Wall clock time and date at job start Tue Mar 31 2020 09:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36002 * 117.00376 * 2 1 4 4 C 1.38470 * 120.00390 * 0.02562 * 3 2 1 5 5 C 1.38491 * 120.33520 * 180.02562 * 4 3 2 6 6 C 1.37786 * 120.34637 * 359.97438 * 5 4 3 7 7 C 1.39769 * 119.99996 * 359.97438 * 6 5 4 8 8 C 1.47550 * 120.16409 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99501 * 179.97438 * 8 7 6 10 10 N 1.34779 * 120.00202 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.08991 * 109.47625 * 64.99762 * 12 11 10 14 14 C 1.53006 * 109.46846 * 185.00008 * 12 11 10 15 15 N 1.46504 * 109.47054 * 304.99499 * 12 11 10 16 16 C 1.36929 * 119.99940 * 155.00291 * 15 12 11 17 17 H 1.08007 * 120.00260 * 359.97438 * 16 15 12 18 18 C 1.38808 * 120.00410 * 180.02562 * 16 15 12 19 19 N 1.31620 * 120.00574 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47288 * 90.00101 * 20 18 16 22 22 H 1.48504 * 109.47017 * 210.00442 * 20 18 16 23 23 H 1.48498 * 109.47019 * 329.99930 * 20 18 16 24 24 C 1.39139 * 120.00328 * 180.25140 * 3 2 1 25 25 O 1.35744 * 120.17327 * 0.02562 * 24 3 2 26 26 C 1.42901 * 116.99849 * 270.22712 * 25 24 3 27 27 H 1.09006 * 109.47087 * 300.00559 * 1 2 3 28 28 H 1.09000 * 109.46907 * 59.99842 * 1 2 3 29 29 H 1.08994 * 109.47610 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.83409 * 359.97438 * 4 3 2 31 31 H 1.08010 * 119.82752 * 179.97438 * 5 4 3 32 32 H 1.08003 * 120.00047 * 179.97438 * 6 5 4 33 33 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 35 35 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 36 36 H 1.09001 * 109.47241 * 59.99481 * 14 12 11 37 37 H 1.08996 * 109.46751 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.46824 * 299.99583 * 14 12 11 39 39 H 0.96996 * 120.00090 * 335.00419 * 15 12 11 40 40 H 0.97004 * 120.00299 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.47160 * 59.99983 * 26 25 24 42 42 H 1.09001 * 109.47015 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47533 * 300.00362 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2925 2.3731 0.0005 5 6 1.9142 3.6107 0.0000 6 6 3.2892 3.6990 -0.0005 7 6 4.0642 2.5358 0.0000 8 6 5.5369 2.6261 0.0000 9 8 6.2081 1.6123 0.0009 10 7 6.1381 3.8324 -0.0010 11 6 7.6004 3.9220 -0.0016 12 6 8.0211 5.3930 -0.0021 13 1 7.7038 5.8621 0.9291 14 6 9.5430 5.4881 -0.1284 15 7 7.3934 6.0801 -1.1336 16 6 7.1817 7.4319 -1.0817 17 1 7.4772 7.9917 -0.2066 18 6 6.5865 8.0829 -2.1535 19 7 6.3835 9.3824 -2.1039 20 14 6.0735 7.1146 -3.6663 21 1 4.6765 6.6394 -3.4997 22 1 6.1600 7.9868 -4.8652 23 1 6.9762 5.9479 -3.8369 24 6 3.4360 1.2846 -0.0053 25 8 4.1787 0.1484 -0.0110 26 6 4.5344 -0.4005 1.2596 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2141 2.3136 0.0005 31 1 1.3180 4.5114 0.0000 32 1 3.7682 4.6670 -0.0014 33 1 5.6026 4.6412 -0.0022 34 1 7.9942 3.4307 -0.8914 35 1 7.9947 3.4320 0.8886 36 1 9.8603 5.0190 -1.0598 37 1 9.8427 6.5360 -0.1293 38 1 10.0100 4.9769 0.7134 39 1 7.1276 5.5774 -1.9194 40 1 5.9672 9.8373 -2.8527 41 1 3.6296 -0.6449 1.8160 42 1 5.1252 -1.3046 1.1122 43 1 5.1194 0.3290 1.8196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752913808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:13 Heat of formation + Delta-G solvation = -85.392370 kcal Electronic energy + Delta-G solvation = -25789.513392 eV Core-core repulsion = 22028.546437 eV Total energy + Delta-G solvation = -3760.966955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86077 -40.47821 -39.03159 -38.01088 -37.83431 -35.23799 -33.80975 -32.00867 -31.25882 -30.93212 -28.30381 -27.89131 -27.23415 -25.40490 -24.27813 -23.27015 -21.81708 -21.44693 -20.04140 -19.45259 -18.37390 -17.89475 -17.54046 -17.13924 -16.95697 -16.69170 -16.23023 -16.05909 -15.73109 -15.69424 -15.57987 -15.12512 -14.65184 -14.43370 -14.29548 -13.79042 -13.60392 -13.53011 -13.33527 -13.26670 -13.00694 -12.85693 -12.68715 -12.49089 -12.15314 -12.11831 -12.06582 -11.79043 -11.70485 -11.19784 -11.01121 -10.79013 -10.20024 -9.89841 -9.34227 -9.27575 -7.99537 -5.33015 -0.39265 0.17076 1.39146 1.41748 1.47188 1.77428 1.95435 2.41227 2.48301 2.48901 2.89396 3.32283 3.53676 3.64436 3.82191 3.89694 3.98067 4.08973 4.30290 4.33085 4.37182 4.38890 4.40956 4.43363 4.47799 4.60305 4.71100 4.73536 4.75418 4.82634 5.01116 5.05162 5.07818 5.23425 5.27771 5.34971 5.46669 5.56701 5.81839 6.11952 6.23777 6.50321 6.58403 7.09116 7.15459 7.84157 8.02877 9.21607 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.004102 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.541845 B = 6824.431003 C = 8084.367699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.091 3.909 4 C -0.161 4.161 5 C -0.086 4.086 6 C -0.114 4.114 7 C -0.140 4.140 8 C 0.551 3.449 9 O -0.556 6.556 10 N -0.711 5.711 11 C 0.122 3.878 12 C 0.164 3.836 13 H 0.063 0.937 14 C -0.157 4.157 15 N -0.749 5.749 16 C -0.221 4.221 17 H 0.065 0.935 18 C -0.052 4.052 19 N -0.980 5.980 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.301 1.301 23 H -0.265 1.265 24 C 0.095 3.905 25 O -0.334 6.334 26 C 0.052 3.948 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.140 0.860 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.363 0.637 40 H 0.257 0.743 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 -18.322 7.943 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.045 3.955 4 C -0.180 4.180 5 C -0.103 4.103 6 C -0.133 4.133 7 C -0.144 4.144 8 C 0.338 3.662 9 O -0.436 6.436 10 N -0.363 5.363 11 C -0.002 4.002 12 C 0.056 3.944 13 H 0.081 0.919 14 C -0.217 4.217 15 N -0.394 5.394 16 C -0.352 4.352 17 H 0.083 0.917 18 C -0.244 4.244 19 N -0.630 5.630 20 Si 0.769 3.231 21 H -0.198 1.198 22 H -0.228 1.228 23 H -0.190 1.190 24 C 0.049 3.951 25 O -0.251 6.251 26 C -0.042 4.042 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.190 0.810 31 H 0.185 0.815 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.196 0.804 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.193 -19.128 7.898 24.019 hybrid contribution -0.451 0.583 -1.055 1.287 sum -12.644 -18.545 6.843 23.466 Atomic orbital electron populations 1.23456 0.75953 1.05878 1.02741 1.86152 1.23758 1.25608 1.88534 1.19367 0.90681 0.86418 0.98996 1.21719 1.01952 0.90661 1.03670 1.21319 0.93617 0.98784 0.96611 1.21466 0.95130 0.96983 0.99764 1.20189 0.93142 0.93817 1.07236 1.18265 0.87670 0.83508 0.76718 1.90754 1.66312 1.35710 1.50826 1.45942 1.08374 1.08135 1.73847 1.21665 0.79311 0.96797 1.02448 1.20660 0.92971 0.89707 0.91080 0.91853 1.22220 0.96241 1.01407 1.01794 1.42857 1.73748 1.04916 1.17838 1.18991 1.31067 0.83838 1.01334 0.91704 1.25282 1.02221 0.96078 1.00827 1.69851 1.51018 1.09114 1.33048 0.85647 0.79026 0.78193 0.80280 1.19837 1.22841 1.19042 1.18214 0.87420 0.85935 1.03519 1.85958 1.70491 1.37903 1.30703 1.22901 0.99431 0.98407 0.83445 0.90859 0.91346 0.86351 0.80995 0.81520 0.84226 0.75246 0.92275 0.89513 0.93217 0.93826 0.90494 0.80438 0.93434 0.92899 0.87919 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.33 -7.11 10.28 -79.67 -0.82 -7.93 16 3 C 0.09 2.21 6.69 22.54 0.15 2.36 16 4 C -0.16 -2.88 9.03 22.39 0.20 -2.68 16 5 C -0.09 -1.63 10.02 22.22 0.22 -1.40 16 6 C -0.11 -2.86 9.53 22.53 0.21 -2.65 16 7 C -0.14 -4.27 5.88 -20.02 -0.12 -4.39 16 8 C 0.55 18.86 7.76 86.70 0.67 19.53 16 9 O -0.56 -21.75 13.99 16.94 0.24 -21.51 16 10 N -0.71 -22.68 5.34 -466.25 -2.49 -25.17 16 11 C 0.12 3.79 5.23 86.38 0.45 4.24 16 12 C 0.16 5.63 3.05 44.99 0.14 5.77 16 13 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 14 C -0.16 -4.92 9.49 71.98 0.68 -4.24 16 15 N -0.75 -32.23 4.36 -322.94 -1.41 -33.63 16 16 C -0.22 -11.68 10.41 84.03 0.87 -10.80 16 17 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 18 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 19 N -0.98 -60.16 13.97 21.65 0.30 -59.86 16 20 Si 0.94 44.26 27.74 68.60 1.90 46.16 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 23 H -0.27 -11.80 6.52 99.48 0.65 -11.15 16 24 C 0.10 2.89 5.75 22.92 0.13 3.02 16 25 O -0.33 -11.09 8.63 -63.34 -0.55 -11.64 16 26 C 0.05 1.36 10.48 113.37 1.19 2.54 16 27 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16 28 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 29 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.17 1.73 6.27 -2.91 -0.02 1.71 16 31 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.14 3.38 6.40 -2.91 -0.02 3.36 16 33 H 0.41 12.83 6.16 -92.71 -0.57 12.26 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.36 15.69 5.66 -92.71 -0.52 15.16 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.03 0.97 7.49 -2.39 -0.02 0.95 16 Total: -1.00 -73.16 358.63 3.45 -69.71 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.12 Total: 33.75 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.39 Total: 10.13 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.60 Total: -118.66 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.13 Total: -41.08 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -73.16 3.45 -69.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752913808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.687 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds