Wall clock time and date at job start Tue Mar 31 2020 09:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35972 * 117.00352 * 2 1 4 4 C 1.38698 * 120.00053 * 180.02562 * 3 2 1 5 5 C 1.38133 * 119.99925 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00046 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00064 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99959 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47481 * 295.00383 * 13 12 11 15 15 C 1.53002 * 109.47314 * 174.99696 * 13 12 11 16 16 N 1.46506 * 109.46784 * 55.00039 * 13 12 11 17 17 C 1.36937 * 120.00241 * 205.00010 * 16 13 12 18 18 H 1.08005 * 119.99485 * 359.97438 * 17 16 13 19 19 C 1.38806 * 120.00207 * 180.02562 * 17 16 13 20 20 N 1.31620 * 119.99796 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00036 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47240 * 90.00033 * 21 19 17 23 23 H 1.48503 * 109.46941 * 209.99644 * 21 19 17 24 24 H 1.48499 * 109.47054 * 329.99902 * 21 19 17 25 25 C 1.38699 * 120.00363 * 0.24959 * 6 5 4 26 26 C 1.38142 * 119.99254 * 359.49661 * 25 6 5 27 27 H 1.09001 * 109.46474 * 300.00207 * 1 2 3 28 28 H 1.08997 * 109.46754 * 60.00269 * 1 2 3 29 29 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.99998 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.00006 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47187 * 300.00196 * 8 7 6 33 33 H 1.09001 * 109.46558 * 60.00244 * 8 7 6 34 34 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 36 36 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 37 37 H 1.08994 * 109.46960 * 300.00539 * 15 13 12 38 38 H 1.09000 * 109.46682 * 60.00555 * 15 13 12 39 39 H 1.09002 * 109.47069 * 180.02562 * 15 13 12 40 40 H 0.97005 * 119.99835 * 24.99744 * 16 13 12 41 41 H 0.97010 * 119.99809 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.00693 * 179.72595 * 25 6 5 43 43 H 1.08002 * 119.99354 * 180.22680 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0587 2.5147 0.0000 6 6 3.3033 3.6780 0.0005 7 8 3.9207 4.8896 0.0016 8 6 3.0808 6.0458 0.0015 9 6 3.9351 7.2872 0.0021 10 8 5.1441 7.1914 0.0021 11 7 3.3555 8.5040 0.0027 12 6 4.1859 9.7110 0.0027 13 6 3.2867 10.9488 0.0028 14 1 2.7217 10.9875 -0.9285 15 6 4.1496 12.2060 0.1286 16 7 2.3588 10.8782 1.1343 17 6 1.1636 11.5445 1.0823 18 1 0.9052 12.1224 0.2072 19 6 0.2846 11.4780 2.1546 20 7 0.5998 10.7740 3.2211 21 14 -1.3454 12.3875 2.0839 22 1 -2.3826 11.5000 1.4991 23 1 -1.7505 12.7848 3.4562 24 1 -1.1991 13.6007 1.2401 25 6 1.9182 3.6056 0.0058 26 6 1.2911 2.3747 -0.0001 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0196 0.3783 -0.0005 31 1 5.1372 2.5712 0.0000 32 1 2.4522 6.0381 -0.8889 33 1 2.4509 6.0372 0.8911 34 1 2.3886 8.5807 0.0023 35 1 4.8156 9.7187 0.8925 36 1 4.8149 9.7192 -0.8875 37 1 4.7145 12.1672 1.0599 38 1 4.8400 12.2585 -0.7133 39 1 3.5089 13.0878 0.1291 40 1 2.5910 10.3593 1.9203 41 1 -0.0146 10.7273 3.9704 42 1 1.3301 4.5112 0.0107 43 1 0.2125 2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752918315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:57 Heat of formation + Delta-G solvation = -72.476845 kcal Electronic energy + Delta-G solvation = -24371.152215 eV Core-core repulsion = 20610.745320 eV Total energy + Delta-G solvation = -3760.406895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65003 -39.67317 -38.69426 -36.58783 -36.13869 -33.62600 -31.98736 -31.41362 -30.07993 -28.93457 -28.25619 -27.27979 -25.42459 -23.71338 -22.88860 -22.04414 -20.33463 -20.05420 -18.69244 -17.86721 -17.60925 -17.02626 -16.37675 -16.16969 -15.92748 -15.62951 -15.09948 -14.96476 -14.50304 -14.30912 -13.86632 -13.78863 -13.52579 -13.28243 -12.99481 -12.82627 -12.59463 -12.30374 -12.15786 -12.05874 -11.95566 -11.62808 -11.43151 -10.96039 -10.92808 -10.81849 -10.60976 -10.41086 -10.08546 -9.78484 -9.63407 -9.28598 -9.05507 -8.74100 -7.91609 -7.11520 -5.88234 -3.18864 1.04936 1.28012 2.64890 2.77949 3.06412 3.34628 3.41333 3.42722 3.54078 3.83139 4.48150 4.50425 4.57855 4.78262 4.84114 4.86411 4.95635 5.00788 5.07869 5.16329 5.25932 5.28058 5.38922 5.41981 5.51667 5.65578 5.82867 5.87796 6.02963 6.07227 6.12634 6.13079 6.25552 6.35883 6.50666 6.67737 6.74703 6.97446 7.06202 7.29379 7.59556 7.79655 8.29091 8.43020 9.41140 9.95538 10.31265 11.33539 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.002753 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.005097 B =10170.091507 C =11906.403825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.085 3.915 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.099 3.901 7 O -0.289 6.289 8 C 0.041 3.959 9 C 0.514 3.486 10 O -0.532 6.532 11 N -0.708 5.708 12 C 0.117 3.883 13 C 0.159 3.841 14 H 0.054 0.946 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.170 4.170 26 C -0.166 4.166 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.134 0.866 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -17.489 -8.224 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.041 3.959 4 C -0.130 4.130 5 C -0.128 4.128 6 C 0.053 3.947 7 O -0.201 6.201 8 C -0.038 4.038 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.361 5.361 12 C -0.007 4.007 13 C 0.049 3.951 14 H 0.072 0.928 15 C -0.223 4.223 16 N -0.367 5.367 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.189 4.189 26 C -0.185 4.185 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.152 0.848 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.165 -17.586 -8.256 19.548 hybrid contribution -1.959 0.733 0.416 2.133 sum 0.205 -16.853 -7.840 18.589 Atomic orbital electron populations 1.23034 0.78560 1.03812 1.01362 1.86059 1.21196 1.26752 1.89389 1.18904 0.92323 0.84199 1.00515 1.20214 0.91298 0.97785 1.03685 1.20261 1.00500 0.88826 1.03246 1.18972 0.91012 0.85527 0.99147 1.86165 1.34068 1.11093 1.88810 1.22501 0.93257 0.84086 1.03963 1.19899 0.88586 0.84333 0.77415 1.90715 1.14233 1.86856 1.49060 1.45810 1.11670 1.04645 1.74005 1.21731 0.93551 0.83729 1.01700 1.20521 0.90540 0.90994 0.93038 0.92772 1.22360 0.99635 1.00141 1.00196 1.42490 1.17542 1.60051 1.16612 1.19220 0.93568 1.23751 1.00923 0.91089 1.24750 0.98908 1.00589 0.96433 1.69666 1.36973 1.44623 1.06502 0.86211 0.83936 0.79356 0.76759 1.21721 1.21794 1.20772 1.21137 0.93356 0.98718 1.05698 1.21040 1.00080 0.91632 1.05743 0.92668 0.92732 0.88355 0.84485 0.84202 0.89152 0.88687 0.75207 0.91605 0.91615 0.93151 0.94127 0.92267 0.78071 0.93419 0.84814 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.21 10.50 -19.65 -0.21 -3.42 16 3 C 0.09 0.92 6.69 -39.24 -0.26 0.66 16 4 C -0.11 -1.17 9.98 -39.45 -0.39 -1.56 16 5 C -0.11 -1.26 9.98 -39.45 -0.39 -1.65 16 6 C 0.10 1.26 6.69 -39.24 -0.26 1.00 16 7 O -0.29 -4.27 9.67 -39.61 -0.38 -4.65 16 8 C 0.04 0.53 5.22 36.01 0.19 0.72 16 9 C 0.51 8.38 7.91 -10.99 -0.09 8.29 16 10 O -0.53 -10.66 16.50 -14.35 -0.24 -10.89 16 11 N -0.71 -11.19 5.39 -60.29 -0.32 -11.51 16 12 C 0.12 1.92 5.23 -4.04 -0.02 1.90 16 13 C 0.16 2.86 3.05 -67.93 -0.21 2.66 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 16 N -0.72 -16.38 4.56 -53.42 -0.24 -16.62 16 17 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 18 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 21 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.17 -1.90 9.03 -39.45 -0.36 -2.26 16 26 C -0.17 -1.71 9.03 -39.45 -0.36 -2.07 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 33 H 0.10 1.11 7.65 -51.93 -0.40 0.72 16 34 H 0.41 6.35 8.14 -40.82 -0.33 6.02 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.13 1.28 6.29 -52.49 -0.33 0.95 16 43 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -31.96 366.44 -7.47 -39.44 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.25 Total: 11.96 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.05 Total: -0.25 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.16 Total: -53.88 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.83 Total: -18.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.96 -7.47 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752918315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.037 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds