Wall clock time and date at job start Tue Mar 31 2020 09:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35972 * 117.00352 * 2 1 4 4 C 1.38698 * 120.00053 * 180.02562 * 3 2 1 5 5 C 1.38133 * 119.99925 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00046 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00064 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99959 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 H 1.09010 * 109.46666 * 65.00169 * 13 12 11 15 15 C 1.52999 * 109.47208 * 184.99986 * 13 12 11 16 16 N 1.46499 * 109.47222 * 305.00540 * 13 12 11 17 17 C 1.36941 * 120.00007 * 154.99603 * 16 13 12 18 18 H 1.08000 * 119.99814 * 0.02562 * 17 16 13 19 19 C 1.38812 * 119.99820 * 179.97438 * 17 16 13 20 20 N 1.31622 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47087 * 90.00461 * 21 19 17 23 23 H 1.48497 * 109.47504 * 210.00668 * 21 19 17 24 24 H 1.48507 * 109.47255 * 330.00947 * 21 19 17 25 25 C 1.38699 * 120.00363 * 0.24959 * 6 5 4 26 26 C 1.38142 * 119.99254 * 359.49661 * 25 6 5 27 27 H 1.08997 * 109.46754 * 60.00269 * 1 2 3 28 28 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46474 * 300.00207 * 1 2 3 30 30 H 1.07993 * 119.99998 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.00006 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47187 * 300.00196 * 8 7 6 33 33 H 1.09001 * 109.46558 * 60.00244 * 8 7 6 34 34 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 36 36 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 37 37 H 1.09002 * 109.46911 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47001 * 299.99836 * 15 13 12 39 39 H 1.08997 * 109.46828 * 60.00404 * 15 13 12 40 40 H 0.97001 * 119.99715 * 334.99042 * 16 13 12 41 41 H 0.96999 * 119.99415 * 179.97438 * 20 19 17 42 42 H 1.07991 * 120.00693 * 179.72595 * 25 6 5 43 43 H 1.08002 * 119.99354 * 180.22680 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0587 2.5147 0.0000 6 6 3.3033 3.6780 0.0005 7 8 3.9207 4.8896 0.0016 8 6 3.0808 6.0458 0.0015 9 6 3.9351 7.2872 0.0021 10 8 5.1441 7.1914 0.0021 11 7 3.3555 8.5040 0.0027 12 6 4.1859 9.7110 0.0027 13 6 3.2867 10.9488 0.0028 14 1 2.7218 10.9874 0.9343 15 6 4.1496 12.2060 -0.1229 16 7 2.3587 10.8783 -1.1285 17 6 1.1634 11.5446 -1.0762 18 1 0.9052 12.1224 -0.2011 19 6 0.2843 11.4782 -2.1484 20 7 0.5993 10.7743 -3.2151 21 14 -1.3464 12.3865 -2.0768 22 1 -1.1742 13.7565 -2.6234 23 1 -2.3563 11.6551 -2.8833 24 1 -1.8050 12.4701 -0.6668 25 6 1.9182 3.6056 0.0058 26 6 1.2911 2.3747 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 4.0196 0.3783 -0.0005 31 1 5.1372 2.5712 0.0000 32 1 2.4522 6.0381 -0.8889 33 1 2.4509 6.0372 0.8911 34 1 2.3886 8.5807 0.0023 35 1 4.8156 9.7187 0.8925 36 1 4.8149 9.7192 -0.8875 37 1 3.5090 13.0879 -0.1224 38 1 4.8400 12.2584 0.7189 39 1 4.7144 12.1673 -1.0543 40 1 2.5909 10.3596 -1.9147 41 1 -0.0152 10.7277 -3.9642 42 1 1.3301 4.5112 0.0107 43 1 0.2125 2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752918314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:53 Heat of formation + Delta-G solvation = -72.488784 kcal Electronic energy + Delta-G solvation = -24371.188261 eV Core-core repulsion = 20610.780848 eV Total energy + Delta-G solvation = -3760.407413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65014 -39.67314 -38.69428 -36.58801 -36.13887 -33.62571 -31.98738 -31.41379 -30.08001 -28.93486 -28.25646 -27.27998 -25.42486 -23.71378 -22.88871 -22.04430 -20.33424 -20.05385 -18.69264 -17.86733 -17.60981 -17.02594 -16.37747 -16.16943 -15.92754 -15.62876 -15.10090 -14.96403 -14.50291 -14.30890 -13.86707 -13.78905 -13.52600 -13.28287 -12.99500 -12.82646 -12.59459 -12.30412 -12.15729 -12.05958 -11.95586 -11.62812 -11.43007 -10.95972 -10.93385 -10.80951 -10.60981 -10.42133 -10.08066 -9.78551 -9.63434 -9.28611 -9.05332 -8.74080 -7.91618 -7.11537 -5.88260 -3.18897 1.04921 1.28009 2.64908 2.77949 3.06403 3.35186 3.41057 3.42508 3.54076 3.83159 4.48158 4.50406 4.57813 4.78257 4.84058 4.86409 4.95575 5.00854 5.07902 5.16300 5.25912 5.28052 5.38913 5.41782 5.51827 5.65556 5.82855 5.87839 6.02937 6.07201 6.12613 6.13056 6.25519 6.35872 6.50631 6.67673 6.74701 6.97330 7.06190 7.29372 7.59568 7.79695 8.29106 8.43046 9.41129 9.95534 10.31247 11.33527 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002753 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.495810 B =10168.364946 C =11904.861263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.085 3.915 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.099 3.901 7 O -0.289 6.289 8 C 0.041 3.959 9 C 0.514 3.486 10 O -0.532 6.532 11 N -0.708 5.708 12 C 0.117 3.883 13 C 0.159 3.841 14 H 0.054 0.946 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.170 4.170 26 C -0.166 4.166 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.134 0.866 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -17.521 8.233 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.041 3.959 4 C -0.130 4.130 5 C -0.128 4.128 6 C 0.053 3.947 7 O -0.201 6.201 8 C -0.038 4.038 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.361 5.361 12 C -0.007 4.007 13 C 0.049 3.951 14 H 0.072 0.928 15 C -0.223 4.223 16 N -0.367 5.367 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.189 4.189 26 C -0.185 4.185 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.152 0.848 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.138 -17.633 8.276 19.596 hybrid contribution -1.948 0.752 -0.427 2.132 sum 0.190 -16.881 7.848 18.617 Atomic orbital electron populations 1.23034 0.78560 1.03812 1.01362 1.86059 1.21195 1.26753 1.89390 1.18904 0.92323 0.84199 1.00519 1.20214 0.91298 0.97785 1.03682 1.20261 1.00501 0.88826 1.03248 1.18972 0.91012 0.85527 0.99142 1.86165 1.34068 1.11093 1.88808 1.22501 0.93256 0.84085 1.03964 1.19899 0.88586 0.84334 0.77415 1.90715 1.14234 1.86856 1.49060 1.45811 1.11672 1.04644 1.74003 1.21730 0.93550 0.83730 1.01700 1.20520 0.90537 0.90993 0.93046 0.92771 1.22360 0.99637 1.00139 1.00199 1.42489 1.17556 1.60036 1.16612 1.19221 0.93573 1.23727 1.00944 0.91086 1.24752 0.98917 1.00559 0.96453 1.69666 1.37066 1.44523 1.06511 0.86213 0.83599 0.79254 0.77205 1.21714 1.21807 1.20751 1.21136 0.93355 0.98715 1.05707 1.21039 1.00080 0.91632 1.05739 0.92660 0.88355 0.92740 0.84485 0.84202 0.88688 0.89149 0.75204 0.91605 0.91617 0.92274 0.94129 0.93147 0.78073 0.93418 0.84816 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.21 10.50 -19.65 -0.21 -3.42 16 3 C 0.09 0.92 6.69 -39.24 -0.26 0.66 16 4 C -0.11 -1.17 9.98 -39.45 -0.39 -1.56 16 5 C -0.11 -1.26 9.98 -39.45 -0.39 -1.65 16 6 C 0.10 1.26 6.69 -39.24 -0.26 1.00 16 7 O -0.29 -4.27 9.67 -39.61 -0.38 -4.65 16 8 C 0.04 0.53 5.22 36.01 0.19 0.72 16 9 C 0.51 8.37 7.91 -10.99 -0.09 8.29 16 10 O -0.53 -10.66 16.50 -14.35 -0.24 -10.89 16 11 N -0.71 -11.18 5.39 -60.29 -0.32 -11.51 16 12 C 0.12 1.92 5.23 -4.04 -0.02 1.90 16 13 C 0.16 2.86 3.05 -67.93 -0.21 2.66 16 14 H 0.05 0.96 8.08 -51.92 -0.42 0.55 16 15 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 16 N -0.72 -16.38 4.56 -53.42 -0.24 -16.62 16 17 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 21 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.17 -1.90 9.03 -39.45 -0.36 -2.26 16 26 C -0.17 -1.71 9.03 -39.45 -0.36 -2.06 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.10 1.11 7.67 -51.93 -0.40 0.71 16 33 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 34 H 0.41 6.35 8.14 -40.82 -0.33 6.02 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.13 1.28 6.29 -52.49 -0.33 0.95 16 43 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -31.97 366.43 -7.47 -39.45 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.25 Total: 11.95 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.05 Total: -0.24 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.16 Total: -53.88 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.83 Total: -18.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.97 -7.47 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752918314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.042 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds