Wall clock time and date at job start Tue Mar 31 2020 09:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36004 * 117.00262 * 2 1 4 4 C 1.38472 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.38502 * 120.32850 * 179.97438 * 4 3 2 6 6 C 1.37781 * 120.34889 * 0.04342 * 5 4 3 7 7 C 1.39765 * 120.00226 * 359.95325 * 6 5 4 8 8 C 1.47539 * 120.16856 * 179.74688 * 7 6 5 9 9 O 1.21589 * 120.00225 * 179.97438 * 8 7 6 10 10 N 1.34782 * 120.00121 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00036 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47118 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47103 * 295.00009 * 12 11 10 14 14 C 1.52990 * 109.47330 * 174.99635 * 12 11 10 15 15 N 1.46505 * 109.47162 * 54.99605 * 12 11 10 16 16 C 1.36934 * 120.00276 * 205.00398 * 15 12 11 17 17 H 1.08004 * 119.99805 * 359.97438 * 16 15 12 18 18 C 1.38808 * 120.00175 * 180.02562 * 16 15 12 19 19 N 1.31613 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46802 * 89.99695 * 20 18 16 22 22 H 1.48490 * 109.47213 * 209.99692 * 20 18 16 23 23 H 1.48502 * 109.47156 * 329.99797 * 20 18 16 24 24 C 1.39130 * 120.00450 * 179.97438 * 3 2 1 25 25 O 1.35743 * 120.17069 * 0.04785 * 24 3 2 26 26 C 1.42901 * 116.99876 * 269.97488 * 25 24 3 27 27 H 1.08996 * 109.47123 * 300.00039 * 1 2 3 28 28 H 1.09005 * 109.46744 * 60.00115 * 1 2 3 29 29 H 1.08997 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.83508 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.82316 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.00423 * 179.97438 * 6 5 4 33 33 H 0.96997 * 119.99482 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.46851 * 299.99291 * 11 10 8 35 35 H 1.08994 * 109.47713 * 59.99863 * 11 10 8 36 36 H 1.09011 * 109.47222 * 59.99972 * 14 12 11 37 37 H 1.09000 * 109.47343 * 179.97438 * 14 12 11 38 38 H 1.09004 * 109.47333 * 300.00233 * 14 12 11 39 39 H 0.97002 * 119.99668 * 24.99816 * 15 12 11 40 40 H 0.97005 * 120.00315 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.47355 * 299.99424 * 26 25 24 42 42 H 1.08990 * 109.47118 * 60.00421 * 26 25 24 43 43 H 1.09000 * 109.47076 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2924 2.3731 0.0005 5 6 1.9141 3.6108 0.0011 6 6 3.2891 3.6991 0.0002 7 6 4.0641 2.5360 -0.0003 8 6 5.5367 2.6263 -0.0069 9 8 6.2080 1.6125 -0.0068 10 7 6.1380 3.8326 -0.0119 11 6 7.6002 3.9222 -0.0191 12 6 8.0210 5.3932 -0.0244 13 1 7.6989 5.8599 -0.9554 14 6 9.5433 5.4887 0.0940 15 7 7.3988 6.0832 1.1084 16 6 7.1868 7.4350 1.0541 17 1 7.4786 7.9925 0.1764 18 6 6.5979 8.0888 2.1276 19 7 6.2427 7.4094 3.1975 20 14 6.3093 9.9329 2.0539 21 1 4.9685 10.2013 1.4747 22 1 6.3790 10.5000 3.4244 23 1 7.3510 10.5633 1.2037 24 6 3.4359 1.2846 0.0005 25 8 4.1786 0.1484 0.0001 26 6 4.5336 -0.3951 1.2731 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2141 2.3135 0.0005 31 1 1.3180 4.5114 0.0019 32 1 3.7681 4.6670 0.0002 33 1 5.6024 4.6413 -0.0116 34 1 7.9984 3.4333 0.8700 35 1 7.9901 3.4299 -0.9099 36 1 10.0062 4.9753 -0.7489 37 1 9.8431 6.5366 0.0897 38 1 9.8653 5.0220 1.0250 39 1 7.1370 5.5825 1.8968 40 1 5.8308 7.8662 3.9476 41 1 5.1184 0.3368 1.8304 42 1 3.6285 -0.6371 1.8300 43 1 5.1253 -1.2993 1.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752913807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:10 Heat of formation + Delta-G solvation = -67.158845 kcal Electronic energy + Delta-G solvation = -25696.359264 eV Core-core repulsion = 21936.182975 eV Total energy + Delta-G solvation = -3760.176290 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74708 -39.21783 -37.86274 -36.84012 -36.19676 -33.52543 -31.98352 -30.71671 -30.15596 -28.70622 -27.56401 -26.75353 -25.87005 -23.79360 -23.09816 -22.20340 -20.22916 -20.10442 -18.56738 -17.40818 -17.26160 -16.76859 -16.30981 -16.12955 -15.36457 -15.28364 -15.05318 -14.82899 -14.57612 -14.38412 -13.91206 -13.74170 -13.28992 -13.09385 -12.61119 -12.56702 -12.22666 -12.12746 -12.03987 -11.88269 -11.81170 -11.38257 -11.26534 -11.14196 -10.89988 -10.77491 -10.36220 -10.03617 -9.91985 -9.73962 -9.46161 -9.01208 -8.97408 -8.54383 -8.26034 -7.06894 -5.84019 -3.14415 0.72792 1.21356 2.94645 3.01495 3.37437 3.44102 3.45345 3.62023 3.65092 4.03856 4.52061 4.63772 4.75309 4.90290 4.92359 5.04840 5.11082 5.23381 5.33993 5.42744 5.46212 5.47086 5.52220 5.58302 5.60027 5.86867 5.94158 6.02082 6.09205 6.13350 6.18508 6.28941 6.33818 6.44130 6.56162 6.74809 6.84910 7.01613 7.04884 7.63593 7.66958 7.95833 8.33288 8.59408 9.45275 10.00254 10.36201 11.37765 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.003776 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.467982 B = 7412.532831 C = 8725.140146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.094 3.906 4 C -0.177 4.177 5 C -0.092 4.092 6 C -0.103 4.103 7 C -0.115 4.115 8 C 0.553 3.447 9 O -0.530 6.530 10 N -0.707 5.707 11 C 0.117 3.883 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.162 4.162 15 N -0.724 5.724 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.122 3.878 25 O -0.309 6.309 26 C 0.051 3.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.409 0.591 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -12.266 -6.340 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.049 3.951 4 C -0.196 4.196 5 C -0.110 4.110 6 C -0.122 4.122 7 C -0.118 4.118 8 C 0.339 3.661 9 O -0.408 6.408 10 N -0.359 5.359 11 C -0.008 4.008 12 C 0.049 3.951 13 H 0.072 0.928 14 C -0.223 4.223 15 N -0.367 5.367 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.075 3.925 25 O -0.224 6.224 26 C -0.043 4.043 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.057 -13.096 -6.522 17.753 hybrid contribution -0.837 1.640 0.611 1.940 sum -10.893 -11.456 -5.911 16.878 Atomic orbital electron populations 1.23088 0.78614 1.03984 1.01318 1.86172 1.21029 1.25975 1.88791 1.19287 0.91296 0.85090 0.99464 1.21300 1.00171 0.91869 1.06299 1.20921 0.94419 0.97228 0.98462 1.21349 0.93933 0.97825 0.99083 1.20262 0.94256 0.92700 1.04621 1.17909 0.86676 0.83973 0.77561 1.90776 1.65452 1.34978 1.49600 1.45904 1.08315 1.08109 1.73621 1.21701 0.79223 0.98285 1.01571 1.20522 0.92262 0.89377 0.92975 0.92830 1.22355 0.97999 1.01775 1.00145 1.42488 1.72022 1.05861 1.16316 1.19225 1.33291 0.84170 1.00711 0.91110 1.24733 1.01631 0.97840 0.96415 1.69665 1.47078 1.34720 1.06270 0.86225 0.77923 0.85498 0.76718 1.21719 1.21837 1.20791 1.17915 0.86167 0.86347 1.02022 1.85997 1.69905 1.37322 1.29200 1.22830 0.98810 0.98608 0.84079 0.92641 0.92605 0.88195 0.84782 0.84684 0.84220 0.75342 0.91732 0.91668 0.94154 0.92322 0.93191 0.78071 0.93463 0.93281 0.94376 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.81 10.28 -34.30 -0.35 -4.16 16 3 C 0.09 1.28 6.69 -39.16 -0.26 1.02 16 4 C -0.18 -1.98 9.03 -39.40 -0.36 -2.34 16 5 C -0.09 -1.07 10.02 -39.65 -0.40 -1.47 16 6 C -0.10 -1.44 9.53 -39.18 -0.37 -1.81 16 7 C -0.11 -1.86 5.88 -104.87 -0.62 -2.48 16 8 C 0.55 10.02 7.76 -12.47 -0.10 9.92 16 9 O -0.53 -10.79 14.03 -16.61 -0.23 -11.03 16 10 N -0.71 -12.27 5.34 -61.35 -0.33 -12.60 16 11 C 0.12 2.02 5.23 -4.04 -0.02 2.00 16 12 C 0.16 2.96 3.05 -67.93 -0.21 2.76 16 13 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 14 C -0.16 -2.80 9.49 37.15 0.35 -2.45 16 15 N -0.72 -16.78 4.56 -53.42 -0.24 -17.02 16 16 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 17 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 20 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.12 1.96 5.75 -38.58 -0.22 1.74 16 25 O -0.31 -5.29 8.62 -47.54 -0.41 -5.70 16 26 C 0.05 0.73 10.49 101.05 1.06 1.79 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.13 1.08 6.27 -52.49 -0.33 0.75 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.14 1.90 6.40 -52.49 -0.34 1.56 16 33 H 0.41 7.05 6.17 -40.82 -0.25 6.79 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.39 9.71 7.80 -40.82 -0.32 9.39 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.05 0.76 7.52 -51.93 -0.39 0.37 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -31.88 361.82 -7.00 -38.87 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.19 Total: 12.72 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.39 Total: 3.08 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.15 Total: -55.58 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.00 Total: -20.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.88 -7.00 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752913807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.284 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds