 0.91388 0.98161 1.03025 1.21047 1.00067 0.91330 1.06159 0.88316 0.92682 0.92720 0.84747 0.84484 0.88778 0.88908 0.75939 0.92306 0.92324 0.91310 0.94740 0.93832 0.80470 0.92953 0.84626 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.07 10.50 -19.68 -0.21 -3.28 16 3 C 0.09 0.90 6.69 -39.24 -0.26 0.63 16 4 C -0.11 -1.12 9.98 -39.45 -0.39 -1.51 16 5 C -0.17 -1.79 9.03 -39.45 -0.36 -2.15 16 6 C 0.10 1.19 6.69 -39.24 -0.26 0.93 16 7 O -0.29 -4.06 9.67 -39.64 -0.38 -4.45 16 8 C 0.04 0.46 5.22 36.01 0.19 0.64 16 9 C 0.52 7.79 7.87 -10.98 -0.09 7.71 16 10 O -0.52 -9.95 16.16 -14.36 -0.23 -10.18 16 11 N -0.71 -10.03 4.52 -53.80 -0.24 -10.28 16 12 C 0.13 2.00 2.73 -67.93 -0.19 1.81 16 13 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 14 C -0.16 -1.96 9.48 37.16 0.35 -1.60 16 15 C 0.15 2.65 5.82 -4.04 -0.02 2.62 16 16 N -0.76 -17.12 5.24 -59.90 -0.31 -17.44 16 17 C -0.25 -6.79 10.47 -15.06 -0.16 -6.95 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 21 Si 0.88 21.88 27.74 -169.99 -4.71 17.17 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 25 C -0.11 -1.20 9.98 -39.45 -0.39 -1.60 16 26 C -0.17 -1.60 9.03 -39.45 -0.36 -1.95 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.16 6.29 -52.49 -0.33 0.83 16 32 H 0.09 1.00 7.65 -51.93 -0.40 0.60 16 33 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.41 5.00 8.60 -40.82 -0.35 4.65 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.36 8.22 5.20 -40.82 -0.21 8.01 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.13 0.93 6.29 -52.48 -0.33 0.60 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -35.15 362.77 -7.08 -42.23 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.18 Total: 8.94 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.04 Total: -0.15 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.22 Total: -55.73 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.82 Total: -17.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.15 -7.08 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699390410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.249 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds