Wall clock time and date at job start Tue Mar 31 2020 09:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47205 * 2 1 4 4 C 1.50692 * 109.47182 * 120.00631 * 2 1 3 5 5 O 1.21282 * 120.00008 * 29.07632 * 4 2 1 6 6 N 1.34779 * 119.99972 * 209.08156 * 4 2 1 7 7 C 1.46918 * 120.63012 * 4.55511 * 6 4 2 8 8 C 1.52763 * 109.00628 * 233.58321 * 7 6 4 9 9 C 1.53037 * 109.38622 * 305.58739 * 8 7 6 10 10 C 1.53044 * 109.53586 * 61.23686 * 9 8 7 11 11 H 1.08996 * 109.52110 * 58.60874 * 10 9 8 12 12 C 1.53005 * 109.49484 * 178.68512 * 10 9 8 13 13 N 1.46494 * 109.47266 * 294.84067 * 12 10 9 14 14 C 1.36942 * 120.00077 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99625 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00063 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99701 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00016 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47250 * 90.00478 * 18 16 14 20 20 H 1.48501 * 109.47353 * 210.00287 * 18 16 14 21 21 H 1.48504 * 109.47459 * 330.00523 * 18 16 14 22 22 C 1.46933 * 120.63014 * 184.83188 * 6 4 2 23 23 C 1.53005 * 109.46930 * 240.00682 * 2 1 3 24 24 F 1.39900 * 109.47459 * 59.99908 * 23 2 1 25 25 F 1.39905 * 109.46946 * 180.02562 * 23 2 1 26 26 F 1.39910 * 109.46939 * 299.99780 * 23 2 1 27 27 H 1.08995 * 109.47558 * 295.21265 * 1 2 3 28 28 H 1.09007 * 109.46938 * 55.21229 * 1 2 3 29 29 H 1.09002 * 109.47465 * 175.21013 * 1 2 3 30 30 H 1.09000 * 109.58837 * 353.41502 * 7 6 4 31 31 H 1.08999 * 109.59098 * 113.84462 * 7 6 4 32 32 H 1.09001 * 109.56476 * 185.55325 * 8 7 6 33 33 H 1.08999 * 109.38512 * 65.51676 * 8 7 6 34 34 H 1.09005 * 109.46016 * 301.22066 * 9 8 7 35 35 H 1.08997 * 109.46708 * 181.25930 * 9 8 7 36 36 H 1.09003 * 109.46798 * 54.84296 * 12 10 9 37 37 H 1.09003 * 109.46793 * 174.84029 * 12 10 9 38 38 H 0.96998 * 120.00407 * 359.97438 * 13 12 10 39 39 H 0.97007 * 119.99396 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.58748 * 246.15780 * 22 6 4 41 41 H 1.09004 * 109.58478 * 6.58361 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 1.3690 -1.5915 1.7351 6 7 3.2187 -0.3669 1.7698 7 6 3.9869 0.7634 1.2305 8 6 5.4010 0.2905 0.8984 9 6 6.0232 -0.3592 2.1365 10 6 5.1901 -1.5746 2.5501 11 1 5.1488 -2.2856 1.7250 12 6 5.8313 -2.2426 3.7682 13 7 7.1408 -2.7834 3.3957 14 6 7.9050 -3.4310 4.3295 15 1 7.5423 -3.5427 5.3407 16 6 9.1456 -3.9440 3.9764 17 7 9.5876 -3.8074 2.7442 18 14 10.1882 -4.8267 5.2504 19 1 9.8628 -6.2756 5.2385 20 1 11.6259 -4.6397 4.9292 21 1 9.9047 -4.2668 6.5963 22 6 3.7711 -1.1193 2.9045 23 6 2.0399 -0.7211 -1.2494 24 9 1.5736 -0.0616 -2.3916 25 9 3.4390 -0.7216 -1.2491 26 9 1.5736 -2.0402 -1.2495 27 1 -0.3634 0.4377 0.9297 28 1 -0.3633 0.5864 -0.8441 29 1 -0.3634 -1.0241 -0.0858 30 1 3.5052 1.1341 0.3257 31 1 4.0359 1.5596 1.9733 32 1 6.0078 1.1420 0.5907 33 1 5.3582 -0.4375 0.0883 34 1 6.0436 0.3621 2.9536 35 1 7.0404 -0.6770 1.9076 36 1 5.9547 -1.5069 4.5630 37 1 5.1902 -3.0517 4.1182 38 1 7.4664 -2.6835 2.4875 39 1 10.4548 -4.1655 2.4976 40 1 3.8020 -0.4798 3.7866 41 1 3.1469 -1.9905 3.1038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752805833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:38 Heat of formation + Delta-G solvation = -184.928948 kcal Electronic energy + Delta-G solvation = -27032.665175 eV Core-core repulsion = 22725.525250 eV Total energy + Delta-G solvation = -4307.139925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.40317 -47.90927 -47.82316 -40.52742 -37.92035 -35.09851 -34.23402 -32.72040 -31.77789 -29.96675 -26.94678 -25.74318 -25.64374 -23.51621 -22.62489 -21.80830 -20.05717 -19.49538 -18.95066 -18.59414 -17.80670 -17.29093 -17.04123 -15.96563 -15.07187 -14.91654 -14.85058 -14.60956 -14.44308 -14.28364 -14.26114 -13.97881 -13.92634 -13.87004 -13.68051 -13.42933 -13.19628 -13.07886 -12.70869 -12.53973 -12.25561 -12.10676 -11.91363 -11.59963 -11.03592 -10.90742 -10.82193 -10.69595 -10.39440 -10.21444 -10.12212 -9.91047 -9.68864 -8.87388 -8.74289 -6.91057 -5.75792 -3.04254 1.86132 2.61421 2.67364 3.44075 3.44606 3.49696 3.51192 3.60900 3.68036 4.18261 4.39828 4.43996 4.59825 4.73369 4.94366 4.98616 5.12869 5.17402 5.25380 5.28573 5.41912 5.53826 5.58982 5.69040 5.78025 5.86952 5.91951 6.02539 6.18240 6.19204 6.40499 6.45826 6.64843 6.78214 6.87682 7.13805 7.71053 7.81937 8.43196 9.54437 10.12106 10.46815 11.47157 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.003259 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.913368 B = 8589.275536 C = 8775.085510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 H 0.135 0.865 4 C 0.518 3.482 5 O -0.516 6.516 6 N -0.598 5.598 7 C 0.103 3.897 8 C -0.137 4.137 9 C -0.111 4.111 10 C -0.108 4.108 11 H 0.075 0.925 12 C 0.161 3.839 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.120 3.880 23 C 0.464 3.536 24 F -0.178 7.178 25 F -0.173 7.173 26 F -0.171 7.171 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.072 0.928 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.725 14.193 -8.353 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.187 4.187 3 H 0.152 0.848 4 C 0.302 3.698 5 O -0.392 6.392 6 N -0.330 5.330 7 C -0.020 4.020 8 C -0.175 4.175 9 C -0.149 4.149 10 C -0.127 4.127 11 H 0.093 0.907 12 C 0.032 3.968 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.002 4.002 23 C 0.409 3.591 24 F -0.159 7.159 25 F -0.155 7.155 26 F -0.152 7.152 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.004 13.632 -7.936 23.936 hybrid contribution 1.009 -0.484 0.060 1.121 sum -16.995 13.148 -7.876 22.885 Atomic orbital electron populations 1.21714 0.88848 1.05026 1.04141 1.22741 1.01998 1.02710 0.91291 0.84755 1.19715 0.81619 0.83639 0.84786 1.90748 1.55769 1.30779 1.61859 1.48122 1.18977 1.32230 1.33696 1.21833 0.93090 0.88204 0.98827 1.21899 0.94448 1.01501 0.99677 1.21535 1.00356 0.96559 0.96425 1.21689 0.93107 0.97649 1.00278 0.90691 1.20577 0.88019 0.95000 0.93172 1.42339 1.15699 1.67625 1.11832 1.19235 0.97759 1.27885 0.92143 0.91186 1.24732 0.97955 1.01763 0.96532 1.69663 1.20384 1.51217 1.16988 0.86186 0.79740 0.79643 0.80598 1.21732 1.21798 1.20770 1.21737 0.94875 0.96696 0.86931 1.20031 0.75911 0.78163 0.84983 1.93198 1.88493 1.80719 1.53500 1.93247 1.29178 1.96352 1.96675 1.93249 1.88298 1.36982 1.96676 0.89908 0.90457 0.90018 0.90503 0.90682 0.90598 0.90973 0.91986 0.90060 0.96128 0.96179 0.78199 0.93538 0.90949 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.45 37.16 0.31 -0.74 16 2 C -0.16 -1.47 2.06 -91.77 -0.19 -1.66 16 3 H 0.13 0.78 6.04 -51.93 -0.31 0.47 16 4 C 0.52 6.47 6.23 -10.99 -0.07 6.40 16 5 O -0.52 -8.23 15.69 5.56 0.09 -8.14 16 6 N -0.60 -7.14 2.98 -173.03 -0.52 -7.65 16 7 C 0.10 0.95 5.47 -3.94 -0.02 0.93 16 8 C -0.14 -1.54 6.00 -26.83 -0.16 -1.70 16 9 C -0.11 -1.60 5.06 -26.69 -0.13 -1.74 16 10 C -0.11 -1.73 2.37 -90.50 -0.21 -1.94 16 11 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 12 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 13 N -0.73 -18.43 5.32 -59.91 -0.32 -18.75 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 18 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.12 1.64 5.71 -3.71 -0.02 1.61 16 23 C 0.46 4.91 2.68 37.16 0.10 5.01 16 24 F -0.18 -1.70 16.89 2.25 0.04 -1.66 16 25 F -0.17 -2.01 14.27 2.25 0.03 -1.98 16 26 F -0.17 -2.21 16.42 2.25 0.04 -2.17 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.42 7.94 -51.93 -0.41 0.01 16 29 H 0.08 0.75 7.54 -51.93 -0.39 0.36 16 30 H 0.08 0.54 4.81 -51.93 -0.25 0.29 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.91 6.87 -51.93 -0.36 0.55 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.41 7.16 -51.93 -0.37 1.04 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 10.15 6.86 -40.82 -0.28 9.87 16 39 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.42 7.04 -51.93 -0.37 1.06 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -32.57 336.22 -6.21 -38.78 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.67 Total: 4.62 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.67 Total: 1.97 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.11 Total: -53.98 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.81 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.57 -6.21 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752805833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.154 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds